RchiOBHm_Chr4g0413281

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000298
Physical Location & Seq
Reverse (-)
37531015 .. 37531980
966 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38381

Sequence Viewer

Length: 966 bp
ATGGACATTCTCTCAAGGCTCTCCTCAGTCAAGATCCTCTTCAACTGCAGGCGCGTTTGCAAAGAGTGGTTTAACATAATTTCTGACCCTCAGTTTGCTCGTCTACAGCTTCCCAGATCATCTATCGGCGTTGCAATGTTGATCCAGTCATATTCTGACAGAAAACAACAAAGCAATCTTGATTTCACCTATATAGAAGAAAAGGCTGGTTCTAGTCAACCCTGGTTGGAAAGAAAGAAATTTGCACCCCTTCCAATTTCTAAATATGCTCTGATAAACTCATGCAATGGCTTGCTTTGTTTGACAGGCAGTAAGGAAGGAGAATTTTCATTTTCATTTTATGTGTGCAATCCAATTTTGGGCCAGTACATCACCCTTCCTATTCCTTCACCTACTTTTAAGAAAGCATGGAACGGGCTCTGCTGTATGAATGATTTTGTTGCACTTGGCTTTAGTGCGTCCGCCAACAAATACAAGGTGCTGCAAACAGACTATGGCACCAGAGAGGCCTTTATATACATCCTTAGTACAAGAGTTTGGAAAAGCATCGGAAAAGCTCCTACAGGCACGTTCTGCCTTTCGTTCAATGCTCTTCTGCACGAGTCTCTTCATTGGATTTCATATGGCAATCCTTATCCTTATTGGAGGATATATTCTTTCAACTTTGAAAGAGAAAAGTTTCGGTCACTACCACCACCGTCTATAGATGATCAGAAGATGGATAATTTGTTGAGGTTGGGAGTGTTAGAAAGTTCTCTCCTTTTATGTGTCTTTCCACGGCATCGTGTACGATGTAATGGGTGGGTTATGAAGAATTACGGTGTTCAAGAGTCTTGGACTAAAGCTTTTGTTGTGGATCGAAATCCACAATTTGCCAGGACAGGTGTGTATGAACCAATTCTGTTCTTGAGCGATGGGGAAATCCTAATGAAAAGTGATTGTGGTGTGATTCGTTATAACTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

321

Amino Acids

36.91

Weight (kDa)

9.17

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 85 - 285 4.4e-10 F-box associated beta propeller domain
FBA_1 PF07734 90 - 292 1.6e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 957, 964
AccB1I GGYRCC 1 cut(s) 497
AccI GTMKAC 1 cut(s) 103
AccII CGCG 1 cut(s) 54
AciI CCGC 1 cut(s) 462
AclWI GGATC 3 cut(s) 28, 136, 864
AcsI RAATTY 2 cut(s) 239, 323
AfaI GTAC 3 cut(s) 368, 529, 789
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 5 cut(s) 43, 586, 661, 668, 827
AjnI CCWGG 2 cut(s) 221, 875
AluBI AGCT 3 cut(s) 109, 557, 845
AluI AGCT 3 cut(s) 109, 557, 845
Alw26I GTCTC 1 cut(s) 609
AlwI GGATC 3 cut(s) 28, 136, 864
AoxI GGCC 2 cut(s) 361, 507
ApeKI GCWGC 1 cut(s) 481
ApoI RAATTY 2 cut(s) 239, 323
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
Asp700I GAANNNNTTC 2 cut(s) 678, 897
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 3 cut(s) 178, 364, 381
BanI GGYRCC 1 cut(s) 497
BanII GRGCYC 1 cut(s) 420
BauI CACGAG 1 cut(s) 599
BbvI GCAGC 1 cut(s) 468
BccI CCATC 2 cut(s) 712, 908
BceAI ACGGC 1 cut(s) 794
BciT130I CCWGG 2 cut(s) 223, 877
BclI TGATCA 1 cut(s) 709
BcoDI GTCTC 1 cut(s) 609
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 4 cut(s) 46, 104, 561, 702
BisI GCNGC 1 cut(s) 482
BlsI GCNGC 1 cut(s) 483
Bme1390I CCNGG 2 cut(s) 223, 877
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 499
BmrFI CCNGG 2 cut(s) 223, 877
BmsI GCATC 2 cut(s) 555, 790
BpuEI CTTGAG 1 cut(s) 928
BsaBI GATNNNNATC 1 cut(s) 861
BsaJI CCNNGG 2 cut(s) 221, 776
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse1I ACTGG 2 cut(s) 145, 364
Bse3DI GCAATG 2 cut(s) 141, 292
Bse8I GATNNNNATC 1 cut(s) 861
BseBI CCWGG 2 cut(s) 223, 877
BseDI CCNNGG 2 cut(s) 221, 776
BseGI GGATG 1 cut(s) 519
BseJI GATNNNNATC 1 cut(s) 861
BseLI CCNNNNNNNGG 1 cut(s) 359
BseMI GCAATG 2 cut(s) 141, 292
BseMII CTCAG 2 cut(s) 39, 104
BseNI ACTGG 2 cut(s) 145, 364
BseRI GAGGAG 1 cut(s) 13
BseXI GCAGC 1 cut(s) 468
BsgI GTGCAG 1 cut(s) 581
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 2 cut(s) 363, 509
BshNI GGYRCC 1 cut(s) 497
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 1 cut(s) 609
BsnI GGCC 2 cut(s) 363, 509
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 5 cut(s) 33, 116, 141, 709, 856
BspACI CCGC 1 cut(s) 462
BspANI GGCC 2 cut(s) 363, 509
BspCNI CTCAG 2 cut(s) 38, 103
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 499
BspMAI CTGCAG 1 cut(s) 50
BspPI GGATC 3 cut(s) 28, 136, 864
BspQI GCTCTTC 1 cut(s) 597
BspT107I GGYRCC 1 cut(s) 497
BsrDI GCAATG 2 cut(s) 141, 292
BsrI ACTGG 2 cut(s) 145, 364
BssECI CCNNGG 2 cut(s) 221, 776
BssMI GATC 5 cut(s) 33, 116, 141, 709, 856
BssSI CACGAG 1 cut(s) 599
Bst2BI CACGAG 1 cut(s) 599
Bst2UI CCWGG 2 cut(s) 223, 877
Bst4CI ACNGT 2 cut(s) 699, 821
Bst6I CTCTTC 3 cut(s) 44, 597, 612
BstAPI GCANNNNNTGC 1 cut(s) 573
BstC8I GCNNGC 2 cut(s) 50, 293
BstDEI CTNAG 3 cut(s) 25, 90, 524
BstDSI CCRYGG 1 cut(s) 776
BstF5I GGATG 1 cut(s) 519
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 5 cut(s) 36, 119, 144, 712, 859
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 5 cut(s) 33, 116, 141, 709, 856
BstMWI GCNNNNNNNGC 1 cut(s) 573
BstNI CCWGG 2 cut(s) 223, 877
BstSCI CCNGG 2 cut(s) 221, 875
BstSFI CTRYAG 4 cut(s) 46, 104, 561, 702
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BsuRI GGCC 2 cut(s) 363, 509
BtgI CCRYGG 1 cut(s) 776
BtgZI GCGATG 1 cut(s) 927
BtsCI GGATG 1 cut(s) 519
Cac8I GCNNGC 2 cut(s) 50, 293
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 361
CseI GACGC 1 cut(s) 447
Csp6I GTAC 3 cut(s) 367, 528, 788
CviAII CATG 2 cut(s) 282, 408
CviQI GTAC 3 cut(s) 367, 528, 788
DdeI CTNAG 3 cut(s) 25, 90, 524
DpnI GATC 5 cut(s) 35, 118, 143, 711, 858
DpnII GATC 5 cut(s) 33, 116, 141, 709, 856
Eam1104I CTCTTC 3 cut(s) 44, 597, 612
EarI CTCTTC 3 cut(s) 44, 597, 612
EciI GGCGGA 1 cut(s) 451
Eco147I AGGCCT 1 cut(s) 509
Eco24I GRGCYC 1 cut(s) 420
EcoRII CCWGG 2 cut(s) 221, 875
EcoT38I GRGCYC 1 cut(s) 420
FaeI CATG 2 cut(s) 285, 411
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FatI CATG 2 cut(s) 281, 407
FauNDI CATATG 1 cut(s) 622
FbaI TGATCA 1 cut(s) 709
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 482
FokI GGATG 1 cut(s) 506
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 482
FspBI CTAG 1 cut(s) 213
GlaI GCGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 482
HaeIII GGCC 2 cut(s) 363, 509
HgaI GACGC 1 cut(s) 447
HhaI GCGC 1 cut(s) 54
Hin1II CATG 2 cut(s) 285, 411
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HincII GTYRAC 1 cut(s) 218
HindII GTYRAC 1 cut(s) 218
HindIII AAGCTT 1 cut(s) 843
HinfI GANTC 3 cut(s) 602, 830, 949
HphI GGTGA 3 cut(s) 178, 364, 381
Hpy166II GTNNAC 3 cut(s) 104, 218, 788
Hpy188I TCNGA 5 cut(s) 85, 157, 273, 551, 714
Hpy188III TCNNGA 4 cut(s) 31, 179, 827, 907
Hpy8I GTNNAC 3 cut(s) 104, 218, 788
HpyAV CCTTC 4 cut(s) 260, 311, 386, 396
HpyCH4III ACNGT 2 cut(s) 699, 821
HpyCH4IV ACGT 1 cut(s) 569
HpyCH4V TGCA 9 cut(s) 48, 60, 134, 245, 285, 348, 443, 484, 598
HpyF10VI GCNNNNNNNGC 1 cut(s) 573
HpyF3I CTNAG 3 cut(s) 25, 90, 524
HpySE526I ACGT 1 cut(s) 569
Hsp92II CATG 2 cut(s) 285, 411
HspAI GCGC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 709
Kzo9I GATC 5 cut(s) 33, 116, 141, 709, 856
LguI GCTCTTC 1 cut(s) 597
LmnI GCTCC 1 cut(s) 562
Lsp1109I GCAGC 1 cut(s) 468
LweI GCATC 2 cut(s) 555, 790
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 569
MaeIII GTNAC 1 cut(s) 684
MalI GATC 5 cut(s) 35, 118, 143, 711, 858
MboI GATC 5 cut(s) 33, 116, 141, 709, 856
MboII GAAGA 6 cut(s) 31, 209, 584, 599, 727, 823
MflI RGATCY 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 420
MluCI AATT 9 cut(s) 78, 239, 255, 323, 354, 724, 814, 869, 897
MlyI GAGTC 2 cut(s) 611, 839
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 6 cut(s) 34, 47, 99, 499, 639, 726
MroXI GAANNNNTTC 2 cut(s) 678, 897
MseI TTAA 2 cut(s) 72, 399
MspR9I CCNGG 2 cut(s) 223, 877
MvaI CCWGG 2 cut(s) 223, 877
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 573
NdeI CATATG 1 cut(s) 622
NdeII GATC 5 cut(s) 33, 116, 141, 709, 856
NlaIII CATG 2 cut(s) 285, 411
NlaIV GGNNCC 1 cut(s) 499
NmuCI GTSAC 1 cut(s) 684
PceI AGGCCT 1 cut(s) 509
PciSI GCTCTTC 1 cut(s) 597
PdmI GAANNNNTTC 2 cut(s) 678, 897
PfeI GAWTC 1 cut(s) 949
PkrI GCNGC 1 cut(s) 483
PleI GAGTC 2 cut(s) 610, 838
PpsI GAGTC 2 cut(s) 610, 838
PsiI TTATAA 2 cut(s) 957, 964
Psp6I CCWGG 2 cut(s) 221, 875
PspGI CCWGG 2 cut(s) 221, 875
PspN4I GGNNCC 1 cut(s) 499
PspPI GGNCC 1 cut(s) 361
PstI CTGCAG 1 cut(s) 50
PsuI RGATCY 1 cut(s) 33
RsaI GTAC 3 cut(s) 368, 529, 789
RsaNI GTAC 3 cut(s) 367, 528, 788
SapI GCTCTTC 1 cut(s) 597
SaqAI TTAA 2 cut(s) 72, 399
SatI GCNGC 1 cut(s) 482
Sau3AI GATC 5 cut(s) 33, 116, 141, 709, 856
Sau96I GGNCC 1 cut(s) 361
SchI GAGTC 2 cut(s) 611, 839
ScrFI CCNGG 2 cut(s) 223, 877
SduI GDGCHC 1 cut(s) 420
SetI ASST 9 cut(s) 111, 191, 394, 480, 559, 572, 737, 847, 886
SfaNI GCATC 2 cut(s) 555, 790
SfcI CTRYAG 4 cut(s) 46, 104, 561, 702
SmlI CTYRAG 2 cut(s) 13, 907
SmoI CTYRAG 2 cut(s) 13, 907
Sse9I AATT 9 cut(s) 78, 239, 255, 323, 354, 724, 814, 869, 897
SseBI AGGCCT 1 cut(s) 509
SsiI CCGC 1 cut(s) 462
SspMI CTAG 1 cut(s) 213
StuI AGGCCT 1 cut(s) 509
StyD4I CCNGG 2 cut(s) 221, 875
TaaI ACNGT 2 cut(s) 699, 821
TaiI ACGT 1 cut(s) 572
TaqI TCGA 1 cut(s) 859
TaqII GACCGA 1 cut(s) 672
TasI AATT 9 cut(s) 78, 239, 255, 323, 354, 724, 814, 869, 897
TatI WGTACW 2 cut(s) 366, 527
TfiI GAWTC 1 cut(s) 949
Tru1I TTAA 2 cut(s) 72, 399
Tru9I TTAA 2 cut(s) 72, 399
TseFI GTSAC 1 cut(s) 684
TseI GCWGC 1 cut(s) 481
Tsp45I GTSAC 1 cut(s) 684
TspDTI ATGAA 8 cut(s) 318, 324, 443, 599, 609, 824, 906, 944
XapI RAATTY 2 cut(s) 239, 323
XmiI GTMKAC 1 cut(s) 103
XmnI GAANNNNTTC 2 cut(s) 678, 897
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.