Rh4AG222700

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000298
Physical Location & Seq
Forward (+)
52201569 .. 52204992
3424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG222700.1

Sequence Viewer

Length: 333 bp
ATGAGCATCCCATCAGCATTTTGGATTGTGCCACCATTTAATGGACTTCAGGGTATAGTTTCAGCTCGCCAAATTGCCAACTCTTTTGTTTCTTGCATCGGAATTAAACCTAGAGAGGAAATGCCTAGAGAAAAGAATGGAAATCCTATGAATATCAAGAAAAGAGGAAAATGGAAACCAAAAGGTCCTTTGAATATCCAGCAACTTCCACAGGGTTTAGTGATGGACATTCTGTTAAGGCTTTCCATCAAGTCCCTCTGCAATTGCAGAAATGTTTGCAAAGAGTGGCTTCATATGATTCTGACCCTCAGTTTGCTCATCTACGCCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

110

Amino Acids

12.41

Weight (kDa)

10.05

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 66 - 106 6.5e-08 F-box domain
F-box-like PF12937 66 - 102 2.4e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 41
AciI CCGC 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 1 cut(s) 193
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
ArsI GACNNNNNNTTYG 2 cut(s) 295, 327
AspS9I GGNCC 1 cut(s) 185
AvaII GGWCC 1 cut(s) 185
BccI CCATC 3 cut(s) 19, 217, 254
BfaI CTAG 2 cut(s) 111, 126
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmsI GCATC 2 cut(s) 15, 105
Bsc4I CCNNNNNNNGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 6
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 322
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 238
BspACI CCGC 1 cut(s) 327
BspCNI CTCAG 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 308
BstF5I GGATG 1 cut(s) 6
BtsCI GGATG 1 cut(s) 6
Cac8I GCNNGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 185
CviJI RGCY 3 cut(s) 65, 241, 289
CviKI_1 RGCY 3 cut(s) 65, 241, 289
DdeI CTNAG 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 32
EcoO109I RGGNCCY 1 cut(s) 185
FaiI YATR 4 cut(s) 56, 149, 294, 296
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 1 cut(s) 238
FauNDI CATATG 1 cut(s) 294
Fnu4HI GCNGC 1 cut(s) 327
Fsp4HI GCNGC 1 cut(s) 327
FspBI CTAG 2 cut(s) 111, 126
GluI GCNGC 1 cut(s) 327
HinfI GANTC 1 cut(s) 298
Hpy188I TCNGA 2 cut(s) 101, 303
Hpy188III TCNNGA 1 cut(s) 157
HpyCH4V TGCA 4 cut(s) 96, 261, 267, 279
HpyF3I CTNAG 1 cut(s) 308
LpnPI CCDG 3 cut(s) 35, 197, 212
LweI GCATC 2 cut(s) 15, 105
MaeI CTAG 2 cut(s) 111, 126
MfeI CAATTG 1 cut(s) 262
MluCI AATT 3 cut(s) 72, 102, 262
MnlI CCTC 4 cut(s) 109, 158, 266, 317
MseI TTAA 3 cut(s) 39, 105, 236
MunI CAATTG 1 cut(s) 262
NdeI CATATG 1 cut(s) 294
PfeI GAWTC 1 cut(s) 298
PflMI CCANNNNNTGG 1 cut(s) 41
PkrI GCNGC 1 cut(s) 328
PpuMI RGGWCCY 1 cut(s) 185
Psp5II RGGWCCY 1 cut(s) 185
PspPI GGNCC 1 cut(s) 185
PspPPI RGGWCCY 1 cut(s) 185
SaqAI TTAA 3 cut(s) 39, 105, 236
SatI GCNGC 1 cut(s) 327
Sau96I GGNCC 1 cut(s) 185
SetI ASST 3 cut(s) 67, 112, 187
SfaNI GCATC 2 cut(s) 15, 105
SgeI CNNG 9 cut(s) 62, 78, 105, 123, 138, 169, 211, 224, 262
SinI GGWCC 1 cut(s) 185
Sse9I AATT 3 cut(s) 72, 102, 262
SsiI CCGC 1 cut(s) 327
SspMI CTAG 2 cut(s) 111, 126
TasI AATT 3 cut(s) 72, 102, 262
TauI GCSGC 1 cut(s) 329
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 3 cut(s) 39, 105, 236
Tru9I TTAA 3 cut(s) 39, 105, 236
TspDTI ATGAA 2 cut(s) 164, 281
Van91I CCANNNNNTGG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 185
XcmI CCANNNNNNNNNTGG 1 cut(s) 18
XspI CTAG 2 cut(s) 111, 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.