Rroxscaffold_1G00044840

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
63889814 .. 63890476
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00044840.1

Sequence Viewer

Length: 663 bp
ATGAGTTCTAGTATCAAAGCGTTTATCCGGATATTGCTTCTCTTCCTTCTTCTCCCCTCTAGCATTTGCCGGCTTCCCCTTGACGCCCTTACGCTAGACCGTCCAATCGGAGACGGCGACGTTTTAGTCTCTAACAAGCAAATCTTTGCACTAGGTTTCTTCGACCTCGGAAATTCTCGGCATCGCTACGCCGGAGTTTGGTATTACAAGATTCCGGAGAAAGCCTTTGTCCGGATTGCGAACAGAGACAACCCGGTCAATGATTCCTATGGAGTTCTATCGATCAATGGTGATGGAGGCCTTGTCATACATGGAAAGGACCTAAGTACACCTCTTTGGTCCGCAAACGTTACTCTCTCTTCACCACACAATTTTACAGCCAAACTTTTGGATACGGGAAATCTTGTTTTACTTGAGAATGGTAGCCAAAGAGTTGTGTGGGAAGGCTTTGATTACCCCTCGGATACACTTCTTCCCTCTATGAAGATTGGGCTGAACCGGCGGTCCGGGTTGGAGAAGCACCTAACATCTTGGAAATCAAAAGATGACTCGGGAACCGGGAGTTGTACATATGGGATAGACCCGATGGGGGTTCCGCGAGACGTTTCGCGCAAGGGTAGAGAACCATTGTGGCGGGGTGGCCCTTGGACCGGGCACGATTGA

Protein Analysis

220

Amino Acids

24.29

Weight (kDa)

8.87

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 77 - 179 1.1e-30 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000099)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11340 AT1G11340 AT1G11340 AT1G11410 AT1G11410 AT1G11410 AT1G11410
fragaria_vesca FvH4_3g03230 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03241 FvH4_3g03242 FvH4_3g03243 FvH4_3g03300 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03310 FvH4_3g03310 FvH4_6g07960
malus_domestica MD00G1203200.v1.1 MD02G1260900.v1.1 MD05G1263100.v1.1 MD05G1332300.v1.1 MD05G1332400.v1.1 MD05G1332600.v1.1 MD05G1332700.v1.1 MD05G1333400.v1.1 MD05G1333500.v1.1 MD05G1333700.v1.1 MD05G1334000.v1.1 MD10G1291100.v1.1 MD10G1291200.v1.1 MD10G1307900.v1.1 MD10G1308000.v1.1 MD10G1308200.v1.1 MD10G1308700.v1.1 MD17G1273200.v1.1
prunus_persica Prupe.4G031200_v2.0.a1 Prupe.4G031400_v2.0.a1 Prupe.4G031500_v2.0.a1 Prupe.4G031600_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.8G238600_v2.0.a1
pyrus_communis pycom02g22290 pycom02g22300 pycom05g30390 pycom05g30430 pycom05g30450 pycom05g30470 pycom05g30510 pycom05g30530 pycom05g30560 pycom05g30570 pycom10g24330 pycom10g25940 pycom10g25950 pycom10g25960 pycom10g25970 pycom10g25980 pycom10g25990 pycom10g26000 pycom10g26010 pycom10g26020 pycom10g26030 pycom17g27160
rosa_chinensis RchiOBHm_Chr2g0119951 RchiOBHm_Chr2g0119961 RchiOBHm_Chr2g0119981 RchiOBHm_Chr2g0120011 RchiOBHm_Chr2g0120061 RchiOBHm_Chr2g0120071 RchiOBHm_Chr3g0477341 RchiOBHm_Chr4g0411711 RchiOBHm_Chr4g0411831 RchiOBHm_Chr4g0411951 RchiOBHm_Chr5g0004871 RchiOBHm_Chr5g0004881 RchiOBHm_Chr5g0004891 RchiOBHm_Chr5g0004921 RchiOBHm_Chr5g0004931 RchiOBHm_Chr5g0004941 RchiOBHm_Chr5g0004961 RchiOBHm_Chr5g0004971 RchiOBHm_Chr5g0004991 RchiOBHm_Chr5g0005011 RchiOBHm_Chr5g0005031 RchiOBHm_Chr5g0005041 RchiOBHm_Chr5g0005051 RchiOBHm_Chr5g0034351 RchiOBHm_Chr5g0034371 RchiOBHm_Chr5g0035421 RchiOBHm_Chr5g0035471 RchiOBHm_Chr5g0035541 RchiOBHm_Chr5g0035551 RchiOBHm_Chr5g0035581 RchiOBHm_Chr5g0035651 RchiOBHm_Chr5g0035661 RchiOBHm_Chr5g0035791 RchiOBHm_Chr5g0035821 RchiOBHm_Chr5g0035881 RchiOBHm_Chr5g0035941 RchiOBHm_Chr5g0066181
rosa_laevigata RLG00000008339 RLG00000018505 RLG00000018510 RLG00000018738 RLG00000018741 RLG00000023265 RLG00000031268 RLG00000031270 RLG00000031272 RLG00000031274 RLG00000031275 RLG00000031278 RLG00000031280 RLG00000031281 RLG00000031282 RLG00000032920 RLG00000033622 RLG00000033628 RLG00000033641
rosa_multiflora Rmu_co8015890.1_g000001 Rmu_co8119476.1_g000001 Rmu_co8172744.1_g000001 Rmu_co8181302.1_g000001 Rmu_co8369629.1_g000001 Rmu_co8379407.1_g000001 Rmu_co8412887.1_g000001 Rmu_sc0000084.1_g000011 Rmu_sc0000084.1_g000012 Rmu_sc0000084.1_g000031 Rmu_sc0000593.1_g000007 Rmu_sc0000593.1_g000011 Rmu_sc0000593.1_g000014 Rmu_sc0000657.1_g000020 Rmu_sc0000711.1_g000010 Rmu_sc0000711.1_g000048 Rmu_sc0000813.1_g000017 Rmu_sc0001493.1_g000041 Rmu_sc0002935.1_g000014 Rmu_sc0002935.1_g000019 Rmu_sc0003096.1_g000002 Rmu_sc0003096.1_g000009 Rmu_sc0003096.1_g000010 Rmu_sc0003096.1_g000014 Rmu_sc0003541.1_g000052 Rmu_sc0004315.1_g000002 Rmu_sc0006173.1_g000007 Rmu_sc0006173.1_g000035 Rmu_sc0006369.1_g000003 Rmu_sc0007790.1_g000002 Rmu_sc0009702.1_g000001 Rmu_sc0009702.1_g000002 Rmu_sc0009702.1_g000004 Rmu_sc0009702.1_g000006 Rmu_sc0010714.1_g000001 Rmu_sc0010714.1_g000002 Rmu_sc0010714.1_g000007 Rmu_sc0010714.1_g000008 Rmu_sc0010714.1_g000009 Rmu_sc0011169.1_g000008 Rmu_sc0013877.1_g000001 Rmu_sc0013932.1_g000001 Rmu_sc0015231.1_g000005 Rmu_sc0016543.1_g000002 Rmu_sc0016543.1_g000003 Rmu_sc0017275.1_g000001 Rmu_sc0026861.1_g000001 Rmu_sc0030606.1_g000001
rosa_roxburghii Rroxscaffold_1G00044840 Rroxscaffold_1G00044850 Rroxscaffold_1G00044900 Rroxscaffold_1G00044980 Rroxscaffold_1G00044990 Rroxscaffold_1G00070600 Rroxscaffold_1G00070610 Rroxscaffold_1G00070630 Rroxscaffold_1G00070650 Rroxscaffold_1G00070680 Rroxscaffold_1G00070700 Rroxscaffold_1G00070710 Rroxscaffold_1G00070740 Rroxscaffold_1G00070750 Rroxscaffold_2G00123770 Rroxscaffold_2G00123820 Rroxscaffold_2G00123830 Rroxscaffold_2G00123900 Rroxscaffold_2G00123920 Rroxscaffold_4G00293110 Rroxscaffold_5G00353540 Rroxscaffold_5G00353620
rosa_rugosa Rorug01G0307800 Rorug02G0225800 Rorug02G0225900 Rorug04G0414800 Rorug04G0414800 Rorug04G0414800 Rorug04G0414900 Rorug04G0415000 Rorug05G0151600
rosa_samantha Rh3DG237000 Rh4BG166800 Rh5BG042300 Rh5CG045900 Rh5CG046000 Rh5CG046100 Rh5CG046200 Rh5CG046300 Rh5CG046400 Rh5CG046500 Rh5CG046600 Rh5CG046800 Rh5CG047000 Rh5CG047100 Rh5CG047300 Rh5CG047500 Rh5CG047600 Rh5CG267500 Rh5CG276200
rosa_wichuraiana Rw0G000290 Rw0G007740 Rw0G022180 Rw1G002050 Rw2G022580 Rw2G022600 Rw2G022620 Rw2G022650 Rw2G022660 Rw4G014100 Rw4G014220 Rw5G004100 Rw5G004110 Rw5G004120 Rw5G004130 Rw5G004140 Rw5G004160 Rw5G004170 Rw5G016790 Rw5G021680 Rw5G022380 Rw5G022450 Rw5G022470 Rw5G022490 Rw5G022540 Rw5G022570 Rw5G050160 Rw7G005200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 125, 254
AccII CGCG 2 cut(s) 598, 610
AccIII TCCGGA 3 cut(s) 27, 214, 231
AciI CCGC 4 cut(s) 342, 502, 596, 634
AclI AACGTT 1 cut(s) 348
AcsI RAATTY 1 cut(s) 172
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 2 cut(s) 328, 568
AfiI CCNNNNNNNGG 4 cut(s) 198, 231, 589, 650
AloI GAACNNNNNNTCC 2 cut(s) 488, 520
Alw26I GTCTC 4 cut(s) 105, 133, 240, 594
Ama87I CYCGRG 1 cut(s) 550
Aor13HI TCCGGA 3 cut(s) 27, 214, 231
AoxI GGCC 2 cut(s) 298, 640
ApoI RAATTY 1 cut(s) 172
AspLEI GCGC 1 cut(s) 612
AspS9I GGNCC 5 cut(s) 319, 339, 504, 641, 648
AsuC2I CCSGG 4 cut(s) 254, 508, 559, 652
AsuHPI GGTGA 2 cut(s) 302, 354
AvaI CYCGRG 1 cut(s) 550
AvaII GGWCC 4 cut(s) 319, 339, 504, 648
BaeGI GKGCMC 1 cut(s) 657
BccI CCATC 2 cut(s) 287, 580
BceAI ACGGC 1 cut(s) 130
BciVI GTATCC 2 cut(s) 385, 457
BcnI CCSGG 4 cut(s) 254, 508, 559, 652
BcoDI GTCTC 4 cut(s) 105, 133, 240, 594
BfaI CTAG 4 cut(s) 9, 60, 95, 152
BfuI GTATCC 2 cut(s) 385, 457
Bme1390I CCNGG 4 cut(s) 254, 508, 559, 652
Bme18I GGWCC 4 cut(s) 319, 339, 504, 648
BmeT110I CYCGRG 1 cut(s) 550
BmgT120I GGNCC 5 cut(s) 319, 339, 504, 641, 648
BmiI GGNNCC 2 cut(s) 556, 594
BmrFI CCNGG 4 cut(s) 254, 508, 559, 652
BmsI GCATC 1 cut(s) 190
BpuEI CTTGAG 1 cut(s) 434
BpuMI CCSGG 4 cut(s) 254, 508, 559, 652
Bsa29I ATCGAT 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 3 cut(s) 166, 459, 644
BsaWI WCCGGW 3 cut(s) 27, 214, 231
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 4 cut(s) 198, 231, 589, 650
Bse118I RCCGGY 2 cut(s) 69, 498
BseAI TCCGGA 3 cut(s) 27, 214, 231
BseCI ATCGAT 1 cut(s) 281
BseDI CCNNGG 3 cut(s) 166, 459, 644
BseLI CCNNNNNNNGG 4 cut(s) 198, 231, 589, 650
BseSI GKGCMC 1 cut(s) 657
Bsh1236I CGCG 2 cut(s) 598, 610
BshFI GGCC 2 cut(s) 300, 642
BshVI ATCGAT 1 cut(s) 281
BsiHKCI CYCGRG 1 cut(s) 550
BslI CCNNNNNNNGG 4 cut(s) 198, 231, 589, 650
BsmAI GTCTC 4 cut(s) 105, 133, 240, 594
BsmBI CGTCTC 2 cut(s) 105, 594
BsnI GGCC 2 cut(s) 300, 642
BsoBI CYCGRG 1 cut(s) 550
Bsp1286I GDGCHC 1 cut(s) 657
Bsp13I TCCGGA 3 cut(s) 27, 214, 231
Bsp1407I TGTACA 1 cut(s) 566
Bsp143I GATC 1 cut(s) 282
BspACI CCGC 4 cut(s) 342, 502, 596, 634
BspANI GGCC 2 cut(s) 300, 642
BspDI ATCGAT 1 cut(s) 281
BspEI TCCGGA 3 cut(s) 27, 214, 231
BspFNI CGCG 2 cut(s) 598, 610
BspLI GGNNCC 2 cut(s) 556, 594
BsrFI RCCGGY 2 cut(s) 69, 498
BsrGI TGTACA 1 cut(s) 566
BssAI RCCGGY 2 cut(s) 69, 498
BssECI CCNNGG 3 cut(s) 166, 459, 644
BssMI GATC 1 cut(s) 282
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 644
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 2 cut(s) 47, 364
BstACI GRCGYC 1 cut(s) 84
BstAUI TGTACA 1 cut(s) 566
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 323
BstFNI CGCG 2 cut(s) 598, 610
BstHHI GCGC 1 cut(s) 612
BstKTI GATC 1 cut(s) 285
BstMAI GTCTC 4 cut(s) 105, 133, 240, 594
BstMBI GATC 1 cut(s) 282
BstMWI GCNNNNNNNGC 1 cut(s) 499
BstSCI CCNGG 4 cut(s) 252, 506, 557, 650
BstSLI GKGCMC 1 cut(s) 657
BstUI CGCG 2 cut(s) 598, 610
BstXI CCANNNNNNTGG 1 cut(s) 388
Bsu15I ATCGAT 1 cut(s) 281
BsuI GTATCC 2 cut(s) 385, 457
BsuRI GGCC 2 cut(s) 300, 642
BsuTUI ATCGAT 1 cut(s) 281
BtgZI GCGATG 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 71
CfoI GCGC 1 cut(s) 612
Cfr10I RCCGGY 2 cut(s) 69, 498
Cfr13I GGNCC 5 cut(s) 319, 339, 504, 641, 648
ClaI ATCGAT 1 cut(s) 281
CpoI CGGWCCG 1 cut(s) 504
CseI GACGC 1 cut(s) 92
Csp6I GTAC 2 cut(s) 327, 567
CspI CGGWCCG 1 cut(s) 504
CviAII CATG 1 cut(s) 311
CviJI RGCY 8 cut(s) 73, 224, 300, 380, 426, 447, 493, 642
CviKI_1 RGCY 8 cut(s) 73, 224, 300, 380, 426, 447, 493, 642
CviQI GTAC 2 cut(s) 327, 567
DdeI CTNAG 1 cut(s) 323
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
DrdI GACNNNNNNGTC 2 cut(s) 125, 254
DseDI GACNNNNNNGTC 2 cut(s) 125, 254
Eam1104I CTCTTC 2 cut(s) 47, 364
EarI CTCTTC 2 cut(s) 47, 364
Eco130I CCWWGG 1 cut(s) 644
Eco147I AGGCCT 1 cut(s) 300
Eco47I GGWCC 4 cut(s) 319, 339, 504, 648
Eco88I CYCGRG 1 cut(s) 550
EcoO109I RGGNCCY 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 644
ErhI CCWWGG 1 cut(s) 644
Esp3I CGTCTC 2 cut(s) 105, 594
FaeI CATG 1 cut(s) 314
FaiI YATR 6 cut(s) 270, 308, 312, 482, 571, 573
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FatI CATG 1 cut(s) 310
FauI CCCGC 1 cut(s) 627
FauNDI CATATG 1 cut(s) 571
FspBI CTAG 4 cut(s) 9, 60, 95, 152
GlaI GCGC 1 cut(s) 611
HaeIII GGCC 2 cut(s) 300, 642
HgaI GACGC 1 cut(s) 92
HhaI GCGC 1 cut(s) 612
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 1 cut(s) 314
Hin6I GCGC 1 cut(s) 610
HinP1I GCGC 1 cut(s) 610
HinfI GANTC 3 cut(s) 211, 263, 548
HphI GGTGA 2 cut(s) 302, 354
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 3 cut(s) 110, 170, 463
Hpy188III TCNNGA 4 cut(s) 28, 215, 232, 552
Hpy8I GTNNAC 1 cut(s) 329
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 56, 437
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 3 cut(s) 120, 348, 603
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 499
HpyF3I CTNAG 1 cut(s) 323
HpySE526I ACGT 3 cut(s) 120, 348, 603
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 1 cut(s) 314
HspAI GCGC 1 cut(s) 610
Kpn2I TCCGGA 3 cut(s) 27, 214, 231
KroI GCCGGC 1 cut(s) 69
KroNI GCCGGC 1 cut(s) 71
Kzo9I GATC 1 cut(s) 282
LpnPI CCDG 9 cut(s) 41, 83, 205, 228, 245, 267, 512, 520, 571
LweI GCATC 1 cut(s) 190
MaeI CTAG 4 cut(s) 9, 60, 95, 152
MaeII ACGT 3 cut(s) 120, 348, 603
MaeIII GTNAC 1 cut(s) 349
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 6 cut(s) 34, 41, 151, 351, 464, 496
MhlI GDGCHC 1 cut(s) 657
MluCI AATT 2 cut(s) 172, 370
MlyI GAGTC 1 cut(s) 542
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 6 cut(s) 67, 176, 290, 342, 469, 487
MroI TCCGGA 3 cut(s) 27, 214, 231
MroNI GCCGGC 1 cut(s) 69
MspR9I CCNGG 4 cut(s) 254, 508, 559, 652
MvnI CGCG 2 cut(s) 598, 610
MwoI GCNNNNNNNGC 1 cut(s) 499
NaeI GCCGGC 1 cut(s) 71
NciI CCSGG 4 cut(s) 254, 508, 559, 652
NdeI CATATG 1 cut(s) 571
NdeII GATC 1 cut(s) 282
NgoMIV GCCGGC 1 cut(s) 69
NlaIII CATG 1 cut(s) 314
NlaIV GGNNCC 2 cut(s) 556, 594
NmeAIII GCCGAG 1 cut(s) 157
PceI AGGCCT 1 cut(s) 300
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PdiI GCCGGC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 211, 263
PleI GAGTC 1 cut(s) 542
PpsI GAGTC 1 cut(s) 542
PpuMI RGGWCCY 1 cut(s) 319
Psp1406I AACGTT 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 319
PspN4I GGNNCC 2 cut(s) 556, 594
PspPI GGNCC 5 cut(s) 319, 339, 504, 641, 648
PspPPI RGGWCCY 1 cut(s) 319
RsaI GTAC 2 cut(s) 328, 568
RsaNI GTAC 2 cut(s) 327, 567
Rsr2I CGGWCCG 1 cut(s) 504
RsrII CGGWCCG 1 cut(s) 504
Sau3AI GATC 1 cut(s) 282
Sau96I GGNCC 5 cut(s) 319, 339, 504, 641, 648
SchI GAGTC 1 cut(s) 542
ScrFI CCNGG 4 cut(s) 254, 508, 559, 652
SduI GDGCHC 1 cut(s) 657
SetI ASST 8 cut(s) 123, 157, 168, 324, 334, 351, 525, 606
SfaNI GCATC 1 cut(s) 190
SinI GGWCC 4 cut(s) 319, 339, 504, 648
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 2 cut(s) 172, 370
SseBI AGGCCT 1 cut(s) 300
SsiI CCGC 4 cut(s) 342, 502, 596, 634
SspMI CTAG 4 cut(s) 9, 60, 95, 152
StuI AGGCCT 1 cut(s) 300
StyD4I CCNGG 4 cut(s) 252, 506, 557, 650
StyI CCWWGG 1 cut(s) 644
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 3 cut(s) 123, 351, 606
TaqI TCGA 2 cut(s) 162, 281
TasI AATT 2 cut(s) 172, 370
TatI WGTACW 2 cut(s) 326, 566
TfiI GAWTC 2 cut(s) 211, 263
TspDTI ATGAA 1 cut(s) 497
VpaK11BI GGWCC 4 cut(s) 319, 339, 504, 648
XapI RAATTY 1 cut(s) 172
XspI CTAG 4 cut(s) 9, 60, 95, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.