FvH4_3g36371

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000298
Physical Location & Seq
Reverse (-)
31186828 .. 31188179
1352 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36371.t1

Sequence Viewer

Length: 618 bp
ATGGGGACAGGAGTTTGGAGAAGCATTGGAATTGTTCCCAAGTGCGGGAGTATTCTCAAGGCACCATTTGATGCTATTTTGCATGGAGCTCTTCATTGGGTTTCGTTTTGGGGTAAGAGCAGTAAGTTTATACATTCTTTCGACTTTGAAAGAGAAGAGTTTCAACGAATACCCCCTCCTGGCAACTTTGGACTGATAGAGAAGCAGTATACAGATAGTTTGAAGTTGGGAGTGTTAGGAGATTGTCTCATTTTATCTGTGTTTTCTGATGATTCTAGCAGATTTGACATGTGGGTTATGAAGGATTATGGTATCCAAGAGTCTTGGACTAGAAGTCTTGTTATTGAAAACTTCTTTCCAAAGGAACTTAGCTTTGTTTGTTGTGAACCTATTATTCTTTTGAGTAATGGGGAAATCCTGATGTTCAACGATGATGATCCTTGGGTTATAGTTTGTTATAATAAAGAAGAAAAGAGTTTCAGGGAAGCTAGAATAACTTCGACTACATTGCCATTGATTCAACTTGGTTACTGTCCATCCTTTGTTTCGCTCCATGATGTTTCAAAGGGAGAGGTGGTGAAAAGGGTAAGAGATCTCAAGACAAGCTGCTTGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

206

Amino Acids

23.33

Weight (kDa)

5.6

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 4 - 183 1.6e-13 F-box associated beta propeller domain
FBA_3 PF08268 5 - 169 1.6e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 459
AccB1I GGYRCC 1 cut(s) 61
AccI GTMKAC 1 cut(s) 209
AciI CCGC 1 cut(s) 45
AclWI GGATC 1 cut(s) 431
AfiI CCNNNNNNNGG 3 cut(s) 44, 45, 179
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 7 cut(s) 149, 164, 223, 347, 427, 521, 564
AhdI GACNNNNNGTC 1 cut(s) 333
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 4 cut(s) 89, 372, 488, 606
AluI AGCT 4 cut(s) 89, 372, 488, 606
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 1 cut(s) 431
ApeKI GCWGC 1 cut(s) 606
Asp700I GAANNNNTTC 2 cut(s) 159, 496
AsuHPI GGTGA 1 cut(s) 589
BanI GGYRCC 1 cut(s) 61
BanII GRGCYC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 593
BccI CCATC 1 cut(s) 544
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BciT130I CCWGG 1 cut(s) 180
BciVI GTATCC 1 cut(s) 323
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 3 cut(s) 276, 330, 489
BfuI GTATCC 1 cut(s) 323
BglII AGATCT 1 cut(s) 592
BisI GCNGC 1 cut(s) 607
BlsI GCNGC 1 cut(s) 608
Bme1390I CCNGG 1 cut(s) 180
BmeRI GACNNNNNGTC 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 1 cut(s) 61
BplI GAGNNNNNCTC 2 cut(s) 231, 263
BpuEI CTTGAG 2 cut(s) 41, 581
BsaBI GATNNNNATC 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 440
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 45, 179
Bse3DI GCAATG 1 cut(s) 506
Bse8I GATNNNNATC 1 cut(s) 435
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 440
BseGI GGATG 1 cut(s) 536
BseJI GATNNNNATC 1 cut(s) 435
BseLI CCNNNNNNNGG 3 cut(s) 44, 45, 179
BseMI GCAATG 1 cut(s) 506
BseXI GCAGC 1 cut(s) 593
BshNI GGYRCC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 91
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 3 cut(s) 44, 45, 179
BsmAI GTCTC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 2 cut(s) 436, 592
BspACI CCGC 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 1 cut(s) 431
BspQI GCTCTTC 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 506
BssECI CCNNGG 1 cut(s) 440
BssMI GATC 2 cut(s) 436, 592
BssNAI GTATAC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 440
Bst1107I GTATAC 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 533
Bst6I CTCTTC 2 cut(s) 96, 150
BstDEI CTNAG 1 cut(s) 368
BstF5I GGATG 1 cut(s) 536
BstKTI GATC 2 cut(s) 439, 595
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 2 cut(s) 436, 592
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 593
BstX2I RGATCY 1 cut(s) 592
BstYI RGATCY 1 cut(s) 592
BstZ17I GTATAC 1 cut(s) 210
BsuI GTATCC 1 cut(s) 323
BtsCI GGATG 1 cut(s) 536
CviAII CATG 3 cut(s) 83, 289, 554
CviJI RGCY 4 cut(s) 89, 372, 488, 606
CviKI_1 RGCY 4 cut(s) 89, 372, 488, 606
DdeI CTNAG 1 cut(s) 368
DpnI GATC 2 cut(s) 438, 594
DpnII GATC 2 cut(s) 436, 592
DriI GACNNNNNGTC 1 cut(s) 333
Eam1104I CTCTTC 2 cut(s) 96, 150
Eam1105I GACNNNNNGTC 1 cut(s) 333
EarI CTCTTC 2 cut(s) 96, 150
Ecl136II GAGCTC 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 440
Eco24I GRGCYC 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 89
EcoICRI GAGCTC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 440
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 440
FaeI CATG 3 cut(s) 86, 292, 557
FaiI YATR 9 cut(s) 84, 131, 210, 290, 299, 309, 449, 459, 555
FaqI GGGAC 1 cut(s) 19
FatI CATG 3 cut(s) 82, 288, 553
FauI CCCGC 1 cut(s) 38
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 1 cut(s) 607
FokI GGATG 1 cut(s) 523
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 607
FspBI CTAG 3 cut(s) 276, 330, 489
GluI GCNGC 1 cut(s) 607
Hin1II CATG 3 cut(s) 86, 292, 557
HinfI GANTC 3 cut(s) 272, 320, 517
HphI GGTGA 1 cut(s) 589
Hpy166II GTNNAC 2 cut(s) 210, 386
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 2 cut(s) 418, 598
Hpy8I GTNNAC 2 cut(s) 210, 386
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4V TGCA 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 368
Hsp92II CATG 3 cut(s) 86, 292, 557
Kzo9I GATC 2 cut(s) 436, 592
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 2 cut(s) 86, 555
LpnPI CCDG 4 cut(s) 165, 192, 431, 466
Lsp1109I GCAGC 1 cut(s) 593
LweI GCATC 1 cut(s) 61
MaeI CTAG 3 cut(s) 276, 330, 489
MaeIII GTNAC 1 cut(s) 527
MalI GATC 2 cut(s) 438, 594
MboI GATC 2 cut(s) 436, 592
MboII GAAGA 3 cut(s) 83, 167, 479
MflI RGATCY 1 cut(s) 592
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 1 cut(s) 30
MlyI GAGTC 1 cut(s) 329
MnlI CCTC 2 cut(s) 186, 565
MroXI GAANNNNTTC 2 cut(s) 159, 496
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
NdeII GATC 2 cut(s) 436, 592
NlaIII CATG 3 cut(s) 86, 292, 557
NlaIV GGNNCC 1 cut(s) 63
NspI RCATGY 1 cut(s) 292
PciI ACATGT 1 cut(s) 288
PciSI GCTCTTC 1 cut(s) 96
PdmI GAANNNNTTC 2 cut(s) 159, 496
PfeI GAWTC 2 cut(s) 272, 517
PkrI GCNGC 1 cut(s) 608
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PscI ACATGT 1 cut(s) 288
PsiI TTATAA 1 cut(s) 459
Psp124BI GAGCTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 63
PsuI RGATCY 1 cut(s) 592
SacI GAGCTC 1 cut(s) 91
SapI GCTCTTC 1 cut(s) 96
SatI GCNGC 1 cut(s) 607
Sau3AI GATC 2 cut(s) 436, 592
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 1 cut(s) 91
SetI ASST 6 cut(s) 91, 374, 391, 490, 576, 608
SfaNI GCATC 1 cut(s) 61
SmlI CTYRAG 2 cut(s) 56, 596
SmoI CTYRAG 2 cut(s) 56, 596
Sse9I AATT 1 cut(s) 30
SsiI CCGC 1 cut(s) 45
SspMI CTAG 3 cut(s) 276, 330, 489
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 1 cut(s) 178
StyI CCWWGG 1 cut(s) 440
TaaI ACNGT 1 cut(s) 533
TaqI TCGA 2 cut(s) 141, 500
TasI AATT 1 cut(s) 30
TfiI GAWTC 2 cut(s) 272, 517
TseI GCWGC 1 cut(s) 606
TspDTI ATGAA 2 cut(s) 83, 314
XceI RCATGY 1 cut(s) 292
XmiI GTMKAC 1 cut(s) 209
XmnI GAANNNNTTC 2 cut(s) 159, 496
XspI CTAG 3 cut(s) 276, 330, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.