Rroxscaffold_1G00044980

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
64031598 .. 64034899
3302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00044980.1

Sequence Viewer

Length: 462 bp
ATGGCAGCATATGAAAATAATATAAAATCCGGGTTGCGAACGAGAGACAACCCGATCAATGATACCCATGGAGTACTATCGATCACCGGTGATGGAGGCCTTGTCATACATGGAAAGGACCCAAGTACCCCTCTTTGGTCCGCAAACGTTACTCTCTCTTCACCAAACAATTTCACGGCCAAACTTTTGGATACAGGAAATCTGGTTTTACTTGAGAATAGTAGCCAAAGAGTTTTGTGGGAAGGCTTTGATTACCCCTCGGATACACTGCTTCCCTTTATGAAGATTGGGCTGAACCGGCGGTCCGGGTTGGAGAAGCACCTAACATCTTGGAAATCAAAAGATGACCCGAGAACCGGGAGTTGTACATTTGGGATAGACCCGATAGGGGTTCCGCGATTGTTTCGCGCATGGGTAGAGAAGAATTGTGGCGGGGCGGCCCTTGGACCGGGGACAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

153

Amino Acids

16.58

Weight (kDa)

6.82

Isoelectric Point (pI)

32.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 15 - 112 2.2e-29 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000099)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11340 AT1G11340 AT1G11340 AT1G11410 AT1G11410 AT1G11410 AT1G11410
fragaria_vesca FvH4_3g03230 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03241 FvH4_3g03242 FvH4_3g03243 FvH4_3g03300 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03310 FvH4_3g03310 FvH4_6g07960
malus_domestica MD00G1203200.v1.1 MD02G1260900.v1.1 MD05G1263100.v1.1 MD05G1332300.v1.1 MD05G1332400.v1.1 MD05G1332600.v1.1 MD05G1332700.v1.1 MD05G1333400.v1.1 MD05G1333500.v1.1 MD05G1333700.v1.1 MD05G1334000.v1.1 MD10G1291100.v1.1 MD10G1291200.v1.1 MD10G1307900.v1.1 MD10G1308000.v1.1 MD10G1308200.v1.1 MD10G1308700.v1.1 MD17G1273200.v1.1
prunus_persica Prupe.4G031200_v2.0.a1 Prupe.4G031400_v2.0.a1 Prupe.4G031500_v2.0.a1 Prupe.4G031600_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.8G238600_v2.0.a1
pyrus_communis pycom02g22290 pycom02g22300 pycom05g30390 pycom05g30430 pycom05g30450 pycom05g30470 pycom05g30510 pycom05g30530 pycom05g30560 pycom05g30570 pycom10g24330 pycom10g25940 pycom10g25950 pycom10g25960 pycom10g25970 pycom10g25980 pycom10g25990 pycom10g26000 pycom10g26010 pycom10g26020 pycom10g26030 pycom17g27160
rosa_chinensis RchiOBHm_Chr2g0119951 RchiOBHm_Chr2g0119961 RchiOBHm_Chr2g0119981 RchiOBHm_Chr2g0120011 RchiOBHm_Chr2g0120061 RchiOBHm_Chr2g0120071 RchiOBHm_Chr3g0477341 RchiOBHm_Chr4g0411711 RchiOBHm_Chr4g0411831 RchiOBHm_Chr4g0411951 RchiOBHm_Chr5g0004871 RchiOBHm_Chr5g0004881 RchiOBHm_Chr5g0004891 RchiOBHm_Chr5g0004921 RchiOBHm_Chr5g0004931 RchiOBHm_Chr5g0004941 RchiOBHm_Chr5g0004961 RchiOBHm_Chr5g0004971 RchiOBHm_Chr5g0004991 RchiOBHm_Chr5g0005011 RchiOBHm_Chr5g0005031 RchiOBHm_Chr5g0005041 RchiOBHm_Chr5g0005051 RchiOBHm_Chr5g0034351 RchiOBHm_Chr5g0034371 RchiOBHm_Chr5g0035421 RchiOBHm_Chr5g0035471 RchiOBHm_Chr5g0035541 RchiOBHm_Chr5g0035551 RchiOBHm_Chr5g0035581 RchiOBHm_Chr5g0035651 RchiOBHm_Chr5g0035661 RchiOBHm_Chr5g0035791 RchiOBHm_Chr5g0035821 RchiOBHm_Chr5g0035881 RchiOBHm_Chr5g0035941 RchiOBHm_Chr5g0066181
rosa_laevigata RLG00000008339 RLG00000018505 RLG00000018510 RLG00000018738 RLG00000018741 RLG00000023265 RLG00000031268 RLG00000031270 RLG00000031272 RLG00000031274 RLG00000031275 RLG00000031278 RLG00000031280 RLG00000031281 RLG00000031282 RLG00000032920 RLG00000033622 RLG00000033628 RLG00000033641
rosa_multiflora Rmu_co8015890.1_g000001 Rmu_co8119476.1_g000001 Rmu_co8172744.1_g000001 Rmu_co8181302.1_g000001 Rmu_co8369629.1_g000001 Rmu_co8379407.1_g000001 Rmu_co8412887.1_g000001 Rmu_sc0000084.1_g000011 Rmu_sc0000084.1_g000012 Rmu_sc0000084.1_g000031 Rmu_sc0000593.1_g000007 Rmu_sc0000593.1_g000011 Rmu_sc0000593.1_g000014 Rmu_sc0000657.1_g000020 Rmu_sc0000711.1_g000010 Rmu_sc0000711.1_g000048 Rmu_sc0000813.1_g000017 Rmu_sc0001493.1_g000041 Rmu_sc0002935.1_g000014 Rmu_sc0002935.1_g000019 Rmu_sc0003096.1_g000002 Rmu_sc0003096.1_g000009 Rmu_sc0003096.1_g000010 Rmu_sc0003096.1_g000014 Rmu_sc0003541.1_g000052 Rmu_sc0004315.1_g000002 Rmu_sc0006173.1_g000007 Rmu_sc0006173.1_g000035 Rmu_sc0006369.1_g000003 Rmu_sc0007790.1_g000002 Rmu_sc0009702.1_g000001 Rmu_sc0009702.1_g000002 Rmu_sc0009702.1_g000004 Rmu_sc0009702.1_g000006 Rmu_sc0010714.1_g000001 Rmu_sc0010714.1_g000002 Rmu_sc0010714.1_g000007 Rmu_sc0010714.1_g000008 Rmu_sc0010714.1_g000009 Rmu_sc0011169.1_g000008 Rmu_sc0013877.1_g000001 Rmu_sc0013932.1_g000001 Rmu_sc0015231.1_g000005 Rmu_sc0016543.1_g000002 Rmu_sc0016543.1_g000003 Rmu_sc0017275.1_g000001 Rmu_sc0026861.1_g000001 Rmu_sc0030606.1_g000001
rosa_roxburghii Rroxscaffold_1G00044840 Rroxscaffold_1G00044850 Rroxscaffold_1G00044900 Rroxscaffold_1G00044980 Rroxscaffold_1G00044990 Rroxscaffold_1G00070600 Rroxscaffold_1G00070610 Rroxscaffold_1G00070630 Rroxscaffold_1G00070650 Rroxscaffold_1G00070680 Rroxscaffold_1G00070700 Rroxscaffold_1G00070710 Rroxscaffold_1G00070740 Rroxscaffold_1G00070750 Rroxscaffold_2G00123770 Rroxscaffold_2G00123820 Rroxscaffold_2G00123830 Rroxscaffold_2G00123900 Rroxscaffold_2G00123920 Rroxscaffold_4G00293110 Rroxscaffold_5G00353540 Rroxscaffold_5G00353620
rosa_rugosa Rorug01G0307800 Rorug02G0225800 Rorug02G0225900 Rorug04G0414800 Rorug04G0414800 Rorug04G0414800 Rorug04G0414900 Rorug04G0415000 Rorug05G0151600
rosa_samantha Rh3DG237000 Rh4BG166800 Rh5BG042300 Rh5CG045900 Rh5CG046000 Rh5CG046100 Rh5CG046200 Rh5CG046300 Rh5CG046400 Rh5CG046500 Rh5CG046600 Rh5CG046800 Rh5CG047000 Rh5CG047100 Rh5CG047300 Rh5CG047500 Rh5CG047600 Rh5CG267500 Rh5CG276200
rosa_wichuraiana Rw0G000290 Rw0G007740 Rw0G022180 Rw1G002050 Rw2G022580 Rw2G022600 Rw2G022620 Rw2G022650 Rw2G022660 Rw4G014100 Rw4G014220 Rw5G004100 Rw5G004110 Rw5G004120 Rw5G004130 Rw5G004140 Rw5G004160 Rw5G004170 Rw5G016790 Rw5G021680 Rw5G022380 Rw5G022450 Rw5G022470 Rw5G022490 Rw5G022540 Rw5G022570 Rw5G050160 Rw7G005200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 397, 408
AciI CCGC 5 cut(s) 141, 301, 395, 432, 437
AclI AACGTT 1 cut(s) 147
AcoI YGGCCR 1 cut(s) 177
AfaI GTAC 3 cut(s) 75, 127, 367
AfiI CCNNNNNNNGG 4 cut(s) 135, 356, 388, 448
AgeI ACCGGT 1 cut(s) 86
AloI GAACNNNNNNTCC 2 cut(s) 287, 319
Alw26I GTCTC 1 cut(s) 39
Ama87I CYCGRG 1 cut(s) 349
AoxI GGCC 3 cut(s) 97, 177, 438
ApeKI GCWGC 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 86
AspLEI GCGC 1 cut(s) 410
AspS9I GGNCC 5 cut(s) 118, 138, 303, 439, 446
AsuC2I CCSGG 4 cut(s) 31, 307, 358, 450
AsuHPI GGTGA 3 cut(s) 76, 101, 153
AvaI CYCGRG 1 cut(s) 349
AvaII GGWCC 4 cut(s) 118, 138, 303, 446
BaeI ACNNNNGTAYC 2 cut(s) 109, 142
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 192
BciVI GTATCC 2 cut(s) 184, 256
BcnI CCSGG 4 cut(s) 31, 307, 358, 450
BcoDI GTCTC 1 cut(s) 39
BfuI GTATCC 2 cut(s) 184, 256
BisI GCNGC 2 cut(s) 6, 438
BlsI GCNGC 2 cut(s) 7, 439
BmcAI AGTACT 1 cut(s) 75
Bme1390I CCNGG 4 cut(s) 31, 307, 358, 450
Bme18I GGWCC 4 cut(s) 118, 138, 303, 446
BmeT110I CYCGRG 1 cut(s) 349
BmgT120I GGNCC 5 cut(s) 118, 138, 303, 439, 446
BmiI GGNNCC 2 cut(s) 120, 393
BmrFI CCNGG 4 cut(s) 31, 307, 358, 450
BpuEI CTTGAG 1 cut(s) 233
BpuMI CCSGG 4 cut(s) 31, 307, 358, 450
Bsa29I ATCGAT 1 cut(s) 80
BsaJI CCNNGG 4 cut(s) 67, 258, 442, 449
BsaWI WCCGGW 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 4 cut(s) 135, 356, 388, 448
Bse118I RCCGGY 2 cut(s) 86, 297
BseCI ATCGAT 1 cut(s) 80
BseDI CCNNGG 4 cut(s) 67, 258, 442, 449
BseLI CCNNNNNNNGG 4 cut(s) 135, 356, 388, 448
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 2 cut(s) 397, 408
BshFI GGCC 3 cut(s) 99, 179, 440
BshTI ACCGGT 1 cut(s) 86
BshVI ATCGAT 1 cut(s) 80
BsiHKCI CYCGRG 1 cut(s) 349
BsiSI CCGG 6 cut(s) 30, 87, 298, 306, 357, 449
BslI CCNNNNNNNGG 4 cut(s) 135, 356, 388, 448
BsmAI GTCTC 1 cut(s) 39
BsnI GGCC 3 cut(s) 99, 179, 440
BsoBI CYCGRG 1 cut(s) 349
Bsp1407I TGTACA 1 cut(s) 365
Bsp143I GATC 2 cut(s) 54, 81
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 5 cut(s) 141, 301, 395, 432, 437
BspANI GGCC 3 cut(s) 99, 179, 440
BspDI ATCGAT 1 cut(s) 80
BspFNI CGCG 2 cut(s) 397, 408
BspLI GGNNCC 2 cut(s) 120, 393
BsrFI RCCGGY 2 cut(s) 86, 297
BsrGI TGTACA 1 cut(s) 365
BssAI RCCGGY 2 cut(s) 86, 297
BssECI CCNNGG 4 cut(s) 67, 258, 442, 449
BssMI GATC 2 cut(s) 54, 81
BssT1I CCWWGG 2 cut(s) 67, 442
Bst6I CTCTTC 1 cut(s) 163
BstAUI TGTACA 1 cut(s) 365
BstDSI CCRYGG 1 cut(s) 67
BstFNI CGCG 2 cut(s) 397, 408
BstHHI GCGC 1 cut(s) 410
BstKTI GATC 2 cut(s) 57, 84
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 2 cut(s) 54, 81
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstSCI CCNGG 4 cut(s) 29, 305, 356, 448
BstUI CGCG 2 cut(s) 397, 408
BstV1I GCAGC 1 cut(s) 17
BstXI CCANNNNNNTGG 1 cut(s) 187
Bsu15I ATCGAT 1 cut(s) 80
BsuI GTATCC 2 cut(s) 184, 256
BsuRI GGCC 3 cut(s) 99, 179, 440
BsuTUI ATCGAT 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 266
CfoI GCGC 1 cut(s) 410
Cfr10I RCCGGY 2 cut(s) 86, 297
Cfr13I GGNCC 5 cut(s) 118, 138, 303, 439, 446
ClaI ATCGAT 1 cut(s) 80
CpoI CGGWCCG 1 cut(s) 303
Csp6I GTAC 3 cut(s) 74, 126, 366
CspAI ACCGGT 1 cut(s) 86
CspI CGGWCCG 1 cut(s) 303
CviAII CATG 3 cut(s) 68, 110, 411
CviJI RGCY 6 cut(s) 99, 179, 225, 246, 292, 440
CviKI_1 RGCY 6 cut(s) 99, 179, 225, 246, 292, 440
CviQI GTAC 3 cut(s) 74, 126, 366
DpnI GATC 2 cut(s) 56, 83
DpnII GATC 2 cut(s) 54, 81
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
Eco130I CCWWGG 2 cut(s) 67, 442
Eco147I AGGCCT 1 cut(s) 99
Eco47I GGWCC 4 cut(s) 118, 138, 303, 446
Eco88I CYCGRG 1 cut(s) 349
EcoO109I RGGNCCY 1 cut(s) 118
EcoT14I CCWWGG 2 cut(s) 67, 442
ErhI CCWWGG 2 cut(s) 67, 442
FaeI CATG 3 cut(s) 71, 113, 414
FaiI YATR 8 cut(s) 10, 12, 23, 69, 107, 111, 281, 412
FatI CATG 3 cut(s) 67, 109, 410
FauI CCCGC 1 cut(s) 425
FauNDI CATATG 1 cut(s) 10
Fnu4HI GCNGC 2 cut(s) 6, 438
Fsp4HI GCNGC 2 cut(s) 6, 438
GlaI GCGC 1 cut(s) 409
GluI GCNGC 2 cut(s) 6, 438
HaeIII GGCC 3 cut(s) 99, 179, 440
HapII CCGG 6 cut(s) 30, 87, 298, 306, 357, 449
HhaI GCGC 1 cut(s) 410
Hin1II CATG 3 cut(s) 71, 113, 414
Hin6I GCGC 1 cut(s) 408
HinP1I GCGC 1 cut(s) 408
HpaII CCGG 6 cut(s) 30, 87, 298, 306, 357, 449
HphI GGTGA 3 cut(s) 76, 101, 153
Hpy188I TCNGA 1 cut(s) 262
HpyAV CCTTC 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 3 cut(s) 71, 113, 414
HspAI GCGC 1 cut(s) 408
Kzo9I GATC 2 cut(s) 54, 81
LpnPI CCDG 7 cut(s) 43, 100, 180, 188, 311, 319, 370
Lsp1109I GCAGC 1 cut(s) 17
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 148
MalI GATC 2 cut(s) 56, 83
MboI GATC 2 cut(s) 54, 81
MboII GAAGA 3 cut(s) 150, 295, 433
MluCI AATT 2 cut(s) 169, 424
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 3 cut(s) 89, 141, 268
MspI CCGG 6 cut(s) 30, 87, 298, 306, 357, 449
MspR9I CCNGG 4 cut(s) 31, 307, 358, 450
MvnI CGCG 2 cut(s) 397, 408
MwoI GCNNNNNNNGC 1 cut(s) 298
NciI CCSGG 4 cut(s) 31, 307, 358, 450
NcoI CCATGG 1 cut(s) 67
NdeI CATATG 1 cut(s) 10
NdeII GATC 2 cut(s) 54, 81
NlaIII CATG 3 cut(s) 71, 113, 414
NlaIV GGNNCC 2 cut(s) 120, 393
PceI AGGCCT 1 cut(s) 99
PinAI ACCGGT 1 cut(s) 86
PkrI GCNGC 2 cut(s) 7, 439
PpuMI RGGWCCY 1 cut(s) 118
Psp1406I AACGTT 1 cut(s) 147
Psp5II RGGWCCY 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 120, 393
PspPI GGNCC 5 cut(s) 118, 138, 303, 439, 446
PspPPI RGGWCCY 1 cut(s) 118
RsaI GTAC 3 cut(s) 75, 127, 367
RsaNI GTAC 3 cut(s) 74, 126, 366
Rsr2I CGGWCCG 1 cut(s) 303
RsrII CGGWCCG 1 cut(s) 303
SatI GCNGC 2 cut(s) 6, 438
Sau3AI GATC 2 cut(s) 54, 81
Sau96I GGNCC 5 cut(s) 118, 138, 303, 439, 446
ScaI AGTACT 1 cut(s) 75
ScrFI CCNGG 4 cut(s) 31, 307, 358, 450
SetI ASST 2 cut(s) 150, 324
SgrAI CRCCGGYG 1 cut(s) 86
SinI GGWCC 4 cut(s) 118, 138, 303, 446
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 2 cut(s) 169, 424
SseBI AGGCCT 1 cut(s) 99
SsiI CCGC 5 cut(s) 141, 301, 395, 432, 437
StuI AGGCCT 1 cut(s) 99
StyD4I CCNGG 4 cut(s) 29, 305, 356, 448
StyI CCWWGG 2 cut(s) 67, 442
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 80
TasI AATT 2 cut(s) 169, 424
TatI WGTACW 2 cut(s) 73, 365
TauI GCSGC 1 cut(s) 440
TscAI CASTG 1 cut(s) 273
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 27, 296
TspRI CASTG 1 cut(s) 273
VpaK11BI GGWCC 4 cut(s) 118, 138, 303, 446
ZrmI AGTACT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.