Rh6DG492000

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000298
Physical Location & Seq
Reverse (-)
65186645 .. 65187559
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG492000.1

Sequence Viewer

Length: 255 bp
ATGTTCTCGAGTAATGGGGAAATCCTGATGATGTGTGATAACCAGCTTGTGGTCTCTTACAATCAAGATACAAAGACTTTCAAAGAAACTGAAATTATTCAGACTCGACGCCATTTATTCGATGCAGTTACATACAGTCCCTGTTTTGTTTCGCTCCATGATCTTGCACAAGGAGAGAATAATGTGAAAAGGGTATTCAAAGGGGTATATAAGAAATCTGACAGCTTCTTTGGTGAAGATTACTCTTGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

84

Amino Acids

9.78

Weight (kDa)

5.54

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 49
AcoI YGGCCR 1 cut(s) 248
AcyI GRCGYC 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 2 cut(s) 82, 199
AluBI AGCT 2 cut(s) 46, 225
AluI AGCT 2 cut(s) 46, 225
Alw26I GTCTC 1 cut(s) 58
AlwNI CAGNNNCTG 1 cut(s) 141
Ama87I CYCGRG 1 cut(s) 7
AoxI GGCC 1 cut(s) 248
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
Asp700I GAANNNNTTC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 7
BalI TGGCCA 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 58
BmeT110I CYCGRG 1 cut(s) 7
BmsI GCATC 1 cut(s) 112
BsaHI GRCGYC 1 cut(s) 109
BsaI GGTCTC 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 49
BshFI GGCC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 7
BslFI GGGAC 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 123
BsnI GGCC 1 cut(s) 250
Bso31I GGTCTC 1 cut(s) 58
BsoBI CYCGRG 1 cut(s) 7
Bsp143I GATC 1 cut(s) 160
BspANI GGCC 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 58
BssMI GATC 1 cut(s) 160
BssNI GRCGYC 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 109
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 1 cut(s) 160
BsuRI GGCC 1 cut(s) 250
CaiI CAGNNNCTG 1 cut(s) 141
CseI GACGC 1 cut(s) 117
CviAII CATG 2 cut(s) 158, 252
CviJI RGCY 3 cut(s) 46, 225, 250
CviKI_1 RGCY 3 cut(s) 46, 225, 250
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 58
Eco88I CYCGRG 1 cut(s) 7
FaeI CATG 2 cut(s) 161, 255
FaiI YATR 5 cut(s) 133, 159, 208, 210, 253
FaqI GGGAC 1 cut(s) 123
FatI CATG 2 cut(s) 157, 251
HaeIII GGCC 1 cut(s) 250
HgaI GACGC 1 cut(s) 117
Hin1I GRCGYC 1 cut(s) 109
Hin1II CATG 2 cut(s) 161, 255
HinfI GANTC 1 cut(s) 103
HphI GGTGA 1 cut(s) 245
Hpy188I TCNGA 2 cut(s) 102, 220
Hpy188III TCNNGA 3 cut(s) 7, 25, 65
Hpy99I CGWCG 1 cut(s) 111
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 125, 167
Hsp92I GRCGYC 1 cut(s) 109
Hsp92II CATG 2 cut(s) 161, 255
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 3 cut(s) 38, 56, 154
LweI GCATC 1 cut(s) 112
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 1 cut(s) 248
MlsI TGGCCA 1 cut(s) 250
MluCI AATT 1 cut(s) 93
MluNI TGGCCA 1 cut(s) 250
MlyI GAGTC 1 cut(s) 97
Mox20I TGGCCA 1 cut(s) 250
MroXI GAANNNNTTC 1 cut(s) 96
MscI TGGCCA 1 cut(s) 250
Msp20I TGGCCA 1 cut(s) 250
NdeII GATC 1 cut(s) 160
NlaIII CATG 2 cut(s) 161, 255
PaeR7I CTCGAG 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 96
PflMI CCANNNNNTGG 1 cut(s) 49
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 141
Sau3AI GATC 1 cut(s) 160
SchI GAGTC 1 cut(s) 97
SetI ASST 2 cut(s) 48, 227
SfaNI GCATC 1 cut(s) 112
Sfr274I CTCGAG 1 cut(s) 7
SlaI CTCGAG 1 cut(s) 7
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 1 cut(s) 93
TaaI ACNGT 1 cut(s) 137
TaqI TCGA 3 cut(s) 8, 106, 120
TasI AATT 1 cut(s) 93
Van91I CCANNNNNTGG 1 cut(s) 49
XhoI CTCGAG 1 cut(s) 7
XmnI GAANNNNTTC 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.