Rroxscaffold_5G00362470

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000298
Physical Location & Seq
Reverse (-)
43469057 .. 43473590
4534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00362470.1

Sequence Viewer

Length: 1299 bp
ATGCCTAGAGAGAAGAATGGAAATCCTAAGAATCCCAGGAAAAGAGGAAAATGGAAACCCAAAGGTGCTTTCGATATCCAGCAACTTCCACAAGCTTTAGTAATGGACATTCTATCAAGGCTTTCCATCAAGACCCTTTACAATTGTAGGTGCGTCGGCAAAGACTGGCTTCACATGATTTGTGACCCTCAATTTGCTAATGGGCATCTTGGAGATGGCTTGTATGTATGCAATCCAATTTTGGGTGAGTACAATAGCATTCCTTCTCCTGGTAAGAGTATACCCTGCTGGTTCAAATTTCCAGGACTTGGTTTTAACGCCAGGACCAATGAGTACAAGGTCTTGCAAACATGTTCCAATGGCGAGTCTCAGATATACACCATTGGTACAGGAGTTTGGAGAAGCATTGGAATTGCTCCTAGTGGCACTTCCATGGTACATTCATTGTACTCACCGTTCAATTCTTTTCTGCATGGAGCACTTCATTGGTTTCCCTGCTCTTTTGACGGTTCTCAGTTTATACAGTCTTTCAACTTTGAGACAGAGCAATTTCGACCACTTACCCCACCATTCAAAGGTCATTTGAACTTATCCCAACATTATAATCATCTAAAGTTCGGAGTGTTAAAAGGTTGTCTCTTCCTAGGTGTGTTTGGTGCTTATAATAGTGAATTTGACATGTGGGTTATGAAGGATTATGGTGTCCAAGAGTCTCGGACAAAAATTCTTGTCATTGAAAACTTGTATCCATGGGTTCGCCATGGCCTCCATAATGCATATGAACCCATTGTGTTCTTCAATGATGGGGAAATCCTAATGACATACAAGGACCGGGTGGTGGTTCGTTATAATCAAGAAACAAAGACTGTCTCACCAACTGGGACAATTCAAACTCAGTCTCGATTTCGTGCAATTGCATACTGCCCTTGCTTTGTTTCACTCCATGATGTTTCAAATGGAGAAGAGGTGATAAGGTACATATGTTTAACTCATGTCAGCATCCTTACTAGGGTGAGAGACAATAACATATTTGAAGAGCTGTTTGCCAAAGAAGCTATAATTGTGCTGGTTCCGGCAAGTCAGCTAATCATAAGTCGAAAAACACTGAAGTCAGGGTCTGGCCAACCTGCTTTGGGAGATGGTCTTCCAAATAAAGCAATAAGTTCCTCTACTATTCAGATATGGAGAATGATGGTGGACAAACCTTTGGCCTCCGAAAGTGAAGCTTTGGTCGACACTACTCTCAGTTTGGTGGTTAGCAACCATGACGACTGGTCTCTCGGTAGCAGTTCTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

432

Amino Acids

48.65

Weight (kDa)

8.65

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 26 - 64 6.3e-06 F-box-like
FBA_1 PF07734 72 - 289 5.1e-16 F-box associated beta propeller domain
FBA_3 PF08268 75 - 290 6.3e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 603, 663, 849
Acc36I ACCTGC 1 cut(s) 1135
AccB7I CCANNNNNTGG 1 cut(s) 308
AccI GTMKAC 2 cut(s) 280, 1233
AcoI YGGCCR 1 cut(s) 1120
AcsI RAATTY 3 cut(s) 296, 671, 723
AcuI CTGAAG 1 cut(s) 1127
AfaI GTAC 6 cut(s) 251, 335, 388, 438, 449, 977
AfiI CCNNNNNNNGG 7 cut(s) 242, 269, 308, 575, 838, 1009, 1133
AflIII ACRYGT 2 cut(s) 350, 678
AhdI GACNNNNNGTC 1 cut(s) 1273
AjnI CCWGG 4 cut(s) 35, 268, 301, 320
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 5 cut(s) 95, 1039, 1055, 1084, 1226
AluI AGCT 5 cut(s) 95, 1039, 1055, 1084, 1226
Alw21I GWGCWC 1 cut(s) 481
Alw26I GTCTC 8 cut(s) 372, 533, 641, 717, 874, 903, 1011, 1281
AlwNI CAGNNNCTG 1 cut(s) 1118
AoxI GGCC 3 cut(s) 763, 1120, 1209
ApoI RAATTY 3 cut(s) 296, 671, 723
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AspA2I CCTAGG 1 cut(s) 643
AspS9I GGNCC 2 cut(s) 324, 829
AsuC2I CCSGG 1 cut(s) 833
AsuHPI GGTGA 5 cut(s) 257, 444, 864, 979, 1024
AvaII GGWCC 2 cut(s) 324, 829
AvrII CCTAGG 1 cut(s) 643
BaeI ACNNNNGTAYC 4 cut(s) 378, 411, 967, 1000
BalI TGGCCA 1 cut(s) 1122
BbsI GAAGAC 1 cut(s) 1136
Bbv12I GWGCWC 1 cut(s) 481
BccI CCATC 5 cut(s) 134, 209, 797, 1133, 1186
BciT130I CCWGG 4 cut(s) 37, 270, 303, 322
BciVI GTATCC 1 cut(s) 756
BcnI CCSGG 1 cut(s) 833
BcoDI GTCTC 8 cut(s) 372, 533, 641, 717, 874, 903, 1011, 1281
BfaI CTAG 4 cut(s) 6, 420, 644, 1008
BfuAI ACCTGC 1 cut(s) 1135
BfuI GTATCC 1 cut(s) 756
BlnI CCTAGG 1 cut(s) 643
Bme1390I CCNGG 5 cut(s) 37, 270, 303, 322, 833
Bme18I GGWCC 2 cut(s) 324, 829
BmeRI GACNNNNNGTC 1 cut(s) 1273
BmgT120I GGNCC 2 cut(s) 324, 829
BmiI GGNNCC 1 cut(s) 1071
BmrFI CCNGG 5 cut(s) 37, 270, 303, 322, 833
BmrI ACTGGG 1 cut(s) 888
BmsI GCATC 2 cut(s) 214, 1008
BmuI ACTGGG 1 cut(s) 888
BpiI GAAGAC 1 cut(s) 1136
BpuMI CCSGG 1 cut(s) 833
BsaI GGTCTC 1 cut(s) 1281
BsaJI CCNNGG 5 cut(s) 35, 432, 643, 749, 760
BsaXI ACNNNNNCTCC 2 cut(s) 951, 981
Bsc4I CCNNNNNNNGG 7 cut(s) 242, 269, 308, 575, 838, 1009, 1133
Bse1I ACTGG 3 cut(s) 170, 883, 1277
BseBI CCWGG 4 cut(s) 37, 270, 303, 322
BseDI CCNNGG 5 cut(s) 35, 432, 643, 749, 760
BseGI GGATG 1 cut(s) 999
BseLI CCNNNNNNNGG 7 cut(s) 242, 269, 308, 575, 838, 1009, 1133
BseMII CTCAG 4 cut(s) 383, 527, 908, 1258
BseNI ACTGG 3 cut(s) 170, 883, 1277
BshFI GGCC 3 cut(s) 765, 1122, 1211
BsiHKAI GWGCWC 1 cut(s) 481
BsiSI CCGG 2 cut(s) 832, 1073
BslFI GGGAC 1 cut(s) 895
BslI CCNNNNNNNGG 7 cut(s) 242, 269, 308, 575, 838, 1009, 1133
BsmAI GTCTC 8 cut(s) 372, 533, 641, 717, 874, 903, 1011, 1281
BsmFI GGGAC 1 cut(s) 895
BsmI GAATGC 1 cut(s) 258
BsnI GGCC 3 cut(s) 765, 1122, 1211
Bso31I GGTCTC 1 cut(s) 1281
Bsp1286I GDGCHC 1 cut(s) 481
Bsp19I CCATGG 3 cut(s) 432, 749, 760
BspANI GGCC 3 cut(s) 765, 1122, 1211
BspCNI CTCAG 4 cut(s) 382, 526, 907, 1257
BspLI GGNNCC 1 cut(s) 1071
BspMI ACCTGC 1 cut(s) 1135
BspQI GCTCTTC 1 cut(s) 1029
BspTNI GGTCTC 1 cut(s) 1281
BsrI ACTGG 3 cut(s) 170, 883, 1277
BssECI CCNNGG 5 cut(s) 35, 432, 643, 749, 760
BssNAI GTATAC 1 cut(s) 281
BssT1I CCWWGG 4 cut(s) 432, 643, 749, 760
Bst1107I GTATAC 1 cut(s) 281
Bst2UI CCWGG 4 cut(s) 37, 270, 303, 322
Bst4CI ACNGT 4 cut(s) 456, 509, 525, 868
Bst6I CTCTTC 3 cut(s) 644, 957, 1029
BstDEI CTNAG 5 cut(s) 27, 369, 513, 894, 1244
BstDSI CCRYGG 3 cut(s) 432, 749, 760
BstF5I GGATG 1 cut(s) 999
BstMAI GTCTC 8 cut(s) 372, 533, 641, 717, 874, 903, 1011, 1281
BstMWI GCNNNNNNNGC 1 cut(s) 1052
BstNI CCWGG 4 cut(s) 37, 270, 303, 322
BstNSI RCATGY 2 cut(s) 354, 682
BstSCI CCNGG 5 cut(s) 35, 268, 301, 320, 831
BstV2I GAAGAC 1 cut(s) 1136
BstZ17I GTATAC 1 cut(s) 281
BsuI GTATCC 1 cut(s) 756
BsuRI GGCC 3 cut(s) 765, 1122, 1211
BtgI CCRYGG 3 cut(s) 432, 749, 760
BtsCI GGATG 1 cut(s) 999
BtsIMutI CAGTG 1 cut(s) 1103
BveI ACCTGC 1 cut(s) 1135
CaiI CAGNNNCTG 1 cut(s) 1118
Cfr13I GGNCC 2 cut(s) 324, 829
CseI GACGC 1 cut(s) 142
Csp6I GTAC 6 cut(s) 250, 334, 387, 437, 448, 976
CviQI GTAC 6 cut(s) 250, 334, 387, 437, 448, 976
DdeI CTNAG 5 cut(s) 27, 369, 513, 894, 1244
DriI GACNNNNNGTC 1 cut(s) 1273
EaeI YGGCCR 1 cut(s) 1120
Eam1104I CTCTTC 3 cut(s) 644, 957, 1029
Eam1105I GACNNNNNGTC 1 cut(s) 1273
EarI CTCTTC 3 cut(s) 644, 957, 1029
Eco130I CCWWGG 4 cut(s) 432, 643, 749, 760
Eco31I GGTCTC 1 cut(s) 1281
Eco32I GATATC 1 cut(s) 76
Eco47I GGWCC 2 cut(s) 324, 829
Eco57I CTGAAG 1 cut(s) 1127
EcoRII CCWGG 4 cut(s) 35, 268, 301, 320
EcoRV GATATC 1 cut(s) 76
EcoT14I CCWWGG 4 cut(s) 432, 643, 749, 760
EcoT22I ATGCAT 1 cut(s) 778
ErhI CCWWGG 4 cut(s) 432, 643, 749, 760
FalI AAGNNNNNCTT 4 cut(s) 153, 185, 1210, 1242
FaqI GGGAC 1 cut(s) 895
FauNDI CATATG 2 cut(s) 778, 980
FblI GTMKAC 2 cut(s) 280, 1233
FokI GGATG 1 cut(s) 986
FspBI CTAG 4 cut(s) 6, 420, 644, 1008
HaeIII GGCC 3 cut(s) 765, 1122, 1211
HapII CCGG 2 cut(s) 832, 1073
HgaI GACGC 1 cut(s) 142
HincII GTYRAC 1 cut(s) 1234
HindII GTYRAC 1 cut(s) 1234
HindIII AAGCTT 2 cut(s) 93, 1224
HinfI GANTC 3 cut(s) 31, 365, 710
HpaII CCGG 2 cut(s) 832, 1073
HphI GGTGA 5 cut(s) 257, 444, 864, 979, 1024
Hpy166II GTNNAC 3 cut(s) 281, 1198, 1234
Hpy188I TCNGA 5 cut(s) 372, 620, 717, 1179, 1216
Hpy188III TCNNGA 3 cut(s) 130, 854, 900
Hpy8I GTNNAC 3 cut(s) 281, 1198, 1234
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 273, 685
HpyCH4III ACNGT 4 cut(s) 456, 509, 525, 868
HpyCH4V TGCA 6 cut(s) 231, 346, 472, 776, 911, 917
HpyF10VI GCNNNNNNNGC 1 cut(s) 1052
HpyF3I CTNAG 5 cut(s) 27, 369, 513, 894, 1244
LguI GCTCTTC 1 cut(s) 1029
LmnI GCTCC 2 cut(s) 421, 476
LweI GCATC 2 cut(s) 214, 1008
MaeI CTAG 4 cut(s) 6, 420, 644, 1008
MaeIII GTNAC 1 cut(s) 182
MboII GAAGA 6 cut(s) 25, 631, 787, 974, 1046, 1136
MfeI CAATTG 2 cut(s) 142, 912
MhlI GDGCHC 1 cut(s) 481
MlsI TGGCCA 1 cut(s) 1122
MluNI TGGCCA 1 cut(s) 1122
MlyI GAGTC 2 cut(s) 374, 719
MnlI CCTC 6 cut(s) 38, 198, 776, 958, 1177, 1222
Mox20I TGGCCA 1 cut(s) 1122
Mph1103I ATGCAT 1 cut(s) 778
MscI TGGCCA 1 cut(s) 1122
MseI TTAA 3 cut(s) 315, 626, 986
MslI CAYNNNNRTG 1 cut(s) 431
Msp20I TGGCCA 1 cut(s) 1122
MspI CCGG 2 cut(s) 832, 1073
MspR9I CCNGG 5 cut(s) 37, 270, 303, 322, 833
MunI CAATTG 2 cut(s) 142, 912
Mva1269I GAATGC 1 cut(s) 258
MvaI CCWGG 4 cut(s) 37, 270, 303, 322
MwoI GCNNNNNNNGC 1 cut(s) 1052
NciI CCSGG 1 cut(s) 833
NcoI CCATGG 3 cut(s) 432, 749, 760
NdeI CATATG 2 cut(s) 778, 980
NlaIV GGNNCC 1 cut(s) 1071
NmuCI GTSAC 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 778
NspI RCATGY 2 cut(s) 354, 682
PciI ACATGT 2 cut(s) 350, 678
PciSI GCTCTTC 1 cut(s) 1029
PctI GAATGC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 31
PflMI CCANNNNNTGG 1 cut(s) 308
PfoI TCCNGGA 1 cut(s) 301
PleI GAGTC 2 cut(s) 373, 718
PpsI GAGTC 2 cut(s) 373, 718
PscI ACATGT 2 cut(s) 350, 678
PsiI TTATAA 3 cut(s) 603, 663, 849
Psp6I CCWGG 4 cut(s) 35, 268, 301, 320
PspGI CCWGG 4 cut(s) 35, 268, 301, 320
PspN4I GGNNCC 1 cut(s) 1071
PspPI GGNCC 2 cut(s) 324, 829
PsrI GAACNNNNNNTAC 2 cut(s) 440, 472
PstNI CAGNNNCTG 1 cut(s) 1118
RsaI GTAC 6 cut(s) 251, 335, 388, 438, 449, 977
RsaNI GTAC 6 cut(s) 250, 334, 387, 437, 448, 976
RseI CAYNNNNRTG 1 cut(s) 431
SalI GTCGAC 1 cut(s) 1232
SapI GCTCTTC 1 cut(s) 1029
SaqAI TTAA 3 cut(s) 315, 626, 986
Sau96I GGNCC 2 cut(s) 324, 829
SchI GAGTC 2 cut(s) 374, 719
ScrFI CCNGG 5 cut(s) 37, 270, 303, 322, 833
SduI GDGCHC 1 cut(s) 481
SfaNI GCATC 2 cut(s) 214, 1008
SinI GGWCC 2 cut(s) 324, 829
SmiMI CAYNNNNRTG 1 cut(s) 431
SspMI CTAG 4 cut(s) 6, 420, 644, 1008
StyD4I CCNGG 5 cut(s) 35, 268, 301, 320, 831
StyI CCWWGG 4 cut(s) 432, 643, 749, 760
TaaI ACNGT 4 cut(s) 456, 509, 525, 868
TaqI TCGA 5 cut(s) 72, 553, 901, 1096, 1233
TatI WGTACW 3 cut(s) 249, 333, 447
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 3 cut(s) 315, 626, 986
Tru9I TTAA 3 cut(s) 315, 626, 986
TscAI CASTG 1 cut(s) 1110
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 4 cut(s) 432, 473, 704, 795
TspRI CASTG 1 cut(s) 1110
Van91I CCANNNNNTGG 1 cut(s) 308
VpaK11BI GGWCC 2 cut(s) 324, 829
XapI RAATTY 3 cut(s) 296, 671, 723
XceI RCATGY 2 cut(s) 354, 682
XmaJI CCTAGG 1 cut(s) 643
XmiI GTMKAC 2 cut(s) 280, 1233
XspI CTAG 4 cut(s) 6, 420, 644, 1008
Zsp2I ATGCAT 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.