RLG00000011318

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000298
Physical Location & Seq
Reverse (-)
8537921 .. 8538806
886 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011318

Sequence Viewer

Length: 438 bp
ATGGCGAGGCTCTCCGTTAAGAATATGTTCAAGTGCAGAGTTTTGTATGTGTGCAATCCAATTTTAGGTGAGCACATAACCATTCCACCACCTCCTAAAGGTTGGGCAATGCCACGGTATGATTTTTTTGGACTTGGTTTGAGTATTGGGACTAATGAATACAAGGTGTTGCGAACCACTTTTCCATACGTGGACTCACTACTCTACATTGACTACTTTGACAACCTTGAGGCTGACGTATACACCATTGGTACCGGTGTTTGGAGAAGAATTGGAAAGCCGCCCCGCAACTATAACCAGCTGTTACCACCTTTCAATGCTTCTCTACATGGATGTCTCCATTGGCTTTCCTCCATGCTCCATGGTGGTGGTGGTGATCACACAGTTGATATATGGGTTATGAAGGATTATGGTATCCAAGAGTCCTGGAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

146

Amino Acids

16.65

Weight (kDa)

8.44

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 14 - 117 2.9e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 251
AccB1I GGYRCC 1 cut(s) 251
AccI GTMKAC 1 cut(s) 240
AciI CCGC 2 cut(s) 281, 286
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 3 cut(s) 65, 98, 261
AgeI ACCGGT 1 cut(s) 254
AgsI TTSAA 2 cut(s) 31, 316
AjnI CCWGG 1 cut(s) 425
AloI GAACNNNNNNTCC 2 cut(s) 166, 198
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 341
AsiGI ACCGGT 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 26
Asp718I GGTACC 1 cut(s) 251
AsuHPI GGTGA 2 cut(s) 80, 386
BaeI ACNNNNGTAYC 2 cut(s) 243, 276
BanI GGYRCC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 427
BciVI GTATCC 1 cut(s) 425
BclI TGATCA 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 341
BfuI GTATCC 1 cut(s) 425
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
Bme1390I CCNGG 1 cut(s) 427
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 427
BpuEI CTTGAG 1 cut(s) 248
BsaAI YACGTR 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 113, 361
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 98, 261
Bse118I RCCGGY 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 114
BseBI CCWGG 1 cut(s) 427
BseDI CCNNGG 2 cut(s) 113, 361
BseGI GGATG 1 cut(s) 338
BseLI CCNNNNNNNGG 3 cut(s) 65, 98, 261
BseMI GCAATG 1 cut(s) 114
BsgI GTGCAG 1 cut(s) 55
BshNI GGYRCC 1 cut(s) 251
BshTI ACCGGT 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 75
BsiSI CCGG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 3 cut(s) 65, 98, 261
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 376
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 2 cut(s) 281, 286
BspLI GGNNCC 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 254
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 2 cut(s) 113, 361
BssMI GATC 1 cut(s) 376
BssNAI GTATAC 1 cut(s) 241
BssT1I CCWWGG 1 cut(s) 361
Bst1107I GTATAC 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 427
Bst4CI ACNGT 2 cut(s) 117, 385
BstBAI YACGTR 1 cut(s) 190
BstDSI CCRYGG 2 cut(s) 113, 361
BstENI CCTNNNNNAGG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 338
BstKTI GATC 1 cut(s) 379
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 1 cut(s) 376
BstNI CCWGG 1 cut(s) 427
BstSCI CCNGG 1 cut(s) 425
BstXI CCANNNNNNTGG 1 cut(s) 368
BstZ17I GTATAC 1 cut(s) 241
BsuI GTATCC 1 cut(s) 425
BtgI CCRYGG 2 cut(s) 113, 361
BtsCI GGATG 1 cut(s) 338
Cfr10I RCCGGY 1 cut(s) 254
Csp6I GTAC 1 cut(s) 252
CspAI ACCGGT 1 cut(s) 254
CviAII CATG 3 cut(s) 329, 355, 362
CviJI RGCY 5 cut(s) 10, 233, 280, 301, 346
CviKI_1 RGCY 5 cut(s) 10, 233, 280, 301, 346
CviQI GTAC 1 cut(s) 252
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 361
EcoNI CCTNNNNNAGG 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 425
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 3 cut(s) 332, 358, 365
FaqI GGGAC 1 cut(s) 163
FatI CATG 3 cut(s) 328, 354, 361
FauI CCCGC 1 cut(s) 293
FbaI TGATCA 1 cut(s) 376
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 281
FokI GGATG 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 281
GluI GCNGC 1 cut(s) 281
HapII CCGG 1 cut(s) 255
Hin1II CATG 3 cut(s) 332, 358, 365
HinfI GANTC 2 cut(s) 194, 422
HpaII CCGG 1 cut(s) 255
HphI GGTGA 2 cut(s) 80, 386
Hpy166II GTNNAC 2 cut(s) 193, 241
Hpy8I GTNNAC 2 cut(s) 193, 241
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 2 cut(s) 117, 385
HpyCH4IV ACGT 2 cut(s) 189, 237
HpyCH4V TGCA 2 cut(s) 36, 54
HpySE526I ACGT 2 cut(s) 189, 237
Hsp92II CATG 3 cut(s) 332, 358, 365
KpnI GGTACC 1 cut(s) 255
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 1 cut(s) 376
LmnI GCTCC 1 cut(s) 363
LpnPI CCDG 3 cut(s) 268, 311, 412
MaeII ACGT 2 cut(s) 189, 237
MaeIII GTNAC 1 cut(s) 303
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 1 cut(s) 279
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 3 cut(s) 60, 270, 433
MlyI GAGTC 2 cut(s) 188, 431
MnlI CCTC 3 cut(s) 102, 223, 361
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 366
MspA1I CMGCKG 1 cut(s) 301
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 427
MvaI CCWGG 1 cut(s) 427
NcoI CCATGG 1 cut(s) 361
NdeII GATC 1 cut(s) 376
NlaIII CATG 3 cut(s) 332, 358, 365
NlaIV GGNNCC 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 26
PfoI TCCNGGA 1 cut(s) 425
PinAI ACCGGT 1 cut(s) 254
PkrI GCNGC 1 cut(s) 282
PleI GAGTC 2 cut(s) 188, 430
PpsI GAGTC 2 cut(s) 188, 430
Ppu21I YACGTR 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 425
PspGI CCWGG 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 301
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
RseI CAYNNNNRTG 1 cut(s) 366
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 1 cut(s) 376
SchI GAGTC 2 cut(s) 188, 431
ScrFI CCNGG 1 cut(s) 427
SduI GDGCHC 1 cut(s) 75
SetI ASST 9 cut(s) 70, 94, 103, 168, 192, 228, 240, 303, 313
SmiMI CAYNNNNRTG 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 3 cut(s) 60, 270, 433
SsiI CCGC 2 cut(s) 281, 286
StyD4I CCNGG 1 cut(s) 425
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 2 cut(s) 117, 385
TaiI ACGT 2 cut(s) 192, 240
TasI AATT 3 cut(s) 60, 270, 433
TauI GCSGC 1 cut(s) 283
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TspDTI ATGAA 2 cut(s) 171, 416
TspGWI ACGGA 1 cut(s) 4
XagI CCTNNNNNAGG 1 cut(s) 96
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.