RchiOBHm_Chr4g0395611

peptide-methionine (R)-S-oxide reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000298
Physical Location & Seq
Forward (+)
11392312 .. 11394169
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36805

Sequence Viewer

Length: 744 bp
ATGCATTCATTCAACTTCGAAACAGAAAAGTTTGAAACAATACCCCCACCTAGCCACTTTGCCCCAAAAGATAAACTTAAAGAGTGGTTGACCTTGGGGGTGTTGGAAGGTTGTCTCCTGTTATGTGTGTTTGATGATGATTTTAGCAAATTTGAAATGTGGATTATGAGAGATTATGGTGTCCAAGACTCTTGGACGAAGATTTTTGTTATTGAAAACTTGTACCCAAGAAGATATCAACCTGAAGAGTATGGACCAATTATGTTTTTGAGTAATGGTGAAATTCTAATGTCCTATGGTGTTGGTGCTGTGGTTTGTTATAACCCAGAAACAAAGAGTTTCAGGAAAACTAGTATTTCTCCGACTGAGTCAGAATTTGTTGCAGTTGCCTACAGTCCATCATTTGTTTCACTTTACGATATTGCAAAAGGAGAGGAGGTGGAAAGGATAAGAAACAATGAGAATTTCAACAAGCTGTTTAATGAAGGGAGACGTAGTGCTGCTGGTTCTGGAATGTCAGCCCACCAGTGCACAAATCTAAACCCAGGCTCTTGCCCACCTGGTGTTGAAGAGGCTCTCCCTAAACCTATTATTACAACTTCCTCTGCAACTAGCAATGAGCAAGTGGATTTTGCTCTGAGGATTGGGAGTAAGTGCGCTATATGTAGTGGGCAATTGGGTTATGTTTTCAGAGGTAAAGGGTTCGCAATGTGTCAAAAATGTTTTGATGCTAGTTCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

247

Amino Acids

27.63

Weight (kDa)

5.24

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 2 - 137 2e-06 F-box associated beta propeller domain
FBA_3 PF08268 3 - 125 1.7e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
AcsI RAATTY 4 cut(s) 149, 282, 374, 463
AcuI CTGAAG 1 cut(s) 264
AdeI CACNNNGTG 1 cut(s) 563
AfaI GTAC 1 cut(s) 224
AgsI TTSAA 6 cut(s) 13, 35, 155, 215, 469, 569
AhlI ACTAGT 1 cut(s) 350
AjnI CCWGG 2 cut(s) 544, 559
AluBI AGCT 1 cut(s) 475
AluI AGCT 1 cut(s) 475
Alw21I GWGCWC 1 cut(s) 533
Alw26I GTCTC 2 cut(s) 119, 484
Alw44I GTGCAC 1 cut(s) 529
ApaLI GTGCAC 1 cut(s) 529
ApeKI GCWGC 1 cut(s) 500
ApoI RAATTY 4 cut(s) 149, 282, 374, 463
AspLEI GCGC 1 cut(s) 659
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 290
AsuII TTCGAA 1 cut(s) 18
AvaII GGWCC 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 533
Bbv12I GWGCWC 1 cut(s) 533
BbvI GCAGC 1 cut(s) 487
BccI CCATC 1 cut(s) 406
BciT130I CCWGG 2 cut(s) 546, 561
BcoDI GTCTC 2 cut(s) 119, 484
BcuI ACTAGT 1 cut(s) 350
BfaI CTAG 4 cut(s) 51, 351, 612, 732
BfmI CTRYAG 1 cut(s) 391
BisI GCNGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 502
Bme1390I CCNGG 2 cut(s) 546, 561
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 254
BmrFI CCNGG 2 cut(s) 546, 561
BmsI GCATC 1 cut(s) 718
Bpu14I TTCGAA 1 cut(s) 18
BsaJI CCNNGG 2 cut(s) 93, 544
BsaXI ACNNNNNCTCC 4 cut(s) 423, 453, 481, 511
Bse1I ACTGG 1 cut(s) 526
Bse3DI GCAATG 2 cut(s) 622, 714
BseBI CCWGG 2 cut(s) 546, 561
BseDI CCNNGG 2 cut(s) 93, 544
BseMI GCAATG 2 cut(s) 622, 714
BseMII CTCAG 2 cut(s) 357, 629
BseNI ACTGG 1 cut(s) 526
BseRI GAGGAG 1 cut(s) 449
BseSI GKGCMC 1 cut(s) 533
BseXI GCAGC 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 533
BsmAI GTCTC 2 cut(s) 119, 484
BsmBI CGTCTC 1 cut(s) 484
BsmI GAATGC 1 cut(s) 4
Bsp119I TTCGAA 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 533
BspCNI CTCAG 2 cut(s) 358, 630
BspT104I TTCGAA 1 cut(s) 18
BsrDI GCAATG 2 cut(s) 622, 714
BsrI ACTGG 1 cut(s) 526
BssECI CCNNGG 2 cut(s) 93, 544
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 2 cut(s) 546, 561
Bst4CI ACNGT 1 cut(s) 395
Bst6I CTCTTC 2 cut(s) 240, 564
BstBI TTCGAA 1 cut(s) 18
BstDEI CTNAG 2 cut(s) 366, 638
BstHHI GCGC 1 cut(s) 659
BstMAI GTCTC 2 cut(s) 119, 484
BstNI CCWGG 2 cut(s) 546, 561
BstSCI CCNGG 2 cut(s) 544, 559
BstSFI CTRYAG 1 cut(s) 391
BstSLI GKGCMC 1 cut(s) 533
BstV1I GCAGC 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 533
CfoI GCGC 1 cut(s) 659
Cfr13I GGNCC 1 cut(s) 254
CsiI ACCWGGT 1 cut(s) 559
Csp6I GTAC 1 cut(s) 223
CviJI RGCY 5 cut(s) 54, 475, 521, 549, 575
CviKI_1 RGCY 5 cut(s) 54, 475, 521, 549, 575
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 2 cut(s) 366, 638
DraIII CACNNNGTG 1 cut(s) 563
Eam1104I CTCTTC 2 cut(s) 240, 564
EarI CTCTTC 2 cut(s) 240, 564
Eco130I CCWWGG 1 cut(s) 93
Eco32I GATATC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 264
EcoRII CCWGG 2 cut(s) 544, 559
EcoRV GATATC 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 93
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 484
FalI AAGNNNNNCTT 2 cut(s) 60, 92
Fnu4HI GCNGC 1 cut(s) 501
Fsp4HI GCNGC 1 cut(s) 501
FspBI CTAG 4 cut(s) 51, 351, 612, 732
GlaI GCGC 1 cut(s) 658
GluI GCNGC 1 cut(s) 501
HhaI GCGC 1 cut(s) 659
Hin6I GCGC 1 cut(s) 657
HinP1I GCGC 1 cut(s) 657
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 2 cut(s) 188, 368
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 90, 531
Hpy188I TCNGA 4 cut(s) 363, 373, 639, 692
Hpy188III TCNNGA 3 cut(s) 343, 510, 741
Hpy8I GTNNAC 2 cut(s) 90, 531
HpyAV CCTTC 2 cut(s) 101, 479
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 5 cut(s) 4, 383, 425, 531, 608
HpyF3I CTNAG 2 cut(s) 366, 638
HpySE526I ACGT 1 cut(s) 493
HspAI GCGC 1 cut(s) 657
Lsp1109I GCAGC 1 cut(s) 487
LweI GCATC 1 cut(s) 718
MabI ACCWGGT 1 cut(s) 559
MaeI CTAG 4 cut(s) 51, 351, 612, 732
MaeII ACGT 1 cut(s) 493
MboII GAAGA 4 cut(s) 211, 243, 257, 581
MfeI CAATTG 1 cut(s) 674
MhlI GDGCHC 1 cut(s) 533
MluCI AATT 6 cut(s) 149, 258, 282, 374, 463, 674
MlyI GAGTC 2 cut(s) 182, 377
MmeI TCCRAC 2 cut(s) 84, 386
MnlI CCTC 6 cut(s) 427, 430, 565, 613, 633, 686
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 78, 480
MspR9I CCNGG 2 cut(s) 546, 561
MunI CAATTG 1 cut(s) 674
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 2 cut(s) 546, 561
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 18
PctI GAATGC 1 cut(s) 4
PflFI GACNNNGTC 1 cut(s) 367
PkrI GCNGC 1 cut(s) 502
PleI GAGTC 2 cut(s) 182, 376
PpsI GAGTC 2 cut(s) 182, 376
PsiI TTATAA 1 cut(s) 321
Psp6I CCWGG 2 cut(s) 544, 559
PspGI CCWGG 2 cut(s) 544, 559
PspPI GGNCC 1 cut(s) 254
PsyI GACNNNGTC 1 cut(s) 367
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SaqAI TTAA 2 cut(s) 78, 480
SatI GCNGC 1 cut(s) 501
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 2 cut(s) 182, 377
ScrFI CCNGG 2 cut(s) 546, 561
SduI GDGCHC 1 cut(s) 533
SexAI ACCWGGT 1 cut(s) 559
SfaNI GCATC 1 cut(s) 718
SfcI CTRYAG 1 cut(s) 391
SfuI TTCGAA 1 cut(s) 18
SinI GGWCC 1 cut(s) 254
SpeI ACTAGT 1 cut(s) 350
Sse9I AATT 6 cut(s) 149, 258, 282, 374, 463, 674
SspMI CTAG 4 cut(s) 51, 351, 612, 732
StyD4I CCNGG 2 cut(s) 544, 559
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 395
TaiI ACGT 1 cut(s) 496
TaqI TCGA 1 cut(s) 18
TasI AATT 6 cut(s) 149, 258, 282, 374, 463, 674
Tru1I TTAA 2 cut(s) 78, 480
Tru9I TTAA 2 cut(s) 78, 480
TscAI CASTG 1 cut(s) 533
TseI GCWGC 1 cut(s) 500
TspDTI ATGAA 1 cut(s) 498
TspRI CASTG 1 cut(s) 533
Tth111I GACNNNGTC 1 cut(s) 367
VneI GTGCAC 1 cut(s) 529
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 4 cut(s) 149, 282, 374, 463
XspI CTAG 4 cut(s) 51, 351, 612, 732
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.