Rh5CG047000

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
3324070 .. 3324744
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG047000.1

Sequence Viewer

Length: 675 bp
ATGTTGTACAACAATCATGCTAAATGGTGGCGGTTAAGTGAACGCGATGTAGTTTTTGTGAGTGAGTCACCTAAGATAAGCAGGCGAAGCAGCAATGATACATTTGACATAATTCTTGTGAAGAATGAAGATGAGATTACGACGACATGGGCTGTTCATGACCATTCGGTTTTCTCAATAATAGTGATATCTGGGTCTGATACATCCGCATCAGTTAAACAGCTAGCATGGCAGGGGAAGCAGCTGGGGTGGGTTGTCGATTGGTCAGCACCAACGAATGTCTGTGACAAGTATGGTACTACATGTGGCCCATTTGGAGTTTGCAATACACACACAGCTAACTGGGTGAAATGTGCATGCTTTCCTGGATACGAACCCAACTTCCCACAGGATTGGAAATTAAGAGAAGGGTCAGGTGGGTGCAAGAGGCAACAGGGGGCTCCATCCATGTGTAGGAACGGTGAGGGGTTTGTAAGGATGGACAATGTGAATGTTCCAGTTACTTCCACAGTCGAAGTGGACAAGAATATGAGTATGGAAGCATGTGAGCAGAAGTGTTTGAGTAACTGCTCTTGCCTGGCATATGCCAGTGCAGATATCAGAAATGGAAGAAGTGGATGTATGACCTGGTATGGAGATTTAATGGATACTAAGCAGTATATTGAACGACAATGA

Protein Analysis

224

Amino Acids

25.15

Weight (kDa)

6.09

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 32 - 127 8.9e-17 S-locus glycoprotein domain
PAN_2 PF08276 151 - 217 9e-22 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000099)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11340 AT1G11340 AT1G11340 AT1G11410 AT1G11410 AT1G11410 AT1G11410
fragaria_vesca FvH4_3g03230 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03241 FvH4_3g03242 FvH4_3g03243 FvH4_3g03300 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03310 FvH4_3g03310 FvH4_6g07960
malus_domestica MD00G1203200.v1.1 MD02G1260900.v1.1 MD05G1263100.v1.1 MD05G1332300.v1.1 MD05G1332400.v1.1 MD05G1332600.v1.1 MD05G1332700.v1.1 MD05G1333400.v1.1 MD05G1333500.v1.1 MD05G1333700.v1.1 MD05G1334000.v1.1 MD10G1291100.v1.1 MD10G1291200.v1.1 MD10G1307900.v1.1 MD10G1308000.v1.1 MD10G1308200.v1.1 MD10G1308700.v1.1 MD17G1273200.v1.1
prunus_persica Prupe.4G031200_v2.0.a1 Prupe.4G031400_v2.0.a1 Prupe.4G031500_v2.0.a1 Prupe.4G031600_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.8G238600_v2.0.a1
pyrus_communis pycom02g22290 pycom02g22300 pycom05g30390 pycom05g30430 pycom05g30450 pycom05g30470 pycom05g30510 pycom05g30530 pycom05g30560 pycom05g30570 pycom10g24330 pycom10g25940 pycom10g25950 pycom10g25960 pycom10g25970 pycom10g25980 pycom10g25990 pycom10g26000 pycom10g26010 pycom10g26020 pycom10g26030 pycom17g27160
rosa_chinensis RchiOBHm_Chr2g0119951 RchiOBHm_Chr2g0119961 RchiOBHm_Chr2g0119981 RchiOBHm_Chr2g0120011 RchiOBHm_Chr2g0120061 RchiOBHm_Chr2g0120071 RchiOBHm_Chr3g0477341 RchiOBHm_Chr4g0411711 RchiOBHm_Chr4g0411831 RchiOBHm_Chr4g0411951 RchiOBHm_Chr5g0004871 RchiOBHm_Chr5g0004881 RchiOBHm_Chr5g0004891 RchiOBHm_Chr5g0004921 RchiOBHm_Chr5g0004931 RchiOBHm_Chr5g0004941 RchiOBHm_Chr5g0004961 RchiOBHm_Chr5g0004971 RchiOBHm_Chr5g0004991 RchiOBHm_Chr5g0005011 RchiOBHm_Chr5g0005031 RchiOBHm_Chr5g0005041 RchiOBHm_Chr5g0005051 RchiOBHm_Chr5g0034351 RchiOBHm_Chr5g0034371 RchiOBHm_Chr5g0035421 RchiOBHm_Chr5g0035471 RchiOBHm_Chr5g0035541 RchiOBHm_Chr5g0035551 RchiOBHm_Chr5g0035581 RchiOBHm_Chr5g0035651 RchiOBHm_Chr5g0035661 RchiOBHm_Chr5g0035791 RchiOBHm_Chr5g0035821 RchiOBHm_Chr5g0035881 RchiOBHm_Chr5g0035941 RchiOBHm_Chr5g0066181
rosa_laevigata RLG00000008339 RLG00000018505 RLG00000018510 RLG00000018738 RLG00000018741 RLG00000023265 RLG00000031268 RLG00000031270 RLG00000031272 RLG00000031274 RLG00000031275 RLG00000031278 RLG00000031280 RLG00000031281 RLG00000031282 RLG00000032920 RLG00000033622 RLG00000033628 RLG00000033641
rosa_multiflora Rmu_co8015890.1_g000001 Rmu_co8119476.1_g000001 Rmu_co8172744.1_g000001 Rmu_co8181302.1_g000001 Rmu_co8369629.1_g000001 Rmu_co8379407.1_g000001 Rmu_co8412887.1_g000001 Rmu_sc0000084.1_g000011 Rmu_sc0000084.1_g000012 Rmu_sc0000084.1_g000031 Rmu_sc0000593.1_g000007 Rmu_sc0000593.1_g000011 Rmu_sc0000593.1_g000014 Rmu_sc0000657.1_g000020 Rmu_sc0000711.1_g000010 Rmu_sc0000711.1_g000048 Rmu_sc0000813.1_g000017 Rmu_sc0001493.1_g000041 Rmu_sc0002935.1_g000014 Rmu_sc0002935.1_g000019 Rmu_sc0003096.1_g000002 Rmu_sc0003096.1_g000009 Rmu_sc0003096.1_g000010 Rmu_sc0003096.1_g000014 Rmu_sc0003541.1_g000052 Rmu_sc0004315.1_g000002 Rmu_sc0006173.1_g000007 Rmu_sc0006173.1_g000035 Rmu_sc0006369.1_g000003 Rmu_sc0007790.1_g000002 Rmu_sc0009702.1_g000001 Rmu_sc0009702.1_g000002 Rmu_sc0009702.1_g000004 Rmu_sc0009702.1_g000006 Rmu_sc0010714.1_g000001 Rmu_sc0010714.1_g000002 Rmu_sc0010714.1_g000007 Rmu_sc0010714.1_g000008 Rmu_sc0010714.1_g000009 Rmu_sc0011169.1_g000008 Rmu_sc0013877.1_g000001 Rmu_sc0013932.1_g000001 Rmu_sc0015231.1_g000005 Rmu_sc0016543.1_g000002 Rmu_sc0016543.1_g000003 Rmu_sc0017275.1_g000001 Rmu_sc0026861.1_g000001 Rmu_sc0030606.1_g000001
rosa_roxburghii Rroxscaffold_1G00044840 Rroxscaffold_1G00044850 Rroxscaffold_1G00044900 Rroxscaffold_1G00044980 Rroxscaffold_1G00044990 Rroxscaffold_1G00070600 Rroxscaffold_1G00070610 Rroxscaffold_1G00070630 Rroxscaffold_1G00070650 Rroxscaffold_1G00070680 Rroxscaffold_1G00070700 Rroxscaffold_1G00070710 Rroxscaffold_1G00070740 Rroxscaffold_1G00070750 Rroxscaffold_2G00123770 Rroxscaffold_2G00123820 Rroxscaffold_2G00123830 Rroxscaffold_2G00123900 Rroxscaffold_2G00123920 Rroxscaffold_4G00293110 Rroxscaffold_5G00353540 Rroxscaffold_5G00353620
rosa_rugosa Rorug01G0307800 Rorug02G0225800 Rorug02G0225900 Rorug04G0414800 Rorug04G0414800 Rorug04G0414800 Rorug04G0414900 Rorug04G0415000 Rorug05G0151600
rosa_samantha Rh3DG237000 Rh4BG166800 Rh5BG042300 Rh5CG045900 Rh5CG046000 Rh5CG046100 Rh5CG046200 Rh5CG046300 Rh5CG046400 Rh5CG046500 Rh5CG046600 Rh5CG046800 Rh5CG047000 Rh5CG047100 Rh5CG047300 Rh5CG047500 Rh5CG047600 Rh5CG267500 Rh5CG276200
rosa_wichuraiana Rw0G000290 Rw0G007740 Rw0G022180 Rw1G002050 Rw2G022580 Rw2G022600 Rw2G022620 Rw2G022650 Rw2G022660 Rw4G014100 Rw4G014220 Rw5G004100 Rw5G004110 Rw5G004120 Rw5G004130 Rw5G004140 Rw5G004160 Rw5G004170 Rw5G016790 Rw5G021680 Rw5G022380 Rw5G022450 Rw5G022470 Rw5G022490 Rw5G022540 Rw5G022570 Rw5G050160 Rw7G005200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 45
AciI CCGC 2 cut(s) 31, 207
AfaI GTAC 2 cut(s) 8, 298
AfiI CCNNNNNNNGG 1 cut(s) 453
AflIII ACRYGT 1 cut(s) 302
AgsI TTSAA 1 cut(s) 665
AjnI CCWGG 3 cut(s) 364, 576, 626
AloI GAACNNNNNNTCC 2 cut(s) 366, 398
AluBI AGCT 3 cut(s) 223, 244, 338
AluI AGCT 3 cut(s) 223, 244, 338
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 2 cut(s) 90, 241
AspS9I GGNCC 1 cut(s) 308
AsuHPI GGTGA 3 cut(s) 60, 358, 473
AsuNHI GCTAGC 1 cut(s) 223
BanII GRGCYC 1 cut(s) 442
BbvI GCAGC 2 cut(s) 102, 253
BccI CCATC 2 cut(s) 451, 472
BciT130I CCWGG 3 cut(s) 366, 578, 628
BciVI GTATCC 2 cut(s) 362, 640
BfaI CTAG 1 cut(s) 224
BfuI GTATCC 2 cut(s) 362, 640
BisI GCNGC 2 cut(s) 91, 242
BlsI GCNGC 2 cut(s) 92, 243
Bme1390I CCNGG 3 cut(s) 366, 578, 628
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 1 cut(s) 441
BmrFI CCNGG 3 cut(s) 366, 578, 628
BmrI ACTGGG 1 cut(s) 352
BmsI GCATC 1 cut(s) 218
BmtI GCTAGC 1 cut(s) 227
BmuI ACTGGG 1 cut(s) 352
Bsc4I CCNNNNNNNGG 1 cut(s) 453
Bse1I ACTGG 3 cut(s) 347, 497, 588
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 3 cut(s) 366, 578, 628
BseGI GGATG 4 cut(s) 203, 443, 483, 623
BseLI CCNNNNNNNGG 1 cut(s) 453
BseMI GCAATG 1 cut(s) 100
BseNI ACTGG 3 cut(s) 347, 497, 588
BseXI GCAGC 2 cut(s) 102, 253
BseYI CCCAGC 1 cut(s) 244
BsgI GTGCAG 1 cut(s) 612
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 453
BsnI GGCC 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 442
Bsp1407I TGTACA 1 cut(s) 6
BspACI CCGC 2 cut(s) 31, 207
BspANI GGCC 1 cut(s) 309
BspFNI CGCG 1 cut(s) 45
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 441
BspOI GCTAGC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 100
BsrGI TGTACA 1 cut(s) 6
BsrI ACTGG 3 cut(s) 347, 497, 588
Bst2UI CCWGG 3 cut(s) 366, 578, 628
Bst4CI ACNGT 2 cut(s) 461, 511
BstAUI TGTACA 1 cut(s) 6
BstC8I GCNNGC 3 cut(s) 83, 225, 358
BstDEI CTNAG 2 cut(s) 72, 651
BstF5I GGATG 4 cut(s) 203, 443, 483, 623
BstFNI CGCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 3 cut(s) 87, 229, 238
BstNI CCWGG 3 cut(s) 366, 578, 628
BstNSI RCATGY 3 cut(s) 306, 360, 546
BstSCI CCNGG 3 cut(s) 364, 576, 626
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 2 cut(s) 102, 253
BstXI CCANNNNNNTGG 1 cut(s) 393
BsuI GTATCC 2 cut(s) 362, 640
BsuRI GGCC 1 cut(s) 309
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 4 cut(s) 203, 443, 483, 623
BtsIMutI CAGTG 1 cut(s) 595
Cac8I GCNNGC 3 cut(s) 83, 225, 358
CciI TCATGA 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 308
CsiI ACCWGGT 1 cut(s) 626
Csp6I GTAC 2 cut(s) 7, 297
CviAII CATG 8 cut(s) 17, 147, 158, 228, 303, 357, 448, 543
CviJI RGCY 6 cut(s) 152, 223, 244, 309, 338, 440
CviKI_1 RGCY 6 cut(s) 152, 223, 244, 309, 338, 440
CviQI GTAC 2 cut(s) 7, 297
DdeI CTNAG 2 cut(s) 72, 651
Eco24I GRGCYC 1 cut(s) 442
Eco32I GATATC 2 cut(s) 189, 598
EcoRII CCWGG 3 cut(s) 364, 576, 626
EcoRV GATATC 2 cut(s) 189, 598
EcoT38I GRGCYC 1 cut(s) 442
FaeI CATG 8 cut(s) 20, 150, 161, 231, 306, 360, 451, 546
FatI CATG 8 cut(s) 16, 146, 157, 227, 302, 356, 447, 542
FauNDI CATATG 1 cut(s) 583
Fnu4HI GCNGC 2 cut(s) 91, 242
FokI GGATG 4 cut(s) 190, 430, 490, 630
FriOI GRGCYC 1 cut(s) 442
Fsp4HI GCNGC 2 cut(s) 91, 242
FspBI CTAG 1 cut(s) 224
GluI GCNGC 2 cut(s) 91, 242
GsaI CCCAGC 1 cut(s) 248
HaeIII GGCC 1 cut(s) 309
Hin1II CATG 8 cut(s) 20, 150, 161, 231, 306, 360, 451, 546
HinfI GANTC 1 cut(s) 65
HphI GGTGA 3 cut(s) 60, 358, 473
Hpy166II GTNNAC 2 cut(s) 41, 520
Hpy188I TCNGA 2 cut(s) 199, 602
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 2 cut(s) 41, 520
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 2 cut(s) 461, 511
HpyCH4V TGCA 4 cut(s) 324, 356, 423, 593
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 229, 238
HpyF3I CTNAG 2 cut(s) 72, 651
Hsp92II CATG 8 cut(s) 20, 150, 161, 231, 306, 360, 451, 546
LmnI GCTCC 1 cut(s) 445
Lsp1109I GCAGC 2 cut(s) 102, 253
LweI GCATC 1 cut(s) 218
MabI ACCWGGT 1 cut(s) 626
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 4 cut(s) 66, 284, 499, 563
MboII GAAGA 3 cut(s) 133, 140, 621
MhlI GDGCHC 1 cut(s) 442
MluCI AATT 2 cut(s) 111, 398
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 2 cut(s) 420, 457
MseI TTAA 4 cut(s) 35, 216, 401, 641
MslI CAYNNNNRTG 1 cut(s) 448
MspA1I CMGCKG 1 cut(s) 244
MspR9I CCNGG 3 cut(s) 366, 578, 628
MvaI CCWGG 3 cut(s) 366, 578, 628
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 87, 229, 238
NdeI CATATG 1 cut(s) 583
NheI GCTAGC 1 cut(s) 223
NlaIII CATG 8 cut(s) 20, 150, 161, 231, 306, 360, 451, 546
NlaIV GGNNCC 1 cut(s) 441
NmuCI GTSAC 2 cut(s) 66, 284
NspI RCATGY 3 cut(s) 306, 360, 546
PaeI GCATGC 1 cut(s) 360
PagI TCATGA 1 cut(s) 157
PciI ACATGT 1 cut(s) 302
PfoI TCCNGGA 1 cut(s) 364
PkrI GCNGC 2 cut(s) 92, 243
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PscI ACATGT 1 cut(s) 302
Psp6I CCWGG 3 cut(s) 364, 576, 626
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 3 cut(s) 364, 576, 626
PspN4I GGNNCC 1 cut(s) 441
PspPI GGNCC 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 244
RsaI GTAC 2 cut(s) 8, 298
RsaNI GTAC 2 cut(s) 7, 297
RseI CAYNNNNRTG 1 cut(s) 448
SaqAI TTAA 4 cut(s) 35, 216, 401, 641
SatI GCNGC 2 cut(s) 91, 242
Sau96I GGNCC 1 cut(s) 308
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 3 cut(s) 366, 578, 628
SduI GDGCHC 1 cut(s) 442
SetI ASST 6 cut(s) 73, 225, 246, 340, 418, 629
SexAI ACCWGGT 1 cut(s) 626
SfaNI GCATC 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 448
SphI GCATGC 1 cut(s) 360
Sse9I AATT 2 cut(s) 111, 398
SsiI CCGC 2 cut(s) 31, 207
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 3 cut(s) 364, 576, 626
TaaI ACNGT 2 cut(s) 461, 511
TaqI TCGA 2 cut(s) 258, 513
TasI AATT 2 cut(s) 111, 398
TatI WGTACW 1 cut(s) 6
Tru1I TTAA 4 cut(s) 35, 216, 401, 641
Tru9I TTAA 4 cut(s) 35, 216, 401, 641
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 2 cut(s) 66, 284
TseI GCWGC 2 cut(s) 90, 241
Tsp45I GTSAC 2 cut(s) 66, 284
TspDTI ATGAA 2 cut(s) 141, 146
TspRI CASTG 1 cut(s) 595
XceI RCATGY 3 cut(s) 306, 360, 546
XcmI CCANNNNNNNNNTGG 1 cut(s) 514
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.