Rh5CG046200

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
3229217 .. 3229558
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG046200.1

Sequence Viewer

Length: 342 bp
ATGTGTGGAAAGGGAGATGGGTTTGTGAAAATGTCACACGTAAATATACCGGAGTCATCTAAGGCACTTGTAAACATGAACTTGAGCTTGAAAGAGTGCAAGCAAGAGTGCTTGAAAAATTGTTCTTGCACTGCATACTCAACTGCGAATGGAAAATCTGAGGGTGGATGCTTGACATGGTATGGGGACTTGATGGACATAAGGACGTTTGCAAATGTTGGTCAAGAATTGTATTTACGCGTTGACGCAAATGTCTTGGGTATGTATTCGTTTTCCACTCTCTTTCTTCTCTTAAATTTATCGTTACCACATGTTCCTAGTAACGCATATGCCATATTTTAA

Protein Analysis

113

Amino Acids

12.4

Weight (kDa)

6.69

Isoelectric Point (pI)

52.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 2 - 67 4.9e-22 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000099)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11340 AT1G11340 AT1G11340 AT1G11410 AT1G11410 AT1G11410 AT1G11410
fragaria_vesca FvH4_3g03230 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03241 FvH4_3g03242 FvH4_3g03243 FvH4_3g03300 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03310 FvH4_3g03310 FvH4_6g07960
malus_domestica MD00G1203200.v1.1 MD02G1260900.v1.1 MD05G1263100.v1.1 MD05G1332300.v1.1 MD05G1332400.v1.1 MD05G1332600.v1.1 MD05G1332700.v1.1 MD05G1333400.v1.1 MD05G1333500.v1.1 MD05G1333700.v1.1 MD05G1334000.v1.1 MD10G1291100.v1.1 MD10G1291200.v1.1 MD10G1307900.v1.1 MD10G1308000.v1.1 MD10G1308200.v1.1 MD10G1308700.v1.1 MD17G1273200.v1.1
prunus_persica Prupe.4G031200_v2.0.a1 Prupe.4G031400_v2.0.a1 Prupe.4G031500_v2.0.a1 Prupe.4G031600_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.8G238600_v2.0.a1
pyrus_communis pycom02g22290 pycom02g22300 pycom05g30390 pycom05g30430 pycom05g30450 pycom05g30470 pycom05g30510 pycom05g30530 pycom05g30560 pycom05g30570 pycom10g24330 pycom10g25940 pycom10g25950 pycom10g25960 pycom10g25970 pycom10g25980 pycom10g25990 pycom10g26000 pycom10g26010 pycom10g26020 pycom10g26030 pycom17g27160
rosa_chinensis RchiOBHm_Chr2g0119951 RchiOBHm_Chr2g0119961 RchiOBHm_Chr2g0119981 RchiOBHm_Chr2g0120011 RchiOBHm_Chr2g0120061 RchiOBHm_Chr2g0120071 RchiOBHm_Chr3g0477341 RchiOBHm_Chr4g0411711 RchiOBHm_Chr4g0411831 RchiOBHm_Chr4g0411951 RchiOBHm_Chr5g0004871 RchiOBHm_Chr5g0004881 RchiOBHm_Chr5g0004891 RchiOBHm_Chr5g0004921 RchiOBHm_Chr5g0004931 RchiOBHm_Chr5g0004941 RchiOBHm_Chr5g0004961 RchiOBHm_Chr5g0004971 RchiOBHm_Chr5g0004991 RchiOBHm_Chr5g0005011 RchiOBHm_Chr5g0005031 RchiOBHm_Chr5g0005041 RchiOBHm_Chr5g0005051 RchiOBHm_Chr5g0034351 RchiOBHm_Chr5g0034371 RchiOBHm_Chr5g0035421 RchiOBHm_Chr5g0035471 RchiOBHm_Chr5g0035541 RchiOBHm_Chr5g0035551 RchiOBHm_Chr5g0035581 RchiOBHm_Chr5g0035651 RchiOBHm_Chr5g0035661 RchiOBHm_Chr5g0035791 RchiOBHm_Chr5g0035821 RchiOBHm_Chr5g0035881 RchiOBHm_Chr5g0035941 RchiOBHm_Chr5g0066181
rosa_laevigata RLG00000008339 RLG00000018505 RLG00000018510 RLG00000018738 RLG00000018741 RLG00000023265 RLG00000031268 RLG00000031270 RLG00000031272 RLG00000031274 RLG00000031275 RLG00000031278 RLG00000031280 RLG00000031281 RLG00000031282 RLG00000032920 RLG00000033622 RLG00000033628 RLG00000033641
rosa_multiflora Rmu_co8015890.1_g000001 Rmu_co8119476.1_g000001 Rmu_co8172744.1_g000001 Rmu_co8181302.1_g000001 Rmu_co8369629.1_g000001 Rmu_co8379407.1_g000001 Rmu_co8412887.1_g000001 Rmu_sc0000084.1_g000011 Rmu_sc0000084.1_g000012 Rmu_sc0000084.1_g000031 Rmu_sc0000593.1_g000007 Rmu_sc0000593.1_g000011 Rmu_sc0000593.1_g000014 Rmu_sc0000657.1_g000020 Rmu_sc0000711.1_g000010 Rmu_sc0000711.1_g000048 Rmu_sc0000813.1_g000017 Rmu_sc0001493.1_g000041 Rmu_sc0002935.1_g000014 Rmu_sc0002935.1_g000019 Rmu_sc0003096.1_g000002 Rmu_sc0003096.1_g000009 Rmu_sc0003096.1_g000010 Rmu_sc0003096.1_g000014 Rmu_sc0003541.1_g000052 Rmu_sc0004315.1_g000002 Rmu_sc0006173.1_g000007 Rmu_sc0006173.1_g000035 Rmu_sc0006369.1_g000003 Rmu_sc0007790.1_g000002 Rmu_sc0009702.1_g000001 Rmu_sc0009702.1_g000002 Rmu_sc0009702.1_g000004 Rmu_sc0009702.1_g000006 Rmu_sc0010714.1_g000001 Rmu_sc0010714.1_g000002 Rmu_sc0010714.1_g000007 Rmu_sc0010714.1_g000008 Rmu_sc0010714.1_g000009 Rmu_sc0011169.1_g000008 Rmu_sc0013877.1_g000001 Rmu_sc0013932.1_g000001 Rmu_sc0015231.1_g000005 Rmu_sc0016543.1_g000002 Rmu_sc0016543.1_g000003 Rmu_sc0017275.1_g000001 Rmu_sc0026861.1_g000001 Rmu_sc0030606.1_g000001
rosa_roxburghii Rroxscaffold_1G00044840 Rroxscaffold_1G00044850 Rroxscaffold_1G00044900 Rroxscaffold_1G00044980 Rroxscaffold_1G00044990 Rroxscaffold_1G00070600 Rroxscaffold_1G00070610 Rroxscaffold_1G00070630 Rroxscaffold_1G00070650 Rroxscaffold_1G00070680 Rroxscaffold_1G00070700 Rroxscaffold_1G00070710 Rroxscaffold_1G00070740 Rroxscaffold_1G00070750 Rroxscaffold_2G00123770 Rroxscaffold_2G00123820 Rroxscaffold_2G00123830 Rroxscaffold_2G00123900 Rroxscaffold_2G00123920 Rroxscaffold_4G00293110 Rroxscaffold_5G00353540 Rroxscaffold_5G00353620
rosa_rugosa Rorug01G0307800 Rorug02G0225800 Rorug02G0225900 Rorug04G0414800 Rorug04G0414800 Rorug04G0414800 Rorug04G0414900 Rorug04G0415000 Rorug05G0151600
rosa_samantha Rh3DG237000 Rh4BG166800 Rh5BG042300 Rh5CG045900 Rh5CG046000 Rh5CG046100 Rh5CG046200 Rh5CG046300 Rh5CG046400 Rh5CG046500 Rh5CG046600 Rh5CG046800 Rh5CG047000 Rh5CG047100 Rh5CG047300 Rh5CG047500 Rh5CG047600 Rh5CG267500 Rh5CG276200
rosa_wichuraiana Rw0G000290 Rw0G007740 Rw0G022180 Rw1G002050 Rw2G022580 Rw2G022600 Rw2G022620 Rw2G022650 Rw2G022660 Rw4G014100 Rw4G014220 Rw5G004100 Rw5G004110 Rw5G004120 Rw5G004130 Rw5G004140 Rw5G004160 Rw5G004170 Rw5G016790 Rw5G021680 Rw5G022380 Rw5G022450 Rw5G022470 Rw5G022490 Rw5G022540 Rw5G022570 Rw5G050160 Rw7G005200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AccII CGCG 1 cut(s) 240
AcsI RAATTY 1 cut(s) 295
AflIII ACRYGT 3 cut(s) 37, 238, 310
AgsI TTSAA 2 cut(s) 91, 115
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
ApoI RAATTY 1 cut(s) 295
BccI CCATC 2 cut(s) 11, 187
BfaI CTAG 1 cut(s) 318
BmsI GCATC 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 103
BsaAI YACGTR 1 cut(s) 40
BsaWI WCCGGW 1 cut(s) 49
BseGI GGATG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 240
BsiSI CCGG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 200
BspCNI CTCAG 1 cut(s) 151
BspFNI CGCG 1 cut(s) 240
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 60, 159
BstF5I GGATG 1 cut(s) 173
BstFNI CGCG 1 cut(s) 240
BstNSI RCATGY 1 cut(s) 314
BstUI CGCG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 173
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 101
CseI GACGC 1 cut(s) 254
CviAII CATG 3 cut(s) 76, 177, 311
CviJI RGCY 1 cut(s) 87
CviKI_1 RGCY 1 cut(s) 87
DdeI CTNAG 2 cut(s) 60, 159
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
FaeI CATG 3 cut(s) 79, 180, 314
FaqI GGGAC 1 cut(s) 200
FatI CATG 3 cut(s) 75, 176, 310
FauNDI CATATG 1 cut(s) 328
FokI GGATG 1 cut(s) 180
FspBI CTAG 1 cut(s) 318
HapII CCGG 1 cut(s) 50
HgaI GACGC 1 cut(s) 254
Hin1II CATG 3 cut(s) 79, 180, 314
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 1 cut(s) 53
HpaII CCGG 1 cut(s) 50
Hpy166II GTNNAC 2 cut(s) 73, 244
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 2 cut(s) 73, 244
HpyCH4IV ACGT 2 cut(s) 39, 206
HpyCH4V TGCA 4 cut(s) 99, 129, 134, 212
HpyF3I CTNAG 2 cut(s) 60, 159
HpySE526I ACGT 2 cut(s) 39, 206
Hsp92II CATG 3 cut(s) 79, 180, 314
LpnPI CCDG 1 cut(s) 63
LweI GCATC 1 cut(s) 158
MaeI CTAG 1 cut(s) 318
MaeII ACGT 2 cut(s) 39, 206
MaeIII GTNAC 3 cut(s) 33, 303, 320
MboII GAAGA 1 cut(s) 278
MluCI AATT 3 cut(s) 118, 227, 295
MluI ACGCGT 1 cut(s) 238
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 1 cut(s) 154
MseI TTAA 2 cut(s) 293, 340
MspI CCGG 1 cut(s) 50
MvnI CGCG 1 cut(s) 240
NdeI CATATG 1 cut(s) 328
NlaIII CATG 3 cut(s) 79, 180, 314
NmuCI GTSAC 1 cut(s) 33
NspI RCATGY 1 cut(s) 314
PciI ACATGT 1 cut(s) 310
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Ppu21I YACGTR 1 cut(s) 40
PscI ACATGT 1 cut(s) 310
SaqAI TTAA 2 cut(s) 293, 340
SchI GAGTC 1 cut(s) 62
SetI ASST 3 cut(s) 42, 89, 209
SfaNI GCATC 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse9I AATT 3 cut(s) 118, 227, 295
SspMI CTAG 1 cut(s) 318
TaiI ACGT 2 cut(s) 42, 209
TasI AATT 3 cut(s) 118, 227, 295
Tru1I TTAA 2 cut(s) 293, 340
Tru9I TTAA 2 cut(s) 293, 340
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 1 cut(s) 33
Tsp45I GTSAC 1 cut(s) 33
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 1 cut(s) 136
XapI RAATTY 1 cut(s) 295
XceI RCATGY 1 cut(s) 314
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.