pycom13g15390

peptide-methionine (R)-S-oxide reductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000298
Physical Location & Seq
Reverse (-)
11218843 .. 11219932
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g15390.1

Sequence Viewer

Length: 930 bp
ATGGAAATTTTCTCAAGGCTTAACTTCAAGACCCTCTCCAACTGCAGGTTCGTTTGCAAACCCTGGCTTTCACTAATTACCGACCCGCTATGCTCCCATCTCTGCCTCTGGAGATCGCCCACTCCCGGCATCTTGATCAAGACCACACCCCCTAAAACCAAATCAAGGAAACTGGATTATACCTGTATAGACGAACTCGCCGATTCTCATTGGGGGATCGAGAAAATGAGGTTTACCCTGAAAAATAGCCTGCCCATTTCCGATTTTAAGGCAGTCTGGAATTTTGTTGGACTTGGTTTTAGTGCGGCGACGAATGAGTACAAGTTGCTGCAAACATTTTATCCTGAGTGTGAATCGTCCTCACCTGACAACTTATATGAGACTGAGATATCCACCATTGGTACGGGAGTTTGGAGAAGCATTGAGAATGCACCTTGGGACTATGTTTGCTTATCATTCAATGTGCTTCTGCACGGAGCTCTTCACTGGGTTTCCGAGAGTACTAGGTATTCAGAGTTTATACGATCTTTCAGCTTTGAAAGAGAGCAGTTCAAATACTACCTGCACCTAGCTTTGGGAGTGGTGGGAGATTGTCTCTTATATGCGTGTAGACAATTTGACATGTGGGTTATGAAAGAGTATGGTGTCCACGACTCCTGGACTAAAACTCTTGTGGTCGAAAACTTGTATCTGAGGGAACGCAGCCGTGACCTGTATGAACCACTGATATTTTTAAGCAATGGGGAAATCCTGATGTCCTACAATGATTGGATTGTGGTTTGTTACGATCCAAATAGAAAGAATCTGAGGGAAACTAGAATTGCTCGAACTCAATCAGATTTTCGTGCATATGCTTACAGTCCAAGCTTTGTTTCTCTGTATTTTGCTTCAAAAGGAGAGGAGGTGAAAAGGTACTGTAATCGTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

310

Amino Acids

36.24

Weight (kDa)

7.5

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 29 6e-06 F-box domain
FBA_1 PF07734 92 - 267 2.7e-13 F-box associated beta propeller domain
FBA_3 PF08268 95 - 280 5e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 36, 570
AccI GTMKAC 1 cut(s) 610
AciI CCGC 2 cut(s) 86, 305
AclWI GGATC 2 cut(s) 224, 782
AcsI RAATTY 2 cut(s) 6, 280
AfaI GTAC 4 cut(s) 320, 403, 502, 914
AfiI CCNNNNNNNGG 4 cut(s) 45, 125, 165, 574
AflIII ACRYGT 1 cut(s) 621
AgsI TTSAA 5 cut(s) 28, 460, 539, 553, 891
AjnI CCWGG 2 cut(s) 62, 656
AjuI GAANNNNNNNTTGG 4 cut(s) 32, 64, 856, 888
AluBI AGCT 4 cut(s) 479, 534, 572, 867
AluI AGCT 4 cut(s) 479, 534, 572, 867
Alw21I GWGCWC 1 cut(s) 481
Alw26I GTCTC 2 cut(s) 374, 599
AlwI GGATC 2 cut(s) 224, 782
ApeKI GCWGC 2 cut(s) 328, 702
ApoI RAATTY 2 cut(s) 6, 280
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 354, 916
BaeI ACNNNNGTAYC 2 cut(s) 393, 426
BanII GRGCYC 1 cut(s) 481
Bbv12I GWGCWC 1 cut(s) 481
BbvI GCAGC 2 cut(s) 315, 714
BccI CCATC 1 cut(s) 105
BceAI ACGGC 1 cut(s) 690
BciT130I CCWGG 2 cut(s) 64, 658
BclI TGATCA 1 cut(s) 135
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 2 cut(s) 374, 599
BfaI CTAG 3 cut(s) 504, 569, 816
BfmI CTRYAG 1 cut(s) 43
BfuAI ACCTGC 2 cut(s) 36, 570
BisI GCNGC 3 cut(s) 306, 329, 703
BlsI GCNGC 3 cut(s) 307, 330, 704
BmcAI AGTACT 1 cut(s) 502
Bme1390I CCNGG 3 cut(s) 64, 126, 658
BmrFI CCNGG 3 cut(s) 64, 126, 658
BmrI ACTGGG 1 cut(s) 496
BmsI GCATC 1 cut(s) 138
BmuI ACTGGG 1 cut(s) 496
BplI GAGNNNNNCTC 2 cut(s) 579, 611
BpmI CTGGAG 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 62, 434
BsaXI ACNNNNNCTCC 2 cut(s) 888, 918
Bsc4I CCNNNNNNNGG 4 cut(s) 45, 125, 165, 574
Bse1I ACTGG 2 cut(s) 177, 491
Bse3DI GCAATG 1 cut(s) 745
BseBI CCWGG 2 cut(s) 64, 658
BseDI CCNNGG 2 cut(s) 62, 434
BseLI CCNNNNNNNGG 4 cut(s) 45, 125, 165, 574
BseMI GCAATG 1 cut(s) 745
BseMII CTCAG 4 cut(s) 336, 375, 683, 797
BseNI ACTGG 2 cut(s) 177, 491
BseRI GAGGAG 1 cut(s) 914
BseXI GCAGC 2 cut(s) 315, 714
BsgI GTGCAG 2 cut(s) 455, 548
BsiHKAI GWGCWC 1 cut(s) 481
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 4 cut(s) 45, 125, 165, 574
BsmAI GTCTC 2 cut(s) 374, 599
BsmFI GGGAC 1 cut(s) 452
BsmI GAATGC 1 cut(s) 433
Bsp1286I GDGCHC 1 cut(s) 481
Bsp143I GATC 5 cut(s) 113, 135, 216, 524, 787
BspACI CCGC 2 cut(s) 86, 305
BspCNI CTCAG 4 cut(s) 337, 376, 684, 798
BspMAI CTGCAG 1 cut(s) 47
BspMI ACCTGC 2 cut(s) 36, 570
BspPI GGATC 2 cut(s) 224, 782
BspQI GCTCTTC 1 cut(s) 486
BsrDI GCAATG 1 cut(s) 745
BsrI ACTGG 2 cut(s) 177, 491
BssECI CCNNGG 2 cut(s) 62, 434
BssMI GATC 5 cut(s) 113, 135, 216, 524, 787
BssT1I CCWWGG 1 cut(s) 434
Bst2UI CCWGG 2 cut(s) 64, 658
Bst4CI ACNGT 2 cut(s) 860, 917
Bst6I CTCTTC 1 cut(s) 486
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 4 cut(s) 345, 384, 692, 806
BstKTI GATC 5 cut(s) 116, 138, 219, 527, 790
BstMAI GTCTC 2 cut(s) 374, 599
BstMBI GATC 5 cut(s) 113, 135, 216, 524, 787
BstNI CCWGG 2 cut(s) 64, 658
BstNSI RCATGY 1 cut(s) 625
BstSCI CCNGG 3 cut(s) 62, 124, 656
BstSFI CTRYAG 1 cut(s) 43
BstV1I GCAGC 2 cut(s) 315, 714
BtsIMutI CAGTG 2 cut(s) 484, 722
BveI ACCTGC 2 cut(s) 36, 570
Cac8I GCNNGC 1 cut(s) 251
Csp6I GTAC 4 cut(s) 319, 402, 501, 913
CviAII CATG 1 cut(s) 622
CviJI RGCY 8 cut(s) 19, 67, 249, 479, 534, 572, 705, 867
CviKI_1 RGCY 8 cut(s) 19, 67, 249, 479, 534, 572, 705, 867
CviQI GTAC 4 cut(s) 319, 402, 501, 913
DdeI CTNAG 4 cut(s) 345, 384, 692, 806
DpnI GATC 5 cut(s) 115, 137, 218, 526, 789
DpnII GATC 5 cut(s) 113, 135, 216, 524, 787
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Ecl136II GAGCTC 1 cut(s) 479
Eco130I CCWWGG 1 cut(s) 434
Eco24I GRGCYC 1 cut(s) 481
Eco32I GATATC 1 cut(s) 390
Eco53kI GAGCTC 1 cut(s) 479
EcoICRI GAGCTC 1 cut(s) 479
EcoRII CCWGG 2 cut(s) 62, 656
EcoRV GATATC 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 434
EcoT38I GRGCYC 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 434
FaeI CATG 1 cut(s) 625
FaqI GGGAC 1 cut(s) 452
FatI CATG 1 cut(s) 621
FauI CCCGC 1 cut(s) 93
FauNDI CATATG 1 cut(s) 850
FbaI TGATCA 1 cut(s) 135
FblI GTMKAC 1 cut(s) 610
Fnu4HI GCNGC 3 cut(s) 306, 329, 703
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 3 cut(s) 306, 329, 703
FspBI CTAG 3 cut(s) 504, 569, 816
GluI GCNGC 3 cut(s) 306, 329, 703
GsuI CTGGAG 1 cut(s) 130
HapII CCGG 1 cut(s) 126
Hin1II CATG 1 cut(s) 625
HindIII AAGCTT 1 cut(s) 865
HinfI GANTC 4 cut(s) 203, 353, 653, 802
HpaII CCGG 1 cut(s) 126
HphI GGTGA 2 cut(s) 354, 916
Hpy166II GTNNAC 3 cut(s) 234, 611, 649
Hpy188I TCNGA 6 cut(s) 262, 496, 514, 693, 807, 838
Hpy188III TCNNGA 8 cut(s) 28, 109, 133, 139, 220, 277, 344, 751
Hpy8I GTNNAC 3 cut(s) 234, 611, 649
Hpy99I CGWCG 1 cut(s) 313
HpyCH4III ACNGT 2 cut(s) 860, 917
HpyCH4V TGCA 7 cut(s) 45, 57, 331, 431, 472, 565, 848
HpyF3I CTNAG 4 cut(s) 345, 384, 692, 806
Hsp92II CATG 1 cut(s) 625
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 5 cut(s) 113, 135, 216, 524, 787
LguI GCTCTTC 1 cut(s) 486
LmnI GCTCC 2 cut(s) 98, 476
Lsp1109I GCAGC 2 cut(s) 315, 714
LweI GCATC 1 cut(s) 138
MaeI CTAG 3 cut(s) 504, 569, 816
MaeIII GTNAC 2 cut(s) 707, 782
MalI GATC 5 cut(s) 115, 137, 218, 526, 789
MboI GATC 5 cut(s) 113, 135, 216, 524, 787
MboII GAAGA 1 cut(s) 473
MhlI GDGCHC 1 cut(s) 481
MluCI AATT 5 cut(s) 6, 75, 280, 614, 819
MlyI GAGTC 1 cut(s) 647
MmeI TCCRAC 2 cut(s) 63, 268
MnlI CCTC 8 cut(s) 44, 116, 222, 370, 687, 801, 892, 895
MseI TTAA 3 cut(s) 21, 267, 734
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 3 cut(s) 64, 126, 658
Mva1269I GAATGC 1 cut(s) 433
MvaI CCWGG 2 cut(s) 64, 658
NciI CCSGG 1 cut(s) 126
NdeI CATATG 1 cut(s) 850
NdeII GATC 5 cut(s) 113, 135, 216, 524, 787
NlaIII CATG 1 cut(s) 625
NmuCI GTSAC 1 cut(s) 707
NspI RCATGY 1 cut(s) 625
PciI ACATGT 1 cut(s) 621
PciSI GCTCTTC 1 cut(s) 486
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 1 cut(s) 433
PfeI GAWTC 3 cut(s) 203, 353, 802
PfoI TCCNGGA 1 cut(s) 656
PkrI GCNGC 3 cut(s) 307, 330, 704
PleI GAGTC 1 cut(s) 647
PpsI GAGTC 1 cut(s) 647
PscI ACATGT 1 cut(s) 621
Psp124BI GAGCTC 1 cut(s) 481
Psp6I CCWGG 2 cut(s) 62, 656
PspGI CCWGG 2 cut(s) 62, 656
PstI CTGCAG 1 cut(s) 47
RsaI GTAC 4 cut(s) 320, 403, 502, 914
RsaNI GTAC 4 cut(s) 319, 402, 501, 913
SacI GAGCTC 1 cut(s) 481
SapI GCTCTTC 1 cut(s) 486
SaqAI TTAA 3 cut(s) 21, 267, 734
SatI GCNGC 3 cut(s) 306, 329, 703
Sau3AI GATC 5 cut(s) 113, 135, 216, 524, 787
ScaI AGTACT 1 cut(s) 502
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 3 cut(s) 64, 126, 658
SduI GDGCHC 1 cut(s) 481
SfaNI GCATC 1 cut(s) 138
SfcI CTRYAG 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 5 cut(s) 6, 75, 280, 614, 819
SsiI CCGC 2 cut(s) 86, 305
SspMI CTAG 3 cut(s) 504, 569, 816
SstI GAGCTC 1 cut(s) 481
StyD4I CCNGG 3 cut(s) 62, 124, 656
StyI CCWWGG 1 cut(s) 434
TaaI ACNGT 2 cut(s) 860, 917
TaqI TCGA 3 cut(s) 219, 678, 826
TasI AATT 5 cut(s) 6, 75, 280, 614, 819
TatI WGTACW 2 cut(s) 318, 500
TauI GCSGC 1 cut(s) 308
TfiI GAWTC 3 cut(s) 203, 353, 802
Tru1I TTAA 3 cut(s) 21, 267, 734
Tru9I TTAA 3 cut(s) 21, 267, 734
TscAI CASTG 2 cut(s) 491, 729
TseFI GTSAC 1 cut(s) 707
TseI GCWGC 2 cut(s) 328, 702
Tsp45I GTSAC 1 cut(s) 707
TspDTI ATGAA 2 cut(s) 647, 732
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 2 cut(s) 491, 729
XapI RAATTY 2 cut(s) 6, 280
XceI RCATGY 1 cut(s) 625
XmiI GTMKAC 1 cut(s) 610
XspI CTAG 3 cut(s) 504, 569, 816
ZrmI AGTACT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.