Rorug04G0158800

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000298
Physical Location & Seq
Forward (+)
27737184 .. 27738488
1305 bp
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UTR
Exon/CDS
Intron
Rorug04G0158800.1

Sequence Viewer

Length: 336 bp
ATGAAGTACCTCATCGTCATCATGCTAGTAATGCTAGTAACTGTTGGCAATCTTTGGGGTTTTGATGGGGCTGGGGAGTGTGGAAGCAACCCGGAGGTTGTGGTATACAAGCTTGCTCCATGTGGACCAGCAGCACAAGATCAGAGCGTCACGGTTTCTCCCAAGTGTTGCTCGTTGATGAAACGCGTCGACAAGCGTTGTCTTTGTGCCATTGTGCTCTCTAAAGAAGTTCAGAGTCATGGCCTCAAGCCAGCAATCGCAGTCACCATACCTAAACGTTGTAATGATCCCAGACGTCCCAAGGGTTACAAGTGCGGAGCTTATACTGTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

111

Amino Acids

11.98

Weight (kDa)

9.22

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 25 - 101 1.2e-08 Probable lipid transfer
Tryp_alpha_amyl PF00234 34 - 105 3.3e-08 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 298
AccI GTMKAC 2 cut(s) 105, 189
AccII CGCG 1 cut(s) 186
AciI CCGC 1 cut(s) 315
AclI AACGTT 1 cut(s) 277
AclWI GGATC 1 cut(s) 281
AcyI GRCGYC 1 cut(s) 295
AfaI GTAC 1 cut(s) 8
AflIII ACRYGT 1 cut(s) 184
AluBI AGCT 2 cut(s) 112, 320
AluI AGCT 2 cut(s) 112, 320
Alw21I GWGCWC 1 cut(s) 219
AlwI GGATC 1 cut(s) 281
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 256
AvaII GGWCC 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 59
BcnI CCSGG 1 cut(s) 92
BfaI CTAG 2 cut(s) 26, 35
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 300
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
BseDI CCNNGG 1 cut(s) 300
BseXI GCAGC 1 cut(s) 143
BseYI CCCAGC 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 2 cut(s) 139, 286
BspACI CCGC 1 cut(s) 315
BspANI GGCC 1 cut(s) 243
BspFNI CGCG 1 cut(s) 186
BspPI GGATC 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 2 cut(s) 139, 286
BssNAI GTATAC 1 cut(s) 106
BssNI GRCGYC 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 300
Bst1107I GTATAC 1 cut(s) 106
Bst4CI ACNGT 3 cut(s) 43, 154, 328
BstACI GRCGYC 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 114, 252
BstFNI CGCG 1 cut(s) 186
BstKTI GATC 2 cut(s) 142, 289
BstMBI GATC 2 cut(s) 139, 286
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 90
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 143
BstZ17I GTATAC 1 cut(s) 106
BsuRI GGCC 1 cut(s) 243
Cac8I GCNNGC 2 cut(s) 114, 252
Cfr13I GGNCC 1 cut(s) 125
CseI GACGC 2 cut(s) 136, 175
Csp6I GTAC 1 cut(s) 7
CviAII CATG 3 cut(s) 22, 120, 239
CviJI RGCY 5 cut(s) 71, 112, 243, 250, 320
CviKI_1 RGCY 5 cut(s) 71, 112, 243, 250, 320
CviQI GTAC 1 cut(s) 7
DpnI GATC 2 cut(s) 141, 288
DpnII GATC 2 cut(s) 139, 286
Eco130I CCWWGG 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 3 cut(s) 25, 123, 242
FaiI YATR 6 cut(s) 23, 106, 121, 240, 269, 324
FaqI GGGAC 1 cut(s) 282
FatI CATG 3 cut(s) 21, 119, 238
FblI GTMKAC 2 cut(s) 105, 189
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 2 cut(s) 26, 35
GluI GCNGC 1 cut(s) 132
GsaI CCCAGC 1 cut(s) 75
HaeIII GGCC 1 cut(s) 243
HapII CCGG 1 cut(s) 92
HgaI GACGC 2 cut(s) 136, 175
Hin1I GRCGYC 1 cut(s) 295
Hin1II CATG 3 cut(s) 25, 123, 242
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 1 cut(s) 235
HpaII CCGG 1 cut(s) 92
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 3 cut(s) 106, 125, 190
Hpy188I TCNGA 2 cut(s) 144, 234
Hpy8I GTNNAC 3 cut(s) 106, 125, 190
Hpy99I CGWCG 1 cut(s) 191
HpyCH4III ACNGT 3 cut(s) 43, 154, 328
HpyCH4IV ACGT 2 cut(s) 277, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpySE526I ACGT 2 cut(s) 277, 295
Hsp92I GRCGYC 1 cut(s) 295
Hsp92II CATG 3 cut(s) 25, 123, 242
Kzo9I GATC 2 cut(s) 139, 286
LmnI GCTCC 2 cut(s) 121, 317
LpnPI CCDG 5 cut(s) 57, 105, 141, 264, 304
Lsp1109I GCAGC 1 cut(s) 143
MaeI CTAG 2 cut(s) 26, 35
MaeII ACGT 2 cut(s) 277, 295
MaeIII GTNAC 4 cut(s) 37, 148, 262, 305
MalI GATC 2 cut(s) 141, 288
MboI GATC 2 cut(s) 139, 286
MhlI GDGCHC 1 cut(s) 219
MluI ACGCGT 1 cut(s) 184
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 3 cut(s) 20, 88, 254
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 31
NciI CCSGG 1 cut(s) 92
NdeII GATC 2 cut(s) 139, 286
NlaIII CATG 3 cut(s) 25, 123, 242
NmuCI GTSAC 2 cut(s) 148, 262
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
Psp1406I AACGTT 1 cut(s) 277
PspFI CCCAGC 1 cut(s) 71
PspPI GGNCC 1 cut(s) 125
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SalI GTCGAC 1 cut(s) 188
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 139, 286
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 219
SetI ASST 7 cut(s) 12, 99, 114, 274, 280, 298, 322
SinI GGWCC 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SsiI CCGC 1 cut(s) 315
SspMI CTAG 2 cut(s) 26, 35
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 3 cut(s) 43, 154, 328
TaiI ACGT 2 cut(s) 280, 298
TaqI TCGA 1 cut(s) 189
TseFI GTSAC 2 cut(s) 148, 262
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 2 cut(s) 148, 262
TspDTI ATGAA 2 cut(s) 17, 194
VpaK11BI GGWCC 1 cut(s) 125
XmiI GTMKAC 2 cut(s) 105, 189
XspI CTAG 2 cut(s) 26, 35
ZraI GACGTC 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.