RLG00000007809

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000298
Physical Location & Seq
Forward (+)
21365002 .. 21367065
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007809

Sequence Viewer

Length: 1272 bp
ATGCCTAGAGAAAAGATTGGAGATCCTCTGAATCCCAGGAAAAGAGGAAAATGGAAACCCAAAGGTGCTTTCAATATACAGGAACTTCCAGAAGCTTTAGTAATGGACATTCTCTCTAGGCTTTCCATCAAGGCCCTTTACAATTGTAGGTGCGTCTGCAGAGACTGGCTTCGCATAATTTGTGACCCTCAATTTGCTAATGTACAGTGTCTAAGATCACCCATCAGCATCTTGACCAGGACCAATCCCCGTGCAGAAGGAAAAAGGAAACTTGGATTAGTCCAGATAGAAAAATGTGCTGGCTCTCGTTTGCGAGTCGAAAGATTGAGGTTTGCTCCACAAAATAGCCTACCAGTTTCGACTGCTTCTGAGGTATGGCTGATAAATTCATGCAATGGATTAGTTTGTTTGGCTAAGGGTCCTCTTGGAAATGGCTTGTATGTATGCAATCCAATTTTGGGTGAGTACATCAGCATTCCTTCTCCTGATAAGAGTATGACCTGCTGGTTCATATTTGTTGGACTTGGTTTTAATGCCAGGACCAATGAGTACAAGGTCTTGCAAACATACTCCAATGGCCAGTCTGAGATATACACCATTGGTACAGGAGTTTGGAGAAGCATTGGAAAGGCTCCTAGTGGCAGTTTTTCCATGGTACCGTTCAATTCTTTTCTGCATGGAGCTCTTCATTGGGTTCCCATCTCTTTTGACGGTTCTCAGTTTATACAGTCTTTCAACTTTGAGACAGAACAATTTCAACCACTTCCCCCACCATTCAAAGGTCATTTGAACTTATCCCAACATTATAATCATCTAAAGTTGGGAGTATTAAAAGGTTGTCTCTTCTTCTGTGTGTTTGGTGCTTCTATAAGTGAATTTGACATGTGGGTTATGAAGGATTATGGTATCCAAGAGTCTTGGACAAAAATTCTTGTCATTGAAAACTTGTATCCATGGGTTCGCTATGGCCTGCATAATGCATATGAACCCATTGTGTTCTTCAATGATGGGGAAATCCTAATGACATACAAGGACCGGGTGGTGGTTCGTTATAATCACGAAACAGCGACTGTCTCACGAACTGGGATAATTCAAACTCAGTCTCGATTTCGTGCAATTGCATACTGCCCTTGCTTTGTTTCACTTCGTCATGTTTCAAATGGAGAGGAGGTGGTAAGGGTGAGAGACAATAACAAATTTGAAGAGCTTCAGGCTCTGGCCAACCTGCTTTGGGCAATGGTTCCAAATAAAGCAATAAGTTCCTTTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

424

Amino Acids

48.06

Weight (kDa)

9.18

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 26 - 65 7.3e-09 F-box-like
F-box PF00646 26 - 65 2e-08 F-box domain
b-prop_At3g26010-like PF24750 121 - 235 7.9e-06 F-box protein At3g26010-like, beta-propeller
FBA_3 PF08268 123 - 369 3.2e-18 F-box associated beta propeller domain
FBA_1 PF07734 124 - 369 5.2e-25 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 807, 1053
Acc36I ACCTGC 2 cut(s) 509, 1233
Acc65I GGTACC 1 cut(s) 655
AccB1I GGYRCC 1 cut(s) 655
AclWI GGATC 1 cut(s) 17
AcoI YGGCCR 2 cut(s) 577, 1218
AcsI RAATTY 4 cut(s) 385, 875, 927, 1196
AcuI CTGAAG 1 cut(s) 1193
AfaI GTAC 5 cut(s) 204, 467, 551, 604, 657
AfiI CCNNNNNNNGG 4 cut(s) 458, 779, 1042, 1231
AflIII ACRYGT 1 cut(s) 882
AjnI CCWGG 3 cut(s) 35, 236, 536
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 4 cut(s) 95, 683, 1207, 1269
AluI AGCT 4 cut(s) 95, 683, 1207, 1269
Alw21I GWGCWC 1 cut(s) 685
Alw26I GTCTC 6 cut(s) 156, 737, 845, 1078, 1107, 1179
AlwI GGATC 1 cut(s) 17
AlwNI CAGNNNCTG 3 cut(s) 165, 1070, 1216
AoxI GGCC 4 cut(s) 132, 577, 967, 1218
ApoI RAATTY 4 cut(s) 385, 875, 927, 1196
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
Asp700I GAANNNNTTC 2 cut(s) 753, 1206
Asp718I GGTACC 1 cut(s) 655
AspS9I GGNCC 5 cut(s) 133, 240, 419, 540, 1033
AsuC2I CCSGG 1 cut(s) 1037
AsuHPI GGTGA 3 cut(s) 210, 473, 1192
AvaII GGWCC 4 cut(s) 240, 419, 540, 1033
BaeI ACNNNNGTAYC 2 cut(s) 594, 627
BalI TGGCCA 2 cut(s) 579, 1220
BanI GGYRCC 1 cut(s) 655
BanII GRGCYC 1 cut(s) 685
Bbv12I GWGCWC 1 cut(s) 685
BccI CCATC 4 cut(s) 134, 230, 707, 1001
BciT130I CCWGG 3 cut(s) 37, 238, 538
BciVI GTATCC 2 cut(s) 917, 960
BcnI CCSGG 1 cut(s) 1037
BcoDI GTCTC 6 cut(s) 156, 737, 845, 1078, 1107, 1179
BfaI CTAG 3 cut(s) 6, 117, 636
BfmI CTRYAG 1 cut(s) 157
BfuAI ACCTGC 2 cut(s) 509, 1233
BfuI GTATCC 2 cut(s) 917, 960
Bme1390I CCNGG 4 cut(s) 37, 238, 538, 1037
Bme18I GGWCC 4 cut(s) 240, 419, 540, 1033
BmgT120I GGNCC 5 cut(s) 133, 240, 419, 540, 1033
BmiI GGNNCC 5 cut(s) 420, 633, 657, 696, 1242
BmrFI CCNGG 4 cut(s) 37, 238, 538, 1037
BmrI ACTGGG 1 cut(s) 1092
BmsI GCATC 1 cut(s) 237
BmuI ACTGGG 1 cut(s) 1092
BplI GAGNNNNNCTC 2 cut(s) 319, 351
Bpu10I CCTNAGC 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 1037
BsaJI CCNNGG 3 cut(s) 35, 651, 953
BsaXI ACNNNNNCTCC 2 cut(s) 1155, 1185
Bsc4I CCNNNNNNNGG 4 cut(s) 458, 779, 1042, 1231
Bse1I ACTGG 4 cut(s) 170, 353, 580, 1087
Bse3DI GCAATG 2 cut(s) 400, 1242
BseBI CCWGG 3 cut(s) 37, 238, 538
BseDI CCNNGG 3 cut(s) 35, 651, 953
BseLI CCNNNNNNNGG 4 cut(s) 458, 779, 1042, 1231
BseMI GCAATG 2 cut(s) 400, 1242
BseMII CTCAG 4 cut(s) 360, 576, 731, 1112
BseNI ACTGG 4 cut(s) 170, 353, 580, 1087
BseRI GAGGAG 1 cut(s) 1181
BsgI GTGCAG 1 cut(s) 273
BshFI GGCC 4 cut(s) 134, 579, 969, 1220
BshNI GGYRCC 1 cut(s) 655
BsiHKAI GWGCWC 1 cut(s) 685
BsiSI CCGG 1 cut(s) 1036
BslI CCNNNNNNNGG 4 cut(s) 458, 779, 1042, 1231
BsmAI GTCTC 6 cut(s) 156, 737, 845, 1078, 1107, 1179
BsmI GAATGC 1 cut(s) 474
BsnI GGCC 4 cut(s) 134, 579, 969, 1220
Bsp1286I GDGCHC 1 cut(s) 685
Bsp1407I TGTACA 1 cut(s) 202
Bsp143I GATC 2 cut(s) 22, 215
Bsp19I CCATGG 2 cut(s) 651, 953
BspANI GGCC 4 cut(s) 134, 579, 969, 1220
BspCNI CTCAG 4 cut(s) 361, 577, 730, 1111
BspLI GGNNCC 5 cut(s) 420, 633, 657, 696, 1242
BspMAI CTGCAG 1 cut(s) 161
BspMI ACCTGC 2 cut(s) 509, 1233
BspPI GGATC 1 cut(s) 17
BspQI GCTCTTC 2 cut(s) 690, 1197
BspT107I GGYRCC 1 cut(s) 655
BsrDI GCAATG 2 cut(s) 400, 1242
BsrGI TGTACA 1 cut(s) 202
BsrI ACTGG 4 cut(s) 170, 353, 580, 1087
BssECI CCNNGG 3 cut(s) 35, 651, 953
BssMI GATC 2 cut(s) 22, 215
BssT1I CCWWGG 2 cut(s) 651, 953
Bst2UI CCWGG 3 cut(s) 37, 238, 538
Bst4CI ACNGT 5 cut(s) 207, 660, 713, 729, 1072
Bst6I CTCTTC 3 cut(s) 690, 848, 1197
BstAUI TGTACA 1 cut(s) 202
BstC8I GCNNGC 2 cut(s) 301, 971
BstDEI CTNAG 6 cut(s) 212, 369, 414, 585, 717, 1098
BstDSI CCRYGG 2 cut(s) 651, 953
BstKTI GATC 2 cut(s) 25, 218
BstMAI GTCTC 6 cut(s) 156, 737, 845, 1078, 1107, 1179
BstMBI GATC 2 cut(s) 22, 215
BstNI CCWGG 3 cut(s) 37, 238, 538
BstNSI RCATGY 1 cut(s) 886
BstSCI CCNGG 4 cut(s) 35, 236, 536, 1035
BstSFI CTRYAG 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BsuI GTATCC 2 cut(s) 917, 960
BsuRI GGCC 4 cut(s) 134, 579, 969, 1220
BtgI CCRYGG 2 cut(s) 651, 953
BtsIMutI CAGTG 1 cut(s) 212
BveI ACCTGC 2 cut(s) 509, 1233
Cac8I GCNNGC 2 cut(s) 301, 971
CaiI CAGNNNCTG 3 cut(s) 165, 1070, 1216
Cfr13I GGNCC 5 cut(s) 133, 240, 419, 540, 1033
CseI GACGC 1 cut(s) 142
Csp6I GTAC 5 cut(s) 203, 466, 550, 603, 656
CviAII CATG 6 cut(s) 390, 652, 677, 883, 954, 1151
CviQI GTAC 5 cut(s) 203, 466, 550, 603, 656
DdeI CTNAG 6 cut(s) 212, 369, 414, 585, 717, 1098
DpnI GATC 2 cut(s) 24, 217
DpnII GATC 2 cut(s) 22, 215
EaeI YGGCCR 2 cut(s) 577, 1218
Eam1104I CTCTTC 3 cut(s) 690, 848, 1197
EarI CTCTTC 3 cut(s) 690, 848, 1197
Ecl136II GAGCTC 1 cut(s) 683
Eco130I CCWWGG 2 cut(s) 651, 953
Eco24I GRGCYC 1 cut(s) 685
Eco47I GGWCC 4 cut(s) 240, 419, 540, 1033
Eco53kI GAGCTC 1 cut(s) 683
Eco57I CTGAAG 1 cut(s) 1193
EcoICRI GAGCTC 1 cut(s) 683
EcoO109I RGGNCCY 2 cut(s) 133, 419
EcoRII CCWGG 3 cut(s) 35, 236, 536
EcoT14I CCWWGG 2 cut(s) 651, 953
EcoT22I ATGCAT 1 cut(s) 982
EcoT38I GRGCYC 1 cut(s) 685
ErhI CCWWGG 2 cut(s) 651, 953
FaeI CATG 6 cut(s) 393, 655, 680, 886, 957, 1154
FatI CATG 6 cut(s) 389, 651, 676, 882, 953, 1150
FauNDI CATATG 1 cut(s) 982
FriOI GRGCYC 1 cut(s) 685
FspBI CTAG 3 cut(s) 6, 117, 636
HaeIII GGCC 4 cut(s) 134, 579, 969, 1220
HapII CCGG 1 cut(s) 1036
HgaI GACGC 1 cut(s) 142
Hin1II CATG 6 cut(s) 393, 655, 680, 886, 957, 1154
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 3 cut(s) 31, 315, 914
HpaII CCGG 1 cut(s) 1036
HphI GGTGA 3 cut(s) 210, 473, 1192
Hpy188I TCNGA 3 cut(s) 30, 370, 586
Hpy188III TCNNGA 7 cut(s) 89, 232, 283, 485, 1058, 1077, 1104
HpyAV CCTTC 3 cut(s) 251, 489, 889
HpyCH4III ACNGT 5 cut(s) 207, 660, 713, 729, 1072
HpyF3I CTNAG 6 cut(s) 212, 369, 414, 585, 717, 1098
Hsp92II CATG 6 cut(s) 393, 655, 680, 886, 957, 1154
KpnI GGTACC 1 cut(s) 659
Kzo9I GATC 2 cut(s) 22, 215
LguI GCTCTTC 2 cut(s) 690, 1197
LmnI GCTCC 3 cut(s) 340, 637, 680
LweI GCATC 1 cut(s) 237
MaeI CTAG 3 cut(s) 6, 117, 636
MaeIII GTNAC 1 cut(s) 182
MalI GATC 2 cut(s) 24, 217
MboI GATC 2 cut(s) 22, 215
MboII GAAGA 5 cut(s) 677, 835, 838, 991, 1214
MfeI CAATTG 2 cut(s) 142, 1116
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 685
MlsI TGGCCA 2 cut(s) 579, 1220
MluNI TGGCCA 2 cut(s) 579, 1220
MlyI GAGTC 2 cut(s) 324, 923
MmeI TCCRAC 1 cut(s) 499
MnlI CCTC 8 cut(s) 36, 38, 198, 321, 364, 432, 1159, 1162
Mox20I TGGCCA 2 cut(s) 579, 1220
Mph1103I ATGCAT 1 cut(s) 982
MroXI GAANNNNTTC 2 cut(s) 753, 1206
MscI TGGCCA 2 cut(s) 579, 1220
MseI TTAA 2 cut(s) 531, 830
Msp20I TGGCCA 2 cut(s) 579, 1220
MspI CCGG 1 cut(s) 1036
MspR9I CCNGG 4 cut(s) 37, 238, 538, 1037
MunI CAATTG 2 cut(s) 142, 1116
Mva1269I GAATGC 1 cut(s) 474
MvaI CCWGG 3 cut(s) 37, 238, 538
NciI CCSGG 1 cut(s) 1037
NcoI CCATGG 2 cut(s) 651, 953
NdeI CATATG 1 cut(s) 982
NdeII GATC 2 cut(s) 22, 215
NlaIII CATG 6 cut(s) 393, 655, 680, 886, 957, 1154
NlaIV GGNNCC 5 cut(s) 420, 633, 657, 696, 1242
NmuCI GTSAC 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 982
NspI RCATGY 1 cut(s) 886
PciI ACATGT 1 cut(s) 882
PciSI GCTCTTC 2 cut(s) 690, 1197
PctI GAATGC 1 cut(s) 474
PdmI GAANNNNTTC 2 cut(s) 753, 1206
PfeI GAWTC 1 cut(s) 31
PleI GAGTC 2 cut(s) 323, 922
PpsI GAGTC 2 cut(s) 323, 922
PpuMI RGGWCCY 1 cut(s) 419
PscI ACATGT 1 cut(s) 882
PsiI TTATAA 2 cut(s) 807, 1053
Psp124BI GAGCTC 1 cut(s) 685
Psp5II RGGWCCY 1 cut(s) 419
Psp6I CCWGG 3 cut(s) 35, 236, 536
PspGI CCWGG 3 cut(s) 35, 236, 536
PspN4I GGNNCC 5 cut(s) 420, 633, 657, 696, 1242
PspPI GGNCC 5 cut(s) 133, 240, 419, 540, 1033
PspPPI RGGWCCY 1 cut(s) 419
PstI CTGCAG 1 cut(s) 161
PstNI CAGNNNCTG 3 cut(s) 165, 1070, 1216
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 5 cut(s) 204, 467, 551, 604, 657
RsaNI GTAC 5 cut(s) 203, 466, 550, 603, 656
SacI GAGCTC 1 cut(s) 685
SapI GCTCTTC 2 cut(s) 690, 1197
SaqAI TTAA 2 cut(s) 531, 830
Sau3AI GATC 2 cut(s) 22, 215
Sau96I GGNCC 5 cut(s) 133, 240, 419, 540, 1033
SchI GAGTC 2 cut(s) 324, 923
ScrFI CCNGG 4 cut(s) 37, 238, 538, 1037
SduI GDGCHC 1 cut(s) 685
SfaNI GCATC 1 cut(s) 237
SfcI CTRYAG 1 cut(s) 157
SinI GGWCC 4 cut(s) 240, 419, 540, 1033
SspMI CTAG 3 cut(s) 6, 117, 636
SstI GAGCTC 1 cut(s) 685
StyD4I CCNGG 4 cut(s) 35, 236, 536, 1035
StyI CCWWGG 2 cut(s) 651, 953
TaaI ACNGT 5 cut(s) 207, 660, 713, 729, 1072
TaqI TCGA 3 cut(s) 318, 359, 1105
TatI WGTACW 3 cut(s) 202, 465, 549
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 2 cut(s) 531, 830
Tru9I TTAA 2 cut(s) 531, 830
TscAI CASTG 1 cut(s) 212
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 5 cut(s) 378, 499, 677, 908, 999
TspRI CASTG 1 cut(s) 212
VpaK11BI GGWCC 4 cut(s) 240, 419, 540, 1033
XapI RAATTY 4 cut(s) 385, 875, 927, 1196
XceI RCATGY 1 cut(s) 886
XmnI GAANNNNTTC 2 cut(s) 753, 1206
XspI CTAG 3 cut(s) 6, 117, 636
Zsp2I ATGCAT 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.