Rw4G018980

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000298
Physical Location & Seq
Reverse (-)
42036697 .. 42039552
2856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G018980.1

Sequence Viewer

Length: 1314 bp
ATGCCTAGAGAAAAGATTGGAAATCCTATGAATCCCAGGAAAAGAGGAAACTGGAAACCCAAAGTTGCTTTCAATATACAGGAACTTCCACAAGCATTAGTAATGGACATTCTATCTAGGCTTTCCATCAAGGCCCTTTACAATTGTAGGGGCGTCTGCAAAGACTGGCTTCACATAATTTGTGACCCTCAATTTGCTAATGTACACTGTCTAAGATCACCCGTCGGCATTTTGATCAGGACCAATCCCCGTGCAAAAGGACAAAGGAGACTTGGATTAATCCAGATAGAAAAATGTGCTGGCTCTCGTTTGCGAGTTGAAAGAATGAGGTTTGCTCCCCAAAATATCCTGCCAGTTTCCGATGCTTCTGAAGTTAGGTTGATAAATTCATGCAATGGATTAGTTTGTTTGGCTAAGGGGCTTGATGATGGCTTGTATGTATGCAATCCAATTTTGGGTGAGTATATTAGCATTCCTTCTCCTGATAAGAGTATGACCTGCTTGTTCAAATTTGTTGGACTTGGTTTTAATGCCAGGACCAAGGAGTACAAGGTCTTGCAAACATACTCCAATGGCCAGTCTGAGATATACACCATTGGTACAGGAGTTTGGAGAAGCATTGGAAAGGCTCCTAGTGGCAGTTTTTCCATGGTACCGTTCAATTCTTTTCTGCATGGAGCTCTTCATTGGGTTCCCTACTCTTTTGACGGTTCTCAGTTTATACAGTCTTTCAACTTTGAGGCAGAACAATTTCGACCACTAGCCCCACCATTCAAAGGTCATTTGAACTTATCCCAACATTATAATCATCTGACGTTGGGAGTATTAAAAGGTTGTCTCTTCTTATGTGTGCTTGGTGCCCATAATAGTGAATTTGACATGTGGGTTATGAAGGATTATGGTGTCCAAGAGTCTTGGACAAAAATTCTTGTCATTGAAAACTTGTATCCATGGTTTGGCCATGTCCTGCATAATGCATATGAACCCATTGTGTTCTTCAATGATGGGGAAATCCTAATGACATTCAAGGACCGGGTGGTGGTTCGTTATAATCAAGAAACAAAGACTGTCTCACGAACTGGGATAATTCAAACTCAGTCTCGATTTCGTGCAATTGCATACTGCCCTTGCTTTGTTTCACTCCATGATGTTTCAAATGGAGAGGAGGTAATAAGGTACAAAGATACAGAATTAACTCGTATATTTAGTTTGCCAATCTCCATTAGTTCAGCATATGTAAATTTTGCAGTATGGAATGTGCTATATAGTCCCGAGTCCCGACTTGAGAGACATGTTGTATGTGGAAGAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

437

Amino Acids

49.72

Weight (kDa)

9.16

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 26 - 65 6.7e-08 F-box-like
F-box PF00646 26 - 65 4.7e-07 F-box domain
FBA_1 PF07734 122 - 370 3.2e-26 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 123 - 236 1.9e-06 F-box protein At3g26010-like, beta-propeller
FBA_3 PF08268 125 - 368 7.5e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 804, 1050
Acc36I ACCTGC 1 cut(s) 506
Acc65I GGTACC 1 cut(s) 652
AccB1I GGYRCC 2 cut(s) 652, 857
AccB7I CCANNNNNTGG 1 cut(s) 956
AcoI YGGCCR 2 cut(s) 574, 958
AcsI RAATTY 5 cut(s) 385, 509, 872, 924, 1240
AcuI CTGAAG 1 cut(s) 390
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 5 cut(s) 204, 548, 601, 654, 1178
AfiI CCNNNNNNNGG 4 cut(s) 455, 776, 956, 1039
AflIII ACRYGT 2 cut(s) 879, 1291
AjnI CCWGG 2 cut(s) 35, 533
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 1 cut(s) 680
AluI AGCT 1 cut(s) 680
Alw21I GWGCWC 1 cut(s) 682
Alw26I GTCTC 5 cut(s) 262, 842, 1075, 1104, 1282
Ama87I CYCGRG 1 cut(s) 1271
AoxI GGCC 3 cut(s) 132, 574, 958
ApoI RAATTY 5 cut(s) 385, 509, 872, 924, 1240
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AseI ATTAAT 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 750
Asp718I GGTACC 1 cut(s) 652
AspS9I GGNCC 4 cut(s) 133, 240, 537, 1030
AsuC2I CCSGG 1 cut(s) 1034
AsuHPI GGTGA 2 cut(s) 210, 470
AvaI CYCGRG 1 cut(s) 1271
AvaII GGWCC 3 cut(s) 240, 537, 1030
BaeGI GKGCMC 1 cut(s) 862
BaeI ACNNNNGTAYC 2 cut(s) 591, 624
BalI TGGCCA 2 cut(s) 576, 960
BanI GGYRCC 2 cut(s) 652, 857
BanII GRGCYC 1 cut(s) 682
Bbv12I GWGCWC 1 cut(s) 682
BccI CCATC 3 cut(s) 134, 422, 998
BciT130I CCWGG 2 cut(s) 37, 535
BciVI GTATCC 1 cut(s) 957
BclI TGATCA 1 cut(s) 234
BcnI CCSGG 1 cut(s) 1034
BcoDI GTCTC 5 cut(s) 262, 842, 1075, 1104, 1282
BfaI CTAG 4 cut(s) 6, 117, 633, 761
BfuAI ACCTGC 1 cut(s) 506
BfuI GTATCC 1 cut(s) 957
Bme1390I CCNGG 3 cut(s) 37, 535, 1034
Bme18I GGWCC 3 cut(s) 240, 537, 1030
BmeT110I CYCGRG 1 cut(s) 1271
BmgT120I GGNCC 4 cut(s) 133, 240, 537, 1030
BmiI GGNNCC 4 cut(s) 630, 654, 693, 859
BmrFI CCNGG 3 cut(s) 37, 535, 1034
BmrI ACTGGG 1 cut(s) 1089
BmsI GCATC 1 cut(s) 352
BmuI ACTGGG 1 cut(s) 1089
BplI GAGNNNNNCTC 2 cut(s) 319, 351
Bpu10I CCTNAGC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 1304
BpuMI CCSGG 1 cut(s) 1034
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 4 cut(s) 35, 540, 648, 950
BsaXI ACNNNNNCTCC 2 cut(s) 1152, 1182
Bsc4I CCNNNNNNNGG 4 cut(s) 455, 776, 956, 1039
Bse1I ACTGG 5 cut(s) 56, 170, 353, 577, 1084
Bse3DI GCAATG 1 cut(s) 400
BseBI CCWGG 2 cut(s) 37, 535
BseDI CCNNGG 4 cut(s) 35, 540, 648, 950
BseLI CCNNNNNNNGG 4 cut(s) 455, 776, 956, 1039
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 3 cut(s) 573, 728, 1109
BseNI ACTGG 5 cut(s) 56, 170, 353, 577, 1084
BseRI GAGGAG 1 cut(s) 1178
BseSI GKGCMC 1 cut(s) 862
BshFI GGCC 3 cut(s) 134, 576, 960
BshNI GGYRCC 2 cut(s) 652, 857
BsiHKAI GWGCWC 1 cut(s) 682
BsiHKCI CYCGRG 1 cut(s) 1271
BsiSI CCGG 1 cut(s) 1033
BslFI GGGAC 2 cut(s) 1254, 1261
BslI CCNNNNNNNGG 4 cut(s) 455, 776, 956, 1039
BsmAI GTCTC 5 cut(s) 262, 842, 1075, 1104, 1282
BsmFI GGGAC 2 cut(s) 1254, 1261
BsmI GAATGC 1 cut(s) 471
BsnI GGCC 3 cut(s) 134, 576, 960
BsoBI CYCGRG 1 cut(s) 1271
Bsp1286I GDGCHC 2 cut(s) 682, 862
Bsp1407I TGTACA 1 cut(s) 202
Bsp143I GATC 2 cut(s) 215, 234
Bsp19I CCATGG 2 cut(s) 648, 950
BspANI GGCC 3 cut(s) 134, 576, 960
BspCNI CTCAG 3 cut(s) 574, 727, 1108
BspLI GGNNCC 4 cut(s) 630, 654, 693, 859
BspMI ACCTGC 1 cut(s) 506
BspQI GCTCTTC 1 cut(s) 687
BspT107I GGYRCC 2 cut(s) 652, 857
BsrDI GCAATG 1 cut(s) 400
BsrGI TGTACA 1 cut(s) 202
BsrI ACTGG 5 cut(s) 56, 170, 353, 577, 1084
BssECI CCNNGG 4 cut(s) 35, 540, 648, 950
BssMI GATC 2 cut(s) 215, 234
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 3 cut(s) 540, 648, 950
Bst2UI CCWGG 2 cut(s) 37, 535
Bst4CI ACNGT 5 cut(s) 209, 657, 710, 726, 1069
Bst6I CTCTTC 2 cut(s) 687, 845
BstACI GRCGYC 1 cut(s) 153
BstAUI TGTACA 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 5 cut(s) 212, 414, 582, 714, 1095
BstDSI CCRYGG 2 cut(s) 648, 950
BstKTI GATC 2 cut(s) 218, 237
BstMAI GTCTC 5 cut(s) 262, 842, 1075, 1104, 1282
BstMBI GATC 2 cut(s) 215, 234
BstNI CCWGG 2 cut(s) 37, 535
BstNSI RCATGY 2 cut(s) 883, 1295
BstSCI CCNGG 3 cut(s) 35, 533, 1032
BstSLI GKGCMC 1 cut(s) 862
BsuI GTATCC 1 cut(s) 957
BsuRI GGCC 3 cut(s) 134, 576, 960
BtgI CCRYGG 2 cut(s) 648, 950
BtsIMutI CAGTG 1 cut(s) 205
BveI ACCTGC 1 cut(s) 506
Cac8I GCNNGC 1 cut(s) 301
Cfr13I GGNCC 4 cut(s) 133, 240, 537, 1030
CseI GACGC 1 cut(s) 142
Csp6I GTAC 5 cut(s) 203, 547, 600, 653, 1177
CviAII CATG 8 cut(s) 390, 649, 674, 880, 951, 962, 1145, 1292
CviQI GTAC 5 cut(s) 203, 547, 600, 653, 1177
DdeI CTNAG 5 cut(s) 212, 414, 582, 714, 1095
DpnI GATC 2 cut(s) 217, 236
DpnII GATC 2 cut(s) 215, 234
EaeI YGGCCR 2 cut(s) 574, 958
Eam1104I CTCTTC 2 cut(s) 687, 845
EarI CTCTTC 2 cut(s) 687, 845
Ecl136II GAGCTC 1 cut(s) 680
Eco130I CCWWGG 3 cut(s) 540, 648, 950
Eco24I GRGCYC 1 cut(s) 682
Eco47I GGWCC 3 cut(s) 240, 537, 1030
Eco53kI GAGCTC 1 cut(s) 680
Eco57I CTGAAG 1 cut(s) 390
Eco88I CYCGRG 1 cut(s) 1271
EcoICRI GAGCTC 1 cut(s) 680
EcoO109I RGGNCCY 1 cut(s) 133
EcoRII CCWGG 2 cut(s) 35, 533
EcoT14I CCWWGG 3 cut(s) 540, 648, 950
EcoT22I ATGCAT 1 cut(s) 979
EcoT38I GRGCYC 1 cut(s) 682
ErhI CCWWGG 3 cut(s) 540, 648, 950
FaeI CATG 8 cut(s) 393, 652, 677, 883, 954, 965, 1148, 1295
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FaqI GGGAC 2 cut(s) 1254, 1261
FatI CATG 8 cut(s) 389, 648, 673, 879, 950, 961, 1144, 1291
FauNDI CATATG 2 cut(s) 979, 1234
FbaI TGATCA 1 cut(s) 234
FriOI GRGCYC 1 cut(s) 682
FspBI CTAG 4 cut(s) 6, 117, 633, 761
HaeIII GGCC 3 cut(s) 134, 576, 960
HapII CCGG 1 cut(s) 1033
HgaI GACGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 8 cut(s) 393, 652, 677, 883, 954, 965, 1148, 1295
HinfI GANTC 3 cut(s) 31, 911, 1274
HpaII CCGG 1 cut(s) 1033
HphI GGTGA 2 cut(s) 210, 470
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 4 cut(s) 361, 370, 583, 813
Hpy188III TCNNGA 8 cut(s) 238, 283, 482, 1055, 1074, 1101, 1271, 1278
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 2 cut(s) 486, 886
HpyCH4III ACNGT 5 cut(s) 209, 657, 710, 726, 1069
HpyCH4IV ACGT 1 cut(s) 815
HpyF3I CTNAG 5 cut(s) 212, 414, 582, 714, 1095
HpySE526I ACGT 1 cut(s) 815
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 8 cut(s) 393, 652, 677, 883, 954, 965, 1148, 1295
KpnI GGTACC 1 cut(s) 656
Ksp22I TGATCA 1 cut(s) 234
Kzo9I GATC 2 cut(s) 215, 234
LguI GCTCTTC 1 cut(s) 687
LmnI GCTCC 3 cut(s) 340, 634, 677
LweI GCATC 1 cut(s) 352
MaeI CTAG 4 cut(s) 6, 117, 633, 761
MaeII ACGT 1 cut(s) 815
MaeIII GTNAC 1 cut(s) 182
MalI GATC 2 cut(s) 217, 236
MboI GATC 2 cut(s) 215, 234
MboII GAAGA 3 cut(s) 674, 832, 988
MfeI CAATTG 2 cut(s) 142, 1113
MhlI GDGCHC 2 cut(s) 682, 862
MlsI TGGCCA 2 cut(s) 576, 960
MluNI TGGCCA 2 cut(s) 576, 960
MlyI GAGTC 2 cut(s) 920, 1283
MmeI TCCRAC 1 cut(s) 496
MnlI CCTC 6 cut(s) 38, 198, 321, 733, 1156, 1159
Mox20I TGGCCA 2 cut(s) 576, 960
Mph1103I ATGCAT 1 cut(s) 979
MroXI GAANNNNTTC 1 cut(s) 750
MscI TGGCCA 2 cut(s) 576, 960
MseI TTAA 4 cut(s) 278, 528, 827, 1193
MslI CAYNNNNRTG 1 cut(s) 867
Msp20I TGGCCA 2 cut(s) 576, 960
MspI CCGG 1 cut(s) 1033
MspR9I CCNGG 3 cut(s) 37, 535, 1034
MunI CAATTG 2 cut(s) 142, 1113
Mva1269I GAATGC 1 cut(s) 471
MvaI CCWGG 2 cut(s) 37, 535
NciI CCSGG 1 cut(s) 1034
NcoI CCATGG 2 cut(s) 648, 950
NdeI CATATG 2 cut(s) 979, 1234
NdeII GATC 2 cut(s) 215, 234
NlaIII CATG 8 cut(s) 393, 652, 677, 883, 954, 965, 1148, 1295
NlaIV GGNNCC 4 cut(s) 630, 654, 693, 859
NmuCI GTSAC 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 979
NspI RCATGY 2 cut(s) 883, 1295
PciI ACATGT 2 cut(s) 879, 1291
PciSI GCTCTTC 1 cut(s) 687
PctI GAATGC 1 cut(s) 471
PdmI GAANNNNTTC 1 cut(s) 750
PfeI GAWTC 1 cut(s) 31
PflMI CCANNNNNTGG 1 cut(s) 956
PleI GAGTC 2 cut(s) 919, 1282
PpsI GAGTC 2 cut(s) 919, 1282
PscI ACATGT 2 cut(s) 879, 1291
PshBI ATTAAT 1 cut(s) 278
PsiI TTATAA 2 cut(s) 804, 1050
Psp124BI GAGCTC 1 cut(s) 682
Psp6I CCWGG 2 cut(s) 35, 533
PspGI CCWGG 2 cut(s) 35, 533
PspN4I GGNNCC 4 cut(s) 630, 654, 693, 859
PspPI GGNCC 4 cut(s) 133, 240, 537, 1030
RsaI GTAC 5 cut(s) 204, 548, 601, 654, 1178
RsaNI GTAC 5 cut(s) 203, 547, 600, 653, 1177
RseI CAYNNNNRTG 1 cut(s) 867
SacI GAGCTC 1 cut(s) 682
SapI GCTCTTC 1 cut(s) 687
SaqAI TTAA 4 cut(s) 278, 528, 827, 1193
Sau3AI GATC 2 cut(s) 215, 234
Sau96I GGNCC 4 cut(s) 133, 240, 537, 1030
SchI GAGTC 2 cut(s) 920, 1283
ScrFI CCNGG 3 cut(s) 37, 535, 1034
SduI GDGCHC 2 cut(s) 682, 862
SfaNI GCATC 1 cut(s) 352
SinI GGWCC 3 cut(s) 240, 537, 1030
SmiMI CAYNNNNRTG 1 cut(s) 867
SmlI CTYRAG 1 cut(s) 1283
SmoI CTYRAG 1 cut(s) 1283
SspMI CTAG 4 cut(s) 6, 117, 633, 761
SstI GAGCTC 1 cut(s) 682
StyD4I CCNGG 3 cut(s) 35, 533, 1032
StyI CCWWGG 3 cut(s) 540, 648, 950
TaaI ACNGT 5 cut(s) 209, 657, 710, 726, 1069
TaiI ACGT 1 cut(s) 818
TaqI TCGA 2 cut(s) 754, 1102
TatI WGTACW 2 cut(s) 202, 546
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 4 cut(s) 278, 528, 827, 1193
Tru9I TTAA 4 cut(s) 278, 528, 827, 1193
TscAI CASTG 1 cut(s) 212
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 5 cut(s) 44, 378, 674, 905, 996
TspRI CASTG 1 cut(s) 212
Van91I CCANNNNNTGG 1 cut(s) 956
VpaK11BI GGWCC 3 cut(s) 240, 537, 1030
VspI ATTAAT 1 cut(s) 278
XapI RAATTY 5 cut(s) 385, 509, 872, 924, 1240
XceI RCATGY 2 cut(s) 883, 1295
XmnI GAANNNNTTC 1 cut(s) 750
XspI CTAG 4 cut(s) 6, 117, 633, 761
Zsp2I ATGCAT 1 cut(s) 979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.