Rh4DG219600

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000298
Physical Location & Seq
Reverse (-)
42052666 .. 42053052
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG219600.1

Sequence Viewer

Length: 387 bp
ATGGACATTCTATCAAGGGTTTCCATCAAGACCCTTTACAATTGTAGGTGCGTCTGCAAAGACTGGCTTCACATGATTTGTGACCGTCAATTTGCTAATGTACACTGTTTAAGATCATCCATCAGCATCTTGATCAGGACCAATCCCAGTGCAGAAGGAAAAAGGAAACTTGGATTAGTCCAGATAGAAAAATGTGCTGGCTCTCGTTTGCAAGTCGAAAGAATGAGGTTTGCTCCACAAAATAGCCTATGGCTACCAGTTTCCACTGCTTCTGAGGTATTTCTGATAAATTCATGCAATGGATTAGTTTTTTTGGCTATGGGGCATCTTGGAGATGGCTCGTATGTATGCAATCCAATTTTGGGTGTGCAATCCAATTTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

128

Amino Acids

14.26

Weight (kDa)

9.06

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 289
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 2 cut(s) 362, 381
ApoI RAATTY 1 cut(s) 289
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AspS9I GGNCC 1 cut(s) 138
AvaII GGWCC 1 cut(s) 138
BccI CCATC 3 cut(s) 32, 128, 329
BclI TGATCA 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 138
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 2 cut(s) 135, 334
BmuI ACTGGG 1 cut(s) 141
BplI GAGNNNNNCTC 2 cut(s) 217, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 381
Bse1I ACTGG 3 cut(s) 68, 147, 257
Bse3DI GCAATG 1 cut(s) 304
BseGI GGATG 1 cut(s) 116
BseLI CCNNNNNNNGG 2 cut(s) 362, 381
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 3 cut(s) 68, 147, 257
BsgI GTGCAG 1 cut(s) 171
BslI CCNNNNNNNGG 2 cut(s) 362, 381
Bsp1407I TGTACA 1 cut(s) 100
Bsp143I GATC 2 cut(s) 113, 132
BspCNI CTCAG 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 304
BsrGI TGTACA 1 cut(s) 100
BsrI ACTGG 3 cut(s) 68, 147, 257
BssMI GATC 2 cut(s) 113, 132
Bst4CI ACNGT 2 cut(s) 86, 107
BstAUI TGTACA 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 273
BstF5I GGATG 1 cut(s) 116
BstKTI GATC 2 cut(s) 116, 135
BstMBI GATC 2 cut(s) 113, 132
BtsCI GGATG 1 cut(s) 116
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 3 cut(s) 103, 154, 264
Cac8I GCNNGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 138
CseI GACGC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 101
CviAII CATG 2 cut(s) 73, 294
CviJI RGCY 6 cut(s) 67, 201, 246, 253, 317, 339
CviKI_1 RGCY 6 cut(s) 67, 201, 246, 253, 317, 339
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 1 cut(s) 273
DpnI GATC 2 cut(s) 115, 134
DpnII GATC 2 cut(s) 113, 132
Eco47I GGWCC 1 cut(s) 138
FaeI CATG 2 cut(s) 76, 297
FaiI YATR 6 cut(s) 74, 250, 295, 320, 345, 349
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FatI CATG 2 cut(s) 72, 293
FbaI TGATCA 1 cut(s) 132
FokI GGATG 1 cut(s) 103
HgaI GACGC 1 cut(s) 40
Hin1II CATG 2 cut(s) 76, 297
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 274, 285
Hpy188III TCNNGA 4 cut(s) 28, 130, 136, 181
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 2 cut(s) 86, 107
HpyCH4V TGCA 6 cut(s) 57, 152, 211, 297, 351, 370
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 2 cut(s) 76, 297
Ksp22I TGATCA 1 cut(s) 132
Kzo9I GATC 2 cut(s) 113, 132
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 6 cut(s) 49, 121, 160, 183, 194, 270
LweI GCATC 2 cut(s) 135, 334
MaeIII GTNAC 1 cut(s) 80
MalI GATC 2 cut(s) 115, 134
MboI GATC 2 cut(s) 113, 132
MfeI CAATTG 1 cut(s) 40
MluCI AATT 5 cut(s) 40, 89, 289, 357, 376
MnlI CCTC 2 cut(s) 219, 268
MseI TTAA 1 cut(s) 110
MunI CAATTG 1 cut(s) 40
NdeII GATC 2 cut(s) 113, 132
NlaIII CATG 2 cut(s) 76, 297
NmuCI GTSAC 1 cut(s) 80
PspPI GGNCC 1 cut(s) 138
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 110
Sau3AI GATC 2 cut(s) 113, 132
Sau96I GGNCC 1 cut(s) 138
SetI ASST 3 cut(s) 50, 230, 279
SfaNI GCATC 2 cut(s) 135, 334
SinI GGWCC 1 cut(s) 138
Sse9I AATT 5 cut(s) 40, 89, 289, 357, 376
TaaI ACNGT 2 cut(s) 86, 107
TaqI TCGA 1 cut(s) 216
TasI AATT 5 cut(s) 40, 89, 289, 357, 376
TatI WGTACW 1 cut(s) 100
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 3 cut(s) 110, 154, 271
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 282
TspRI CASTG 3 cut(s) 110, 154, 271
VpaK11BI GGWCC 1 cut(s) 138
XapI RAATTY 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.