pycom13g15350

peptide-methionine (R)-S-oxide reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000298
Physical Location & Seq
Forward (+)
11184516 .. 11186181
1666 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g15350.1

Sequence Viewer

Length: 1143 bp
ATGGCAGCCGCCCAGACTTCCCTCCAAATTTCAACTCCTCCAGCGGTCTATAGTCATGGACATCCTCTCAAGGCTCCCATCAAAACCCTCTTCGACTGCAGCATAACAAGAAGGCTCGATTTTACCCGGATTGAGGAATCCTCCGGTTCTCGCTTTCGCTACGAAAAACTGAGGTTTACACCCAAATTTAGCCTGCCCATTTCTGAATTTAATCTGATAAACTCTTGCAATGGTTTAGTTTGCTTGTCTGGACCCGAAAGAGGGGACCTTTTGTATGTCTGCAATCCAATTTTGGGCGAGTTCATCACCGTGCCGCGGAGCGATAGGGCTAGGCCTAATTTTACCTCCATTGGACTTGGATTTAGTGTTGGGACTAATGAGTATAAGGTGTTGCAAACGTTTGTTCCGTTGAGTGGACCCATCAGGAATGATAAGTGCAGCTATGAAGCTGAGATATACACCATTGGTACAGGGGTTTGGAGAAGCATGGGAAGTGCTTCTGGGAGCCTTGGTTGTCAGTTGCCCTTCAATGCTTATCTTCATGGAGCTCTGCATTGGGTTTCTCGTGGTAGCGATGTTTCTGAGCTGACAAATTCCTTCAACTTTGAAGGGGAACAGTTTCAGGCAATTGCCCCACCGAGCTACTTTGGACCGCTGGAGAAGCAATTTTCAGACTGTTTGAAGTTGGGAGTGTTGGAAGGTTGTCTCGTTTTGTGTGTGTTTGGGGACGATTCTAGTAAATTTGTTATGTGGGTTATGAGGGAGTATGGTATCCGAGAGTCTTGGACTAAAACTCTTGTTATCGAAAACTTGTATCCGAGAGAACTTAGTTGCGATTTGTATGAACCCATGGTGTTTTTGAGAAATGGGGAAATTGTAATGTCTTACAATGATTGGGCTGTGGTTTGCTATAACCAGAAAAGGATGAGTCTCAGAGAAACTAGGATTACTCAGACCCGAAATCAGTTTCATGCAATTGGTTACAGTCGCTGCTTTGTTTCACTCTATAATGTTTCAAGGGCAGAGGAGGTGAAGAGGTACAGCAATTTTTCTTCACTTATATACATGCATAGATTTAATTGGTGCAAGGCTGTAGGAAACGCAACAATCTTCCTGCTGAAGAGAGTTCGATCATCCTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

381

Amino Acids

43.1

Weight (kDa)

8.72

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 64 - 324 5.8e-21 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 66 - 214 3.9e-07 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 316
AciI CCGC 5 cut(s) 9, 44, 314, 316, 653
AclI AACGTT 1 cut(s) 398
AcsI RAATTY 5 cut(s) 27, 185, 206, 592, 740
AcuI CTGAAG 1 cut(s) 1139
AfaI GTAC 2 cut(s) 469, 1040
AfiI CCNNNNNNNGG 6 cut(s) 133, 260, 261, 293, 315, 413
AgsI TTSAA 6 cut(s) 33, 529, 601, 608, 682, 1017
AluBI AGCT 5 cut(s) 441, 449, 548, 586, 642
AluI AGCT 5 cut(s) 441, 449, 548, 586, 642
Alw21I GWGCWC 1 cut(s) 550
Alw26I GTCTC 2 cut(s) 710, 935
AlwNI CAGNNNCTG 1 cut(s) 990
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 4 cut(s) 5, 99, 438, 990
ApoI RAATTY 5 cut(s) 27, 185, 206, 592, 740
Asp700I GAANNNNTTC 2 cut(s) 496, 618
AspS9I GGNCC 4 cut(s) 251, 265, 416, 650
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 298, 1042
AvaII GGWCC 4 cut(s) 251, 265, 416, 650
BaeI ACNNNNGTAYC 2 cut(s) 459, 492
BanII GRGCYC 1 cut(s) 550
BauI CACGAG 2 cut(s) 564, 1138
Bbv12I GWGCWC 1 cut(s) 550
BbvI GCAGC 4 cut(s) 17, 111, 450, 977
BccI CCATC 2 cut(s) 86, 428
BciVI GTATCC 2 cut(s) 782, 825
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 710, 935
BfaI CTAG 3 cut(s) 330, 735, 942
BfmI CTRYAG 3 cut(s) 49, 97, 1092
BfuI GTATCC 2 cut(s) 782, 825
BisI GCNGC 6 cut(s) 6, 9, 100, 314, 439, 991
BlsI GCNGC 6 cut(s) 7, 10, 101, 315, 440, 992
Bme1390I CCNGG 1 cut(s) 127
Bme18I GGWCC 4 cut(s) 251, 265, 416, 650
BmgT120I GGNCC 4 cut(s) 251, 265, 416, 650
BmiI GGNNCC 5 cut(s) 75, 253, 266, 418, 506
BmrFI CCNGG 1 cut(s) 127
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BpmI CTGGAG 2 cut(s) 24, 677
BpuEI CTTGAG 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 127
BsaJI CCNNGG 3 cut(s) 314, 508, 849
BsaWI WCCGGW 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 496, 526
Bsc4I CCNNNNNNNGG 6 cut(s) 133, 260, 261, 293, 315, 413
Bse3DI GCAATG 1 cut(s) 235
BseDI CCNNGG 3 cut(s) 314, 508, 849
BseGI GGATG 3 cut(s) 61, 930, 1133
BseLI CCNNNNNNNGG 6 cut(s) 133, 260, 261, 293, 315, 413
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 5 cut(s) 161, 441, 573, 946, 965
BseRI GAGGAG 2 cut(s) 27, 1040
BseXI GCAGC 4 cut(s) 17, 111, 450, 977
BsgI GTGCAG 1 cut(s) 457
Bsh1236I CGCG 1 cut(s) 316
BshFI GGCC 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 550
BsiSI CCGG 2 cut(s) 127, 144
BslFI GGGAC 3 cut(s) 278, 385, 740
BslI CCNNNNNNNGG 6 cut(s) 133, 260, 261, 293, 315, 413
BsmAI GTCTC 2 cut(s) 710, 935
BsmFI GGGAC 3 cut(s) 278, 385, 740
BsnI GGCC 1 cut(s) 334
Bsp1286I GDGCHC 1 cut(s) 550
Bsp143I GATC 1 cut(s) 1130
Bsp19I CCATGG 1 cut(s) 849
BspACI CCGC 5 cut(s) 9, 44, 314, 316, 653
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 5 cut(s) 162, 442, 574, 945, 964
BspFNI CGCG 1 cut(s) 316
BspLI GGNNCC 5 cut(s) 75, 253, 266, 418, 506
BspMAI CTGCAG 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 235
BssECI CCNNGG 3 cut(s) 314, 508, 849
BssMI GATC 1 cut(s) 1130
BssSI CACGAG 2 cut(s) 564, 1138
BssT1I CCWWGG 2 cut(s) 508, 849
Bst2BI CACGAG 2 cut(s) 564, 1138
Bst4CI ACNGT 4 cut(s) 310, 618, 677, 986
Bst6I CTCTTC 3 cut(s) 95, 1028, 1115
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 6 cut(s) 170, 450, 582, 827, 932, 951
BstDSI CCRYGG 2 cut(s) 314, 849
BstF5I GGATG 3 cut(s) 61, 930, 1133
BstFNI CGCG 1 cut(s) 316
BstKTI GATC 1 cut(s) 1133
BstMAI GTCTC 2 cut(s) 710, 935
BstMBI GATC 1 cut(s) 1130
BstMWI GCNNNNNNNGC 1 cut(s) 661
BstNSI RCATGY 1 cut(s) 1069
BstSCI CCNGG 1 cut(s) 125
BstSFI CTRYAG 3 cut(s) 49, 97, 1092
BstUI CGCG 1 cut(s) 316
BstV1I GCAGC 4 cut(s) 17, 111, 450, 977
BsuI GTATCC 2 cut(s) 782, 825
BsuRI GGCC 1 cut(s) 334
BtgI CCRYGG 2 cut(s) 314, 849
BtgZI GCGATG 1 cut(s) 588
BtsCI GGATG 3 cut(s) 61, 930, 1133
Cac8I GCNNGC 1 cut(s) 194
CaiI CAGNNNCTG 1 cut(s) 990
Cfr13I GGNCC 4 cut(s) 251, 265, 416, 650
Cfr42I CCGCGG 1 cut(s) 317
Csp6I GTAC 2 cut(s) 468, 1039
CviAII CATG 6 cut(s) 56, 487, 542, 850, 971, 1066
CviQI GTAC 2 cut(s) 468, 1039
DdeI CTNAG 6 cut(s) 170, 450, 582, 827, 932, 951
DpnI GATC 1 cut(s) 1132
DpnII GATC 1 cut(s) 1130
Eam1104I CTCTTC 3 cut(s) 95, 1028, 1115
EarI CTCTTC 3 cut(s) 95, 1028, 1115
Ecl136II GAGCTC 1 cut(s) 548
Eco130I CCWWGG 2 cut(s) 508, 849
Eco147I AGGCCT 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 550
Eco47I GGWCC 4 cut(s) 251, 265, 416, 650
Eco53kI GAGCTC 1 cut(s) 548
Eco57I CTGAAG 1 cut(s) 1139
EcoICRI GAGCTC 1 cut(s) 548
EcoO109I RGGNCCY 1 cut(s) 265
EcoT14I CCWWGG 2 cut(s) 508, 849
EcoT22I ATGCAT 1 cut(s) 1071
EcoT38I GRGCYC 1 cut(s) 550
ErhI CCWWGG 2 cut(s) 508, 849
FaeI CATG 6 cut(s) 59, 490, 545, 853, 974, 1069
FaqI GGGAC 3 cut(s) 278, 385, 740
FatI CATG 6 cut(s) 55, 486, 541, 849, 970, 1065
Fnu4HI GCNGC 6 cut(s) 6, 9, 100, 314, 439, 991
FokI GGATG 3 cut(s) 48, 937, 1120
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 6 cut(s) 6, 9, 100, 314, 439, 991
FspBI CTAG 3 cut(s) 330, 735, 942
GluI GCNGC 6 cut(s) 6, 9, 100, 314, 439, 991
GsuI CTGGAG 2 cut(s) 24, 677
HaeIII GGCC 1 cut(s) 334
HapII CCGG 2 cut(s) 127, 144
Hin1II CATG 6 cut(s) 59, 490, 545, 853, 974, 1069
HinfI GANTC 4 cut(s) 137, 731, 779, 928
HpaII CCGG 2 cut(s) 127, 144
HphI GGTGA 2 cut(s) 298, 1042
Hpy166II GTNNAC 2 cut(s) 177, 416
Hpy188I TCNGA 8 cut(s) 205, 216, 583, 673, 776, 819, 935, 954
Hpy188III TCNNGA 3 cut(s) 249, 424, 1140
Hpy8I GTNNAC 2 cut(s) 177, 416
HpyAV CCTTC 5 cut(s) 105, 535, 602, 607, 692
HpyCH4III ACNGT 4 cut(s) 310, 618, 677, 986
HpyCH4IV ACGT 1 cut(s) 398
HpyCH4V TGCA 9 cut(s) 99, 228, 282, 394, 438, 553, 974, 1069, 1086
HpyF10VI GCNNNNNNNGC 1 cut(s) 661
HpyF3I CTNAG 6 cut(s) 170, 450, 582, 827, 932, 951
HpySE526I ACGT 1 cut(s) 398
Hsp92II CATG 6 cut(s) 59, 490, 545, 853, 974, 1069
KspI CCGCGG 1 cut(s) 317
Kzo9I GATC 1 cut(s) 1130
LmnI GCTCC 4 cut(s) 79, 318, 504, 545
Lsp1109I GCAGC 4 cut(s) 17, 111, 450, 977
MaeI CTAG 3 cut(s) 330, 735, 942
MaeII ACGT 1 cut(s) 398
MaeIII GTNAC 1 cut(s) 980
MalI GATC 1 cut(s) 1132
MboI GATC 1 cut(s) 1130
MboII GAAGA 6 cut(s) 82, 530, 1044, 1045, 1102, 1132
MfeI CAATTG 2 cut(s) 627, 975
MhlI GDGCHC 1 cut(s) 550
MlyI GAGTC 2 cut(s) 788, 937
MmeI TCCRAC 1 cut(s) 675
Mph1103I ATGCAT 1 cut(s) 1071
MroXI GAANNNNTTC 2 cut(s) 496, 618
MseI TTAA 2 cut(s) 210, 1077
MslI CAYNNNNRTG 2 cut(s) 308, 1138
MspA1I CMGCKG 3 cut(s) 44, 316, 655
MspI CCGG 2 cut(s) 127, 144
MspR9I CCNGG 1 cut(s) 127
MunI CAATTG 2 cut(s) 627, 975
MvnI CGCG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 661
NciI CCSGG 1 cut(s) 127
NcoI CCATGG 1 cut(s) 849
NdeII GATC 1 cut(s) 1130
NlaIII CATG 6 cut(s) 59, 490, 545, 853, 974, 1069
NlaIV GGNNCC 5 cut(s) 75, 253, 266, 418, 506
NsiI ATGCAT 1 cut(s) 1071
NspI RCATGY 1 cut(s) 1069
PceI AGGCCT 1 cut(s) 334
PcsI WCGNNNNNNNCGW 1 cut(s) 404
PdmI GAANNNNTTC 2 cut(s) 496, 618
PfeI GAWTC 2 cut(s) 137, 731
PkrI GCNGC 6 cut(s) 7, 10, 101, 315, 440, 992
PleI GAGTC 2 cut(s) 787, 936
PpsI GAGTC 2 cut(s) 787, 936
PpuMI RGGWCCY 1 cut(s) 265
Psp124BI GAGCTC 1 cut(s) 550
Psp1406I AACGTT 1 cut(s) 398
Psp5II RGGWCCY 1 cut(s) 265
PspN4I GGNNCC 5 cut(s) 75, 253, 266, 418, 506
PspPI GGNCC 4 cut(s) 251, 265, 416, 650
PspPPI RGGWCCY 1 cut(s) 265
PstI CTGCAG 1 cut(s) 101
PstNI CAGNNNCTG 1 cut(s) 990
RsaI GTAC 2 cut(s) 469, 1040
RsaNI GTAC 2 cut(s) 468, 1039
RseI CAYNNNNRTG 2 cut(s) 308, 1138
SacI GAGCTC 1 cut(s) 550
SacII CCGCGG 1 cut(s) 317
SaqAI TTAA 2 cut(s) 210, 1077
SatI GCNGC 6 cut(s) 6, 9, 100, 314, 439, 991
Sau3AI GATC 1 cut(s) 1130
Sau96I GGNCC 4 cut(s) 251, 265, 416, 650
SchI GAGTC 2 cut(s) 788, 937
ScrFI CCNGG 1 cut(s) 127
SduI GDGCHC 1 cut(s) 550
SfcI CTRYAG 3 cut(s) 49, 97, 1092
Sfr303I CCGCGG 1 cut(s) 317
SgrBI CCGCGG 1 cut(s) 317
SinI GGWCC 4 cut(s) 251, 265, 416, 650
SmiMI CAYNNNNRTG 2 cut(s) 308, 1138
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SseBI AGGCCT 1 cut(s) 334
SsiI CCGC 5 cut(s) 9, 44, 314, 316, 653
SspMI CTAG 3 cut(s) 330, 735, 942
SstI GAGCTC 1 cut(s) 550
StuI AGGCCT 1 cut(s) 334
StyD4I CCNGG 1 cut(s) 125
StyI CCWWGG 2 cut(s) 508, 849
TaaI ACNGT 4 cut(s) 310, 618, 677, 986
TaiI ACGT 1 cut(s) 401
TaqI TCGA 4 cut(s) 93, 117, 804, 1129
TauI GCSGC 2 cut(s) 11, 316
TfiI GAWTC 2 cut(s) 137, 731
Tru1I TTAA 2 cut(s) 210, 1077
Tru9I TTAA 2 cut(s) 210, 1077
TseI GCWGC 4 cut(s) 5, 99, 438, 990
TspDTI ATGAA 5 cut(s) 292, 459, 530, 858, 959
TspGWI ACGGA 1 cut(s) 396
VpaK11BI GGWCC 4 cut(s) 251, 265, 416, 650
XapI RAATTY 5 cut(s) 27, 185, 206, 592, 740
XceI RCATGY 1 cut(s) 1069
XmnI GAANNNNTTC 2 cut(s) 496, 618
XspI CTAG 3 cut(s) 330, 735, 942
Zsp2I ATGCAT 1 cut(s) 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.