Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000099

Physical Location & Seq

Genomic Coordinates Forward (+)

32639248 .. 32639727

Gene Structure 480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49260

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGTCTATGATCACTGTATTGCTCATCTTTCTGCTTCTTTATCTCCCCCCTTACATTTCCTTGATTCCATTACTCCAAACCAAACTATCAAAGACGGAGACGTTTTAGTCTCGAGCAGGAAGCTCTTTGTGCTACGGTTCTTCAGCCCTGGAAATTCTGGCAAAAGTTACGTTGGAGTTTGGTATAACAAAGTTCCAGAGCGGACCAGTGTTTGGGTAGCAAATAGAGACAACCATGTCAATGATTCCTTTGGACTTCTAGTGATCGATGCAGATGGAGGCCTTGTCATATATGGAAAGGACAGAAAACTCCCTCTTTGGTCAGCTAATGTTACTCTCTCTTCTCCAAAAAACTCCGTGGCCAAGTTGTTGGATACAGGTAACTTCGTTTTGTTTGAGAATGGCCGAAGCCTGTGGGAAGGGTTTGATTATCCCTCAAATACGATGCTTCCCTTAATGAAAATTGGGCTAAACCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

159

Amino Acids

17.7

Weight (kDa)

8.71

Isoelectric Point (pI)

29.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	69 - 158	1.1e-24	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11340 AT1G11340 AT1G11340 AT1G11410 AT1G11410 AT1G11410 AT1G11410
fragaria_vesca	FvH4_3g03230 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03241 FvH4_3g03242 FvH4_3g03243 FvH4_3g03300 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03310 FvH4_3g03310 FvH4_6g07960
malus_domestica	MD00G1203200.v1.1 MD02G1260900.v1.1 MD05G1263100.v1.1 MD05G1332300.v1.1 MD05G1332400.v1.1 MD05G1332600.v1.1 MD05G1332700.v1.1 MD05G1333400.v1.1 MD05G1333500.v1.1 MD05G1333700.v1.1 MD05G1334000.v1.1 MD10G1291100.v1.1 MD10G1291200.v1.1 MD10G1307900.v1.1 MD10G1308000.v1.1 MD10G1308200.v1.1 MD10G1308700.v1.1 MD17G1273200.v1.1
prunus_persica	Prupe.4G031200_v2.0.a1 Prupe.4G031400_v2.0.a1 Prupe.4G031500_v2.0.a1 Prupe.4G031600_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.8G238600_v2.0.a1
pyrus_communis	pycom02g22290 pycom02g22300 pycom05g30390 pycom05g30430 pycom05g30450 pycom05g30470 pycom05g30510 pycom05g30530 pycom05g30560 pycom05g30570 pycom10g24330 pycom10g25940 pycom10g25950 pycom10g25960 pycom10g25970 pycom10g25980 pycom10g25990 pycom10g26000 pycom10g26010 pycom10g26020 pycom10g26030 pycom17g27160
rosa_chinensis	RchiOBHm_Chr2g0119951 RchiOBHm_Chr2g0119961 RchiOBHm_Chr2g0119981 RchiOBHm_Chr2g0120011 RchiOBHm_Chr2g0120061 RchiOBHm_Chr2g0120071 RchiOBHm_Chr3g0477341 RchiOBHm_Chr4g0411711 RchiOBHm_Chr4g0411831 RchiOBHm_Chr4g0411951 RchiOBHm_Chr5g0004871 RchiOBHm_Chr5g0004881 RchiOBHm_Chr5g0004891 RchiOBHm_Chr5g0004921 RchiOBHm_Chr5g0004931 RchiOBHm_Chr5g0004941 RchiOBHm_Chr5g0004961 RchiOBHm_Chr5g0004971 RchiOBHm_Chr5g0004991 RchiOBHm_Chr5g0005011 RchiOBHm_Chr5g0005031 RchiOBHm_Chr5g0005041 RchiOBHm_Chr5g0005051 RchiOBHm_Chr5g0034351 RchiOBHm_Chr5g0034371 RchiOBHm_Chr5g0035421 RchiOBHm_Chr5g0035471 RchiOBHm_Chr5g0035541 RchiOBHm_Chr5g0035551 RchiOBHm_Chr5g0035581 RchiOBHm_Chr5g0035651 RchiOBHm_Chr5g0035661 RchiOBHm_Chr5g0035791 RchiOBHm_Chr5g0035821 RchiOBHm_Chr5g0035881 RchiOBHm_Chr5g0035941 RchiOBHm_Chr5g0066181
rosa_laevigata	RLG00000008339 RLG00000018505 RLG00000018510 RLG00000018738 RLG00000018741 RLG00000023265 RLG00000031268 RLG00000031270 RLG00000031272 RLG00000031274 RLG00000031275 RLG00000031278 RLG00000031280 RLG00000031281 RLG00000031282 RLG00000032920 RLG00000033622 RLG00000033628 RLG00000033641
rosa_multiflora	Rmu_co8015890.1_g000001 Rmu_co8119476.1_g000001 Rmu_co8172744.1_g000001 Rmu_co8181302.1_g000001 Rmu_co8369629.1_g000001 Rmu_co8379407.1_g000001 Rmu_co8412887.1_g000001 Rmu_sc0000084.1_g000011 Rmu_sc0000084.1_g000012 Rmu_sc0000084.1_g000031 Rmu_sc0000593.1_g000007 Rmu_sc0000593.1_g000011 Rmu_sc0000593.1_g000014 Rmu_sc0000657.1_g000020 Rmu_sc0000711.1_g000010 Rmu_sc0000711.1_g000048 Rmu_sc0000813.1_g000017 Rmu_sc0001493.1_g000041 Rmu_sc0002935.1_g000014 Rmu_sc0002935.1_g000019 Rmu_sc0003096.1_g000002 Rmu_sc0003096.1_g000009 Rmu_sc0003096.1_g000010 Rmu_sc0003096.1_g000014 Rmu_sc0003541.1_g000052 Rmu_sc0004315.1_g000002 Rmu_sc0006173.1_g000007 Rmu_sc0006173.1_g000035 Rmu_sc0006369.1_g000003 Rmu_sc0007790.1_g000002 Rmu_sc0009702.1_g000001 Rmu_sc0009702.1_g000002 Rmu_sc0009702.1_g000004 Rmu_sc0009702.1_g000006 Rmu_sc0010714.1_g000001 Rmu_sc0010714.1_g000002 Rmu_sc0010714.1_g000007 Rmu_sc0010714.1_g000008 Rmu_sc0010714.1_g000009 Rmu_sc0011169.1_g000008 Rmu_sc0013877.1_g000001 Rmu_sc0013932.1_g000001 Rmu_sc0015231.1_g000005 Rmu_sc0016543.1_g000002 Rmu_sc0016543.1_g000003 Rmu_sc0017275.1_g000001 Rmu_sc0026861.1_g000001 Rmu_sc0030606.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044840 Rroxscaffold_1G00044850 Rroxscaffold_1G00044900 Rroxscaffold_1G00044980 Rroxscaffold_1G00044990 Rroxscaffold_1G00070600 Rroxscaffold_1G00070610 Rroxscaffold_1G00070630 Rroxscaffold_1G00070650 Rroxscaffold_1G00070680 Rroxscaffold_1G00070700 Rroxscaffold_1G00070710 Rroxscaffold_1G00070740 Rroxscaffold_1G00070750 Rroxscaffold_2G00123770 Rroxscaffold_2G00123820 Rroxscaffold_2G00123830 Rroxscaffold_2G00123900 Rroxscaffold_2G00123920 Rroxscaffold_4G00293110 Rroxscaffold_5G00353540 Rroxscaffold_5G00353620
rosa_rugosa	Rorug01G0307800 Rorug02G0225800 Rorug02G0225900 Rorug04G0414800 Rorug04G0414800 Rorug04G0414800 Rorug04G0414900 Rorug04G0415000 Rorug05G0151600
rosa_samantha	Rh3DG237000 Rh4BG166800 Rh5BG042300 Rh5CG045900 Rh5CG046000 Rh5CG046100 Rh5CG046200 Rh5CG046300 Rh5CG046400 Rh5CG046500 Rh5CG046600 Rh5CG046800 Rh5CG047000 Rh5CG047100 Rh5CG047300 Rh5CG047500 Rh5CG047600 Rh5CG267500 Rh5CG276200
rosa_wichuraiana	Rw0G000290 Rw0G007740 Rw0G022180 Rw1G002050 Rw2G022580 Rw2G022600 Rw2G022620 Rw2G022650 Rw2G022660 Rw4G014100 Rw4G014220 Rw5G004100 Rw5G004110 Rw5G004120 Rw5G004130 Rw5G004140 Rw5G004160 Rw5G004170 Rw5G016790 Rw5G021680 Rw5G022380 Rw5G022450 Rw5G022470 Rw5G022490 Rw5G022540 Rw5G022570 Rw5G050160 Rw7G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	107, 236
AccB7I	CCANNNNNTGG	1 cut(s)	213
AccBSI	CCGCTC	1 cut(s)	202
AciI	CCGC	1 cut(s)	202
AcoI	YGGCCR	2 cut(s)	360, 403
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	213
AgeI	ACCGGT	1 cut(s)	474
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	2 cut(s)	124, 326
AluI	AGCT	2 cut(s)	124, 326
Alw26I	GTCTC	3 cut(s)	93, 115, 222
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	3 cut(s)	280, 360, 403
ApoI	RAATTY	1 cut(s)	154
AsiGI	ACCGGT	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	204
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	204
BalI	TGGCCA	1 cut(s)	362
BccI	CCATC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	150
BciVI	GTATCC	1 cut(s)	367
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	3 cut(s)	93, 115, 222
BfaI	CTAG	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	259, 435
Bsa29I	ATCGAT	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	148, 357
BsaWI	WCCGGW	1 cut(s)	474
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
Bse118I	RCCGGY	1 cut(s)	474
Bse1I	ACTGG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	150
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	148, 357
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	207
BshFI	GGCC	3 cut(s)	282, 362, 405
BshTI	ACCGGT	1 cut(s)	474
BshVI	ATCGAT	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	475
BslI	CCNNNNNNNGG	1 cut(s)	213
BsmAI	GTCTC	3 cut(s)	93, 115, 222
BsmBI	CGTCTC	1 cut(s)	93
BsnI	GGCC	3 cut(s)	282, 362, 405
BsoBI	CYCGRG	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	10, 264
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	3 cut(s)	282, 362, 405
BspDI	ATCGAT	1 cut(s)	267
BsrBI	CCGCTC	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	207
BssAI	RCCGGY	1 cut(s)	474
BssECI	CCNNGG	2 cut(s)	148, 357
BssMI	GATC	2 cut(s)	10, 264
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	17, 138
Bst6I	CTCTTC	1 cut(s)	346
BstDSI	CCRYGG	1 cut(s)	357
BstKTI	GATC	2 cut(s)	13, 267
BstMAI	GTCTC	3 cut(s)	93, 115, 222
BstMBI	GATC	2 cut(s)	10, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstXI	CCANNNNNNTGG	1 cut(s)	370
Bsu15I	ATCGAT	1 cut(s)	267
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	3 cut(s)	282, 362, 405
BsuTUI	ATCGAT	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	357
BtsIMutI	CAGTG	2 cut(s)	13, 214
Cfr10I	RCCGGY	1 cut(s)	474
Cfr13I	GGNCC	1 cut(s)	204
ClaI	ATCGAT	1 cut(s)	267
CspAI	ACCGGT	1 cut(s)	474
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	8 cut(s)	124, 147, 282, 326, 362, 405, 411, 469
CviKI_1	RGCY	8 cut(s)	124, 147, 282, 326, 362, 405, 411, 469
DpnI	GATC	2 cut(s)	12, 266
DpnII	GATC	2 cut(s)	10, 264
DrdI	GACNNNNNNGTC	2 cut(s)	107, 236
DseDI	GACNNNNNNGTC	2 cut(s)	107, 236
EaeI	YGGCCR	2 cut(s)	360, 403
Eam1104I	CTCTTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	346
Eco147I	AGGCCT	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	148
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	1 cut(s)	239
FaiI	YATR	6 cut(s)	9, 186, 237, 290, 292, 294
FatI	CATG	1 cut(s)	235
FbaI	TGATCA	1 cut(s)	10
FspBI	CTAG	1 cut(s)	260
HaeIII	GGCC	3 cut(s)	282, 362, 405
HapII	CCGG	1 cut(s)	475
Hin1II	CATG	1 cut(s)	239
HinfI	GANTC	2 cut(s)	65, 245
HpaII	CCGG	1 cut(s)	475
Hpy188III	TCNNGA	2 cut(s)	112, 197
HpyAV	CCTTC	1 cut(s)	413
HpyCH4III	ACNGT	2 cut(s)	17, 138
HpyCH4IV	ACGT	2 cut(s)	102, 171
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpySE526I	ACGT	2 cut(s)	102, 171
Hsp92II	CATG	1 cut(s)	239
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	10, 264
LpnPI	CCDG	8 cut(s)	103, 135, 144, 162, 210, 220, 363, 425
LweI	GCATC	2 cut(s)	259, 435
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	2 cut(s)	102, 171
MaeIII	GTNAC	3 cut(s)	167, 331, 380
MalI	GATC	2 cut(s)	12, 266
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	2 cut(s)	10, 264
MboII	GAAGA	2 cut(s)	133, 333
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	2 cut(s)	154, 462
MluNI	TGGCCA	1 cut(s)	362
MmeI	TCCRAC	2 cut(s)	154, 351
MnlI	CCTC	3 cut(s)	272, 324, 445
Mox20I	TGGCCA	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	362
MseI	TTAA	1 cut(s)	455
MslI	CAYNNNNRTG	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	362
MspI	CCGG	1 cut(s)	475
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	130
NdeII	GATC	2 cut(s)	10, 264
NlaIII	CATG	1 cut(s)	239
PaeR7I	CTCGAG	1 cut(s)	112
PceI	AGGCCT	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	65, 245
PflMI	CCANNNNNTGG	1 cut(s)	213
PinAI	ACCGGT	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	455
Sau3AI	GATC	2 cut(s)	10, 264
Sau96I	GGNCC	1 cut(s)	204
ScrFI	CCNGG	1 cut(s)	150
SetI	ASST	5 cut(s)	105, 126, 174, 328, 382
SfaNI	GCATC	2 cut(s)	259, 435
Sfr274I	CTCGAG	1 cut(s)	112
SinI	GGWCC	1 cut(s)	204
SlaI	CTCGAG	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	2 cut(s)	154, 462
SseBI	AGGCCT	1 cut(s)	282
SsiI	CCGC	1 cut(s)	202
SspMI	CTAG	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	2 cut(s)	17, 138
TaiI	ACGT	2 cut(s)	105, 174
TaqI	TCGA	2 cut(s)	113, 267
TasI	AATT	2 cut(s)	154, 462
TfiI	GAWTC	2 cut(s)	65, 245
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TscAI	CASTG	2 cut(s)	20, 214
TspDTI	ATGAA	1 cut(s)	473
TspGWI	ACGGA	2 cut(s)	111, 346
TspRI	CASTG	2 cut(s)	20, 214
Van91I	CCANNNNNTGG	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	1 cut(s)	154
XhoI	CTCGAG	1 cut(s)	112
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.