RchiOBHm_Chr4g0419981

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000298
Physical Location & Seq
Forward (+)
45578114 .. 45578968
855 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38979

Sequence Viewer

Length: 855 bp
ATGAATCCGGGGAAAAGAGCAGCCAGTCGTAGCAGCCAAGGGCAAAGAGGAAACTGGAAACCCAAAGGTGCTTTCAATATCCAAGAACTTCCACAAGCTTTAGTAATAGACATTCTATCAAGGCTTTCCATCAAGGCCCTCTACAGTTGCAGATGCGTTTGCGAAGACTGGCTTCATATAATTCATGACCCTCAATTTGCTCGGCTACACCTTCTAAGATCACCCATCAGTATCTTGATCAAGACCTCGTCCCGTGCAAGAGATCAAGGGAAATTTGATTTAATCCATATATCTGGGTCTCCTATGCGAGTCGAGAGAATGAGGTTTGCTCCCAATAATGTTCTACCAGTTTGCCCTGTTTCTGTAGTTAAGTTGATGAACTCATGCAATGGTTTACTTTGTGTATGTGAGTGGATGAGATATGATAGGGTGTATGTGTGCAACCCAATTTTAGGAGAGTACATTAGCATTCCTCTTCCTGATAGGAATAGGCATTACTCGATTGATTTTGTTGCACTTGGTTTTAACACTAGGACCAATGAATACAAGATCGTGCAAACAAATTACTATTCCAACTACGCCCATGAGCCTGAGGCTATGATATACACCATTGGTACAGGAGTTTGGAGAAGTATTGGAAAGCCTCCTAGTGGCTATAGAGGTGGCCCATACCATTCAATTCCTTTCTGCATGGAGCTCTTCATTGGATTCCCGTTTATTACTGTCCTTCTCCATCTATACAATCTTTCGACTTTGAATGCTGCTTTGTATTTTCATTGTGTTTGGAACATTTGTTATATGTGGACATTTTCATTTGGATCAAGACATTTGTTAAATTTGGAAATTTTCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

284

Amino Acids

32.66

Weight (kDa)

9.2

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 27 - 66 2.6e-07 F-box domain
F-box-like PF12937 27 - 66 4.4e-07 F-box-like
FBA_3 PF08268 122 - 214 1.5e-09 F-box associated beta propeller domain
FBA_1 PF07734 124 - 215 1.8e-13 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 125 - 211 4.5e-08 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29150 FvH4_1g29150 FvH4_2g35201 FvH4_3g36371 FvH4_4g12590 FvH4_4g12590 FvH4_4g13903 FvH4_4g16630 FvH4_4g16630 FvH4_4g16640 FvH4_4g16640 FvH4_4g16640
malus_domestica MD03G1174100.v1.1 MD13G1177900.v1.1 MD13G1178000.v1.1 MD13G1178100.v1.1
prunus_persica Prupe.1G146800_v2.0.a1 Prupe.1G146900_v2.0.a1 Prupe.1G147000_v2.0.a1 Prupe.1G147100_v2.0.a1 Prupe.1G147200_v2.0.a1 Prupe.1G185600_v2.0.a1 Prupe.1G529300_v2.0.a1 Prupe.6G154200_v2.0.a1 Prupe.6G217100_v2.0.a1
pyrus_communis pycom03g13170 pycom03g13180 pycom05g29500 pycom13g15350 pycom13g15380 pycom13g15390 pycom13g15400
rosa_chinensis RchiOBHm_Chr4g0395601 RchiOBHm_Chr4g0395611 RchiOBHm_Chr4g0395621 RchiOBHm_Chr4g0413281 RchiOBHm_Chr4g0419621 RchiOBHm_Chr4g0419631 RchiOBHm_Chr4g0419901 RchiOBHm_Chr4g0419911 RchiOBHm_Chr4g0419981 RchiOBHm_Chr4g0420081 RchiOBHm_Chr4g0420091 RchiOBHm_Chr6g0306731
rosa_laevigata RLG00000006686 RLG00000007789 RLG00000007793 RLG00000007794 RLG00000007808 RLG00000007809 RLG00000011318
rosa_multiflora Rmu_co8471007.1_g000001 Rmu_sc0000717.1_g000001 Rmu_sc0003141.1_g000001 Rmu_sc0006133.1_g000013 Rmu_sc0013209.1_g000001 Rmu_sc0013209.1_g000002 Rmu_sc0017785.1_g000004 Rmu_sc0017786.1_g000003 Rmu_sc0023895.1_g000004 Rmu_sc0032897.1_g000004
rosa_roxburghii Rroxscaffold_5G00339000 Rroxscaffold_5G00357390 Rroxscaffold_5G00362460 Rroxscaffold_5G00362470 Rroxscaffold_5G00362730 Rroxscaffold_5G00362740 Rroxscaffold_5G00362800
rosa_rugosa Rorug04G0158700 Rorug04G0158800 Rorug04G0158800 Rorug04G0158900 Rorug04G0159000 Rorug04G0159100 Rorug04G0159200 Rorug04G0159300 Rorug04G0161200 Rorug04G0161300 Rorug04G0161300 Rorug04G0161400 Rorug04G0162000 Rorug04G0162100
rosa_samantha Rh1BG049900 Rh4AG179100 Rh4AG179200 Rh4AG220700 Rh4AG222300 Rh4AG222400 Rh4AG222700 Rh4AG222900 Rh4BG222400 Rh4BG222600 Rh4BG224700 Rh4BG224800 Rh4BG225300 Rh4BG225400 Rh4BG338700 Rh4BG338800 Rh4CG235500 Rh4DG174300 Rh4DG219400 Rh4DG219600 Rh4DG221300 Rh4DG221400 Rh4DG221700 Rh5CG465500 Rh5DG455700 Rh6BG417700 Rh6BG436500 Rh6BG436600 Rh6CG478500 Rh6CG478600 Rh6DG465600 Rh6DG465700 Rh6DG492000
rosa_wichuraiana Rw4G018980 Rw4G019160 Rw4G019170 Rw4G019190 Rw4G028680 Rw5G040160 Rw6G040460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 826
AcsI RAATTY 3 cut(s) 272, 835, 843
AfaI GTAC 2 cut(s) 461, 616
AfiI CCNNNNNNNGG 2 cut(s) 452, 650
AgsI TTSAA 3 cut(s) 76, 678, 757
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 2 cut(s) 98, 697
AluI AGCT 2 cut(s) 98, 697
Alw21I GWGCWC 1 cut(s) 699
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 1 cut(s) 826
AoxI GGCC 2 cut(s) 135, 664
ApeKI GCWGC 3 cut(s) 20, 33, 761
ApoI RAATTY 3 cut(s) 272, 835, 843
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AspS9I GGNCC 3 cut(s) 136, 534, 665
AsuC2I CCSGG 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 213
AvaII GGWCC 1 cut(s) 534
AxyI CCTNAGG 1 cut(s) 591
BaeI ACNNNNGTAYC 2 cut(s) 606, 639
BanII GRGCYC 1 cut(s) 699
BbsI GAAGAC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 699
BbvI GCAGC 3 cut(s) 32, 45, 748
BccI CCATC 3 cut(s) 137, 233, 741
BclI TGATCA 1 cut(s) 237
BcnI CCSGG 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 303
BfaI CTAG 2 cut(s) 531, 648
BfmI CTRYAG 3 cut(s) 142, 363, 655
BisI GCNGC 3 cut(s) 21, 34, 762
BlsI GCNGC 3 cut(s) 22, 35, 763
Bme1390I CCNGG 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 534
BmgT120I GGNCC 3 cut(s) 136, 534, 665
BmrFI CCNGG 1 cut(s) 9
BmsI GCATC 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 171
BplI GAGNNNNNCTC 2 cut(s) 313, 345
BpuMI CCSGG 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 303
BsaJI CCNNGG 2 cut(s) 8, 37
Bsc4I CCNNNNNNNGG 2 cut(s) 452, 650
Bse1I ACTGG 4 cut(s) 24, 59, 173, 347
Bse21I CCTNAGG 1 cut(s) 591
Bse3DI GCAATG 1 cut(s) 394
BseDI CCNNGG 2 cut(s) 8, 37
BseGI GGATG 1 cut(s) 420
BseLI CCNNNNNNNGG 2 cut(s) 452, 650
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 582
BseNI ACTGG 4 cut(s) 24, 59, 173, 347
BseXI GCAGC 3 cut(s) 32, 45, 748
BshFI GGCC 2 cut(s) 137, 666
BsiHKAI GWGCWC 1 cut(s) 699
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 452, 650
BsmAI GTCTC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 235
BsmI GAATGC 2 cut(s) 468, 763
BsnI GGCC 2 cut(s) 137, 666
Bso31I GGTCTC 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 699
Bsp143I GATC 5 cut(s) 218, 237, 262, 549, 818
BspANI GGCC 2 cut(s) 137, 666
BspCNI CTCAG 1 cut(s) 583
BspHI TCATGA 1 cut(s) 184
BspPI GGATC 1 cut(s) 826
BspQI GCTCTTC 1 cut(s) 704
BspTNI GGTCTC 1 cut(s) 303
BsrDI GCAATG 1 cut(s) 394
BsrI ACTGG 4 cut(s) 24, 59, 173, 347
BssECI CCNNGG 2 cut(s) 8, 37
BssMI GATC 5 cut(s) 218, 237, 262, 549, 818
BssT1I CCWWGG 1 cut(s) 37
Bst4CI ACNGT 2 cut(s) 146, 724
Bst6I CTCTTC 2 cut(s) 480, 704
BstDEI CTNAG 2 cut(s) 215, 591
BstF5I GGATG 1 cut(s) 420
BstKTI GATC 5 cut(s) 221, 240, 265, 552, 821
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 5 cut(s) 218, 237, 262, 549, 818
BstSCI CCNGG 1 cut(s) 7
BstSFI CTRYAG 3 cut(s) 142, 363, 655
BstV1I GCAGC 3 cut(s) 32, 45, 748
BstV2I GAAGAC 1 cut(s) 171
BstXI CCANNNNNNTGG 1 cut(s) 293
Bsu36I CCTNAGG 1 cut(s) 591
BsuRI GGCC 2 cut(s) 137, 666
BtsCI GGATG 1 cut(s) 420
CciI TCATGA 1 cut(s) 184
Cfr13I GGNCC 3 cut(s) 136, 534, 665
Csp6I GTAC 2 cut(s) 460, 615
CviAII CATG 4 cut(s) 185, 384, 584, 691
CviQI GTAC 2 cut(s) 460, 615
DdeI CTNAG 2 cut(s) 215, 591
DpnI GATC 5 cut(s) 220, 239, 264, 551, 820
DpnII GATC 5 cut(s) 218, 237, 262, 549, 818
Eam1104I CTCTTC 2 cut(s) 480, 704
EarI CTCTTC 2 cut(s) 480, 704
Ecl136II GAGCTC 1 cut(s) 697
Eco130I CCWWGG 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 699
Eco31I GGTCTC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 534
Eco53kI GAGCTC 1 cut(s) 697
Eco81I CCTNAGG 1 cut(s) 591
EcoICRI GAGCTC 1 cut(s) 697
EcoO109I RGGNCCY 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 699
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 4 cut(s) 188, 387, 587, 694
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FaqI GGGAC 1 cut(s) 235
FatI CATG 4 cut(s) 184, 383, 583, 690
FbaI TGATCA 1 cut(s) 237
Fnu4HI GCNGC 3 cut(s) 21, 34, 762
FokI GGATG 1 cut(s) 427
FriOI GRGCYC 1 cut(s) 699
Fsp4HI GCNGC 3 cut(s) 21, 34, 762
FspBI CTAG 2 cut(s) 531, 648
GluI GCNGC 3 cut(s) 21, 34, 762
HaeIII GGCC 2 cut(s) 137, 666
HapII CCGG 1 cut(s) 8
Hin1II CATG 4 cut(s) 188, 387, 587, 694
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 3 cut(s) 4, 309, 708
HpaII CCGG 1 cut(s) 8
HphI GGTGA 1 cut(s) 213
Hpy166II GTNNAC 2 cut(s) 395, 804
Hpy188III TCNNGA 6 cut(s) 185, 235, 241, 313, 479, 822
Hpy8I GTNNAC 2 cut(s) 395, 804
HpyAV CCTTC 2 cut(s) 221, 737
HpyCH4III ACNGT 2 cut(s) 146, 724
HpyCH4V TGCA 7 cut(s) 150, 257, 387, 441, 515, 556, 690
HpyF3I CTNAG 2 cut(s) 215, 591
Hsp92II CATG 4 cut(s) 188, 387, 587, 694
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 5 cut(s) 218, 237, 262, 549, 818
LguI GCTCTTC 1 cut(s) 704
LmnI GCTCC 2 cut(s) 334, 694
Lsp1109I GCAGC 3 cut(s) 32, 45, 748
LweI GCATC 1 cut(s) 143
MaeI CTAG 2 cut(s) 531, 648
MalI GATC 5 cut(s) 220, 239, 264, 551, 820
MboI GATC 5 cut(s) 218, 237, 262, 549, 818
MboII GAAGA 3 cut(s) 176, 467, 691
MhlI GDGCHC 1 cut(s) 699
MluCI AATT 8 cut(s) 180, 194, 272, 447, 562, 678, 835, 843
MlyI GAGTC 1 cut(s) 318
MmeI TCCRAC 1 cut(s) 597
MnlI CCTC 9 cut(s) 41, 149, 201, 256, 315, 483, 586, 653, 654
MseI TTAA 4 cut(s) 281, 369, 525, 833
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 9
Mva1269I GAATGC 2 cut(s) 468, 763
NciI CCSGG 1 cut(s) 9
NdeII GATC 5 cut(s) 218, 237, 262, 549, 818
NlaIII CATG 4 cut(s) 188, 387, 587, 694
NmeAIII GCCGAG 1 cut(s) 181
PagI TCATGA 1 cut(s) 184
PciSI GCTCTTC 1 cut(s) 704
PctI GAATGC 2 cut(s) 468, 763
PfeI GAWTC 2 cut(s) 4, 708
PflFI GACNNNGTC 1 cut(s) 247
PkrI GCNGC 3 cut(s) 22, 35, 763
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Psp124BI GAGCTC 1 cut(s) 699
PspPI GGNCC 3 cut(s) 136, 534, 665
PsyI GACNNNGTC 1 cut(s) 247
RsaI GTAC 2 cut(s) 461, 616
RsaNI GTAC 2 cut(s) 460, 615
SacI GAGCTC 1 cut(s) 699
SapI GCTCTTC 1 cut(s) 704
SaqAI TTAA 4 cut(s) 281, 369, 525, 833
SatI GCNGC 3 cut(s) 21, 34, 762
Sau3AI GATC 5 cut(s) 218, 237, 262, 549, 818
Sau96I GGNCC 3 cut(s) 136, 534, 665
SchI GAGTC 1 cut(s) 318
ScrFI CCNGG 1 cut(s) 9
SduI GDGCHC 1 cut(s) 699
SetI ASST 7 cut(s) 70, 100, 213, 248, 326, 664, 699
SfaNI GCATC 1 cut(s) 143
SfcI CTRYAG 3 cut(s) 142, 363, 655
SinI GGWCC 1 cut(s) 534
Sse9I AATT 8 cut(s) 180, 194, 272, 447, 562, 678, 835, 843
SspMI CTAG 2 cut(s) 531, 648
SstI GAGCTC 1 cut(s) 699
StyD4I CCNGG 1 cut(s) 7
StyI CCWWGG 1 cut(s) 37
TaaI ACNGT 2 cut(s) 146, 724
TaqI TCGA 3 cut(s) 312, 500, 749
TasI AATT 8 cut(s) 180, 194, 272, 447, 562, 678, 835, 843
TatI WGTACW 1 cut(s) 459
TfiI GAWTC 2 cut(s) 4, 708
Tru1I TTAA 4 cut(s) 281, 369, 525, 833
Tru9I TTAA 4 cut(s) 281, 369, 525, 833
TseI GCWGC 3 cut(s) 20, 33, 761
TspDTI ATGAA 9 cut(s) 17, 164, 173, 392, 555, 691, 764, 801, 838
Tth111I GACNNNGTC 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 534
XapI RAATTY 3 cut(s) 272, 835, 843
XspI CTAG 2 cut(s) 531, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.