RLG00000007789

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000298
Physical Location & Seq
Reverse (-)
21058512 .. 21060525
2014 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007789

Sequence Viewer

Length: 1236 bp
ATGAGACGAAGGAAAGGAGTAGCGAACATTTCACCTATCAACACGGAAGAACAAGAAGAATGGCAACCCAAAGGTCCCTGCAGATTCCAACAGCTTCCACAGGCTTGTGTCATAGACATTCTCTCAAGGCTCTTGGTCAAGACCCTCTTCAACTGCAGGTGCGTATGCAAATCTTGGCTCTCCATTATTTCCGACCCTCATTTTTCCCACATGCGCCTTTCGAAATTACCCATTGGGATACTGATCAAGACCAGACCTGAAAAAAGGAAATCGAGGGTGATTGATTTTACCCAAATTGAAGAATGTGCTGGTTCTCACTTCCAGCTTGAGAAAATGAGATTTAGTACTAAAAATAGCTTACCACCCCTTTCTGAATTTGAGTTGATCAACTCTTGCAATGGTTTGCTTCTTTTGTCCGGCGCTGGTCCAATAAGAGATGGCCCAATGTATGTGTGCAATCCAATTTTAGGTGAATTCATCACTCTTCCACCTACTGATGGGAGGAGGCTATGCTATAGCTTTTTCGGACTTGGTTATCGTGTCGCAACCAAGGAATACAAGGTGCTGCAATGCTCCGATGAGAATGAGGCTCAGATATACACAATTGGTTCGAGAGTTTGGAAAAGCATTGGGAAAACTCCTCGGGACTCTGCCCAGTTAGCACCATTCAATGCTGTTCTGCATGGAGCTCTTCATTGGCTTTCCTTTGGTGGAAGAACATTTGAGTTCATACATGCATTCAACTTTGGAACAGAACAGTTCCGCACACTGCCTCCACCTGGTTACTTTGAACCATTTGAGAAGCAATTTAAAGAGTGTCTGAAATTGGGAGTGTTAGACGGTTGTCTGTTTTTATCCGTGTGTGGTGATGATCCTAGCAAATTTGACATGTGGCTTATGAAGGATTACGGTGTCCAAGAGTCTTGGACGAAAACTCTGGTTGTTGAAGCCTTGTATCTACCAACGGAACTTGCCATTGATGTTTACGAACCACTGGTGTTTTTGAGAAATGGGGACATCCTGTTGTGCTACAATGACTGGATTGTGGTTTGTTATAACCAAGGAACAAAGAGTCTCAGGGAAACTAGAGTTGCTCGGACTCAGTCACATTTTCGTGCAATTGGTTACAACCCATGCTTTTTTTCTCTCCATGATGTTGCAAACGGAGAGGAGGTGAAAAGGGTAAGAGACAAAAAGAACTCCAAGAAGCCCTTTGGCGAAGGGAGTAGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

412

Amino Acids

46.84

Weight (kDa)

8.69

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 29 - 67 6.4e-08 F-box-like
F-box PF00646 30 - 68 1.6e-08 F-box domain
FBA_3 PF08268 107 - 370 1.7e-17 F-box associated beta propeller domain
FBA_1 PF07734 123 - 346 8.9e-24 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1056
AarI CACCTGC 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 147
AciI CCGC 1 cut(s) 763
AclWI GGATC 1 cut(s) 866
AcsI RAATTY 3 cut(s) 374, 473, 881
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 3 cut(s) 467, 497, 779
AflIII ACRYGT 1 cut(s) 888
AgsI TTSAA 6 cut(s) 151, 299, 670, 742, 791, 947
AjnI CCWGG 1 cut(s) 778
AluBI AGCT 5 cut(s) 94, 325, 357, 519, 689
AluI AGCT 5 cut(s) 94, 325, 357, 519, 689
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 2 cut(s) 1079, 1182
AlwI GGATC 1 cut(s) 866
Ama87I CYCGRG 1 cut(s) 642
AoxI GGCC 1 cut(s) 439
ApeKI GCWGC 1 cut(s) 565
ApoI RAATTY 3 cut(s) 374, 473, 881
AspLEI GCGC 2 cut(s) 216, 422
AspS9I GGNCC 3 cut(s) 74, 425, 440
AsuHPI GGTGA 5 cut(s) 24, 289, 482, 878, 1186
AsuII TTCGAA 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 642
AvaII GGWCC 2 cut(s) 74, 425
BanII GRGCYC 1 cut(s) 691
Bbv12I GWGCWC 1 cut(s) 691
BbvI GCAGC 1 cut(s) 552
BccI CCATC 2 cut(s) 431, 491
BciT130I CCWGG 1 cut(s) 780
BciVI GTATCC 1 cut(s) 231
BclI TGATCA 2 cut(s) 243, 384
BcoDI GTCTC 2 cut(s) 1079, 1182
BfaI CTAG 2 cut(s) 876, 1086
BfmI CTRYAG 3 cut(s) 79, 154, 514
BfoI RGCGCY 1 cut(s) 423
BfuAI ACCTGC 1 cut(s) 147
BfuI GTATCC 1 cut(s) 231
BisI GCNGC 1 cut(s) 566
BlsI GCNGC 1 cut(s) 567
BmcAI AGTACT 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 780
Bme18I GGWCC 2 cut(s) 74, 425
BmeT110I CYCGRG 1 cut(s) 642
BmgT120I GGNCC 3 cut(s) 74, 425, 440
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 780
BmrI ACTGGG 1 cut(s) 649
BmuI ACTGGG 1 cut(s) 649
BoxI GACNNNNGTC 1 cut(s) 843
Bpu14I TTCGAA 1 cut(s) 221
BpuEI CTTGAG 2 cut(s) 109, 347
BsaBI GATNNNNATC 1 cut(s) 242
BsaJI CCNNGG 3 cut(s) 549, 641, 1060
BsaXI ACNNNNNCTCC 5 cut(s) 757, 787, 1158, 1188, 1216
Bsc4I CCNNNNNNNGG 3 cut(s) 467, 497, 779
Bse1I ACTGG 3 cut(s) 655, 999, 1043
Bse3DI GCAATG 2 cut(s) 403, 575
Bse8I GATNNNNATC 1 cut(s) 242
BseBI CCWGG 1 cut(s) 780
BseDI CCNNGG 3 cut(s) 549, 641, 1060
BseGI GGATG 1 cut(s) 1017
BseJI GATNNNNATC 1 cut(s) 242
BseLI CCNNNNNNNGG 3 cut(s) 467, 497, 779
BseMI GCAATG 2 cut(s) 403, 575
BseMII CTCAG 3 cut(s) 605, 1090, 1115
BseNI ACTGG 3 cut(s) 655, 999, 1043
BseRI GAGGAG 3 cut(s) 517, 630, 1184
BseXI GCAGC 1 cut(s) 552
BshFI GGCC 1 cut(s) 441
BsiHKAI GWGCWC 1 cut(s) 691
BsiHKCI CYCGRG 1 cut(s) 642
BsiSI CCGG 1 cut(s) 417
BslFI GGGAC 3 cut(s) 60, 659, 1028
BslI CCNNNNNNNGG 3 cut(s) 467, 497, 779
BsmAI GTCTC 2 cut(s) 1079, 1182
BsmFI GGGAC 3 cut(s) 60, 659, 1028
BsmI GAATGC 1 cut(s) 737
BsnI GGCC 1 cut(s) 441
BsoBI CYCGRG 1 cut(s) 642
Bsp119I TTCGAA 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 691
Bsp143I GATC 3 cut(s) 243, 384, 871
BspACI CCGC 1 cut(s) 763
BspANI GGCC 1 cut(s) 441
BspCNI CTCAG 3 cut(s) 604, 1089, 1114
BspLI GGNNCC 1 cut(s) 76
BspMAI CTGCAG 2 cut(s) 83, 158
BspMI ACCTGC 1 cut(s) 147
BspPI GGATC 1 cut(s) 866
BspQI GCTCTTC 1 cut(s) 696
BspT104I TTCGAA 1 cut(s) 221
BsrDI GCAATG 2 cut(s) 403, 575
BsrI ACTGG 3 cut(s) 655, 999, 1043
BssECI CCNNGG 3 cut(s) 549, 641, 1060
BssMI GATC 3 cut(s) 243, 384, 871
BssT1I CCWWGG 2 cut(s) 549, 1060
Bst2UI CCWGG 1 cut(s) 780
Bst4CI ACNGT 3 cut(s) 759, 842, 911
Bst6I CTCTTC 3 cut(s) 152, 489, 696
BstBI TTCGAA 1 cut(s) 221
BstDEI CTNAG 3 cut(s) 591, 1076, 1101
BstF5I GGATG 1 cut(s) 1017
BstH2I RGCGCY 1 cut(s) 423
BstHHI GCGC 2 cut(s) 216, 422
BstKTI GATC 3 cut(s) 246, 387, 874
BstMAI GTCTC 2 cut(s) 1079, 1182
BstMBI GATC 3 cut(s) 243, 384, 871
BstMWI GCNNNNNNNGC 1 cut(s) 659
BstNI CCWGG 1 cut(s) 780
BstNSI RCATGY 3 cut(s) 214, 737, 892
BstPAI GACNNNNGTC 1 cut(s) 843
BstSCI CCNGG 1 cut(s) 778
BstSFI CTRYAG 3 cut(s) 79, 154, 514
BstV1I GCAGC 1 cut(s) 552
BsuI GTATCC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 441
BtsCI GGATG 1 cut(s) 1017
BtsI GCAGTG 1 cut(s) 767
BtsIMutI CAGTG 2 cut(s) 767, 992
BveI ACCTGC 1 cut(s) 147
CfoI GCGC 2 cut(s) 216, 422
Cfr13I GGNCC 3 cut(s) 74, 425, 440
CsiI ACCWGGT 1 cut(s) 778
Csp6I GTAC 1 cut(s) 345
CviAII CATG 6 cut(s) 211, 683, 734, 889, 1134, 1151
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 3 cut(s) 591, 1076, 1101
DpnI GATC 3 cut(s) 245, 386, 873
DpnII GATC 3 cut(s) 243, 384, 871
DraI TTTAAA 1 cut(s) 811
Eam1104I CTCTTC 3 cut(s) 152, 489, 696
EarI CTCTTC 3 cut(s) 152, 489, 696
Ecl136II GAGCTC 1 cut(s) 689
Eco130I CCWWGG 2 cut(s) 549, 1060
Eco24I GRGCYC 1 cut(s) 691
Eco47I GGWCC 2 cut(s) 74, 425
Eco53kI GAGCTC 1 cut(s) 689
Eco88I CYCGRG 1 cut(s) 642
EcoICRI GAGCTC 1 cut(s) 689
EcoO109I RGGNCCY 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 473
EcoRII CCWGG 1 cut(s) 778
EcoT14I CCWWGG 2 cut(s) 549, 1060
EcoT22I ATGCAT 1 cut(s) 739
EcoT38I GRGCYC 1 cut(s) 691
ErhI CCWWGG 2 cut(s) 549, 1060
FaeI CATG 6 cut(s) 214, 686, 737, 892, 1137, 1154
FalI AAGNNNNNCTT 4 cut(s) 131, 163, 1196, 1228
FaqI GGGAC 3 cut(s) 60, 659, 1028
FatI CATG 6 cut(s) 210, 682, 733, 888, 1133, 1150
FbaI TGATCA 2 cut(s) 243, 384
Fnu4HI GCNGC 1 cut(s) 566
FokI GGATG 1 cut(s) 1004
FriOI GRGCYC 1 cut(s) 691
Fsp4HI GCNGC 1 cut(s) 566
FspBI CTAG 2 cut(s) 876, 1086
GlaI GCGC 2 cut(s) 215, 421
GluI GCNGC 1 cut(s) 566
HaeII RGCGCY 1 cut(s) 423
HaeIII GGCC 1 cut(s) 441
HapII CCGG 1 cut(s) 417
HhaI GCGC 2 cut(s) 216, 422
Hin1II CATG 6 cut(s) 214, 686, 737, 892, 1137, 1154
Hin6I GCGC 2 cut(s) 214, 420
HinP1I GCGC 2 cut(s) 214, 420
HinfI GANTC 5 cut(s) 84, 647, 920, 1072, 1099
HpaII CCGG 1 cut(s) 417
HphI GGTGA 5 cut(s) 24, 289, 482, 878, 1186
Hpy166II GTNNAC 1 cut(s) 985
Hpy188I TCNGA 7 cut(s) 193, 373, 527, 577, 594, 822, 1098
Hpy188III TCNNGA 4 cut(s) 139, 247, 612, 644
Hpy8I GTNNAC 1 cut(s) 985
HpyAV CCTTC 3 cut(s) 3, 895, 1214
HpyCH4III ACNGT 3 cut(s) 759, 842, 911
HpyF10VI GCNNNNNNNGC 1 cut(s) 659
HpyF3I CTNAG 3 cut(s) 591, 1076, 1101
Hsp92II CATG 6 cut(s) 214, 686, 737, 892, 1137, 1154
HspAI GCGC 2 cut(s) 214, 420
Ksp22I TGATCA 2 cut(s) 243, 384
Kzo9I GATC 3 cut(s) 243, 384, 871
LguI GCTCTTC 1 cut(s) 696
LmnI GCTCC 2 cut(s) 578, 686
Lsp1109I GCAGC 1 cut(s) 552
MabI ACCWGGT 1 cut(s) 778
MaeI CTAG 2 cut(s) 876, 1086
MaeIII GTNAC 3 cut(s) 782, 1104, 1124
MalI GATC 3 cut(s) 245, 386, 873
MboI GATC 3 cut(s) 243, 384, 871
MboII GAAGA 7 cut(s) 59, 68, 139, 311, 476, 683, 726
MfeI CAATTG 2 cut(s) 603, 1119
MhlI GDGCHC 1 cut(s) 691
MlyI GAGTC 4 cut(s) 641, 929, 1081, 1093
MmeI TCCRAC 2 cut(s) 112, 216
Mph1103I ATGCAT 1 cut(s) 739
MseI TTAA 1 cut(s) 810
MslI CAYNNNNRTG 1 cut(s) 1113
MspI CCGG 1 cut(s) 417
MspR9I CCNGG 1 cut(s) 780
MunI CAATTG 2 cut(s) 603, 1119
Mva1269I GAATGC 1 cut(s) 737
MvaI CCWGG 1 cut(s) 780
MwoI GCNNNNNNNGC 1 cut(s) 659
NdeII GATC 3 cut(s) 243, 384, 871
NlaIII CATG 6 cut(s) 214, 686, 737, 892, 1137, 1154
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 1104
NsiI ATGCAT 1 cut(s) 739
NspI RCATGY 3 cut(s) 214, 737, 892
NspV TTCGAA 1 cut(s) 221
PaqCI CACCTGC 1 cut(s) 147
PciI ACATGT 1 cut(s) 888
PciSI GCTCTTC 1 cut(s) 696
PctI GAATGC 1 cut(s) 737
PfeI GAWTC 1 cut(s) 84
PflFI GACNNNGTC 1 cut(s) 1102
PkrI GCNGC 1 cut(s) 567
PleI GAGTC 4 cut(s) 641, 928, 1080, 1093
PpsI GAGTC 4 cut(s) 641, 928, 1080, 1093
PpuMI RGGWCCY 1 cut(s) 74
PscI ACATGT 1 cut(s) 888
PshAI GACNNNNGTC 1 cut(s) 843
PsiI TTATAA 1 cut(s) 1056
Psp124BI GAGCTC 1 cut(s) 691
Psp5II RGGWCCY 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 778
PspGI CCWGG 1 cut(s) 778
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 3 cut(s) 74, 425, 440
PspPPI RGGWCCY 1 cut(s) 74
PstI CTGCAG 2 cut(s) 83, 158
PsyI GACNNNGTC 1 cut(s) 1102
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 1113
SacI GAGCTC 1 cut(s) 691
SapI GCTCTTC 1 cut(s) 696
SaqAI TTAA 1 cut(s) 810
SatI GCNGC 1 cut(s) 566
Sau3AI GATC 3 cut(s) 243, 384, 871
Sau96I GGNCC 3 cut(s) 74, 425, 440
ScaI AGTACT 1 cut(s) 346
SchI GAGTC 4 cut(s) 641, 929, 1081, 1093
ScrFI CCNGG 1 cut(s) 780
SduI GDGCHC 1 cut(s) 691
SexAI ACCWGGT 1 cut(s) 778
SfcI CTRYAG 3 cut(s) 79, 154, 514
SfuI TTCGAA 1 cut(s) 221
SinI GGWCC 2 cut(s) 74, 425
SmiMI CAYNNNNRTG 1 cut(s) 1113
SmlI CTYRAG 2 cut(s) 124, 326
SmoI CTYRAG 2 cut(s) 124, 326
SsiI CCGC 1 cut(s) 763
SspMI CTAG 2 cut(s) 876, 1086
SstI GAGCTC 1 cut(s) 691
StyD4I CCNGG 1 cut(s) 778
StyI CCWWGG 2 cut(s) 549, 1060
TaaI ACNGT 3 cut(s) 759, 842, 911
TaqI TCGA 3 cut(s) 221, 272, 611
TatI WGTACW 1 cut(s) 344
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 1 cut(s) 810
Tru9I TTAA 1 cut(s) 810
TscAI CASTG 2 cut(s) 774, 999
TseFI GTSAC 1 cut(s) 1104
TseI GCWGC 1 cut(s) 565
Tsp45I GTSAC 1 cut(s) 1104
TspDTI ATGAA 4 cut(s) 466, 683, 718, 914
TspGWI ACGGA 4 cut(s) 59, 847, 980, 1179
TspRI CASTG 2 cut(s) 774, 999
Tth111I GACNNNGTC 1 cut(s) 1102
VpaK11BI GGWCC 2 cut(s) 74, 425
XapI RAATTY 3 cut(s) 374, 473, 881
XceI RCATGY 3 cut(s) 214, 737, 892
XspI CTAG 2 cut(s) 876, 1086
ZrmI AGTACT 1 cut(s) 346
Zsp2I ATGCAT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.