Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000657.1

Orthogroup ID

OG0000099

Physical Location & Seq

Genomic Coordinates Reverse (-)

48155 .. 51503

Gene Structure 3349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000657.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2385 bp

atgatcattgcattgctcatcttccttctttctctcccctcttgcatttccaacgattccattactccaaaccaaaccatcaaagacggcgacgttttagtctcaagcaggaagctctttgcgctagggttcttcagccctggaaattatggcaaacgttacgttggagtatggtataacaaagttctagagcagaccattgtttgggtagcaaatagagacaaccctgtcaatgattcctctggacttctagtgatcgaggcagatggaggccttgtcatatatggaaaggacagaaaactccccctttggtcagctaatgttactctctcttcttcaaaaaactccatggccaagctgttggatacaggtaacttcgttttgtttgagaatggccggagcctgtgggaagggtttgattatccctcaaatacaatgcttccctttatgaaaattgggctgaaccggcgatccgggctgaaccggttcctaacttcttggaagtcccaagatgatccgggaaccgggaatttctcatataggattgatccggatgggtttccgcagctgtttttgtacaaaggtcaagctcccaggtggcgggccggatcttggatcgggcacagatggagtggtatccccaaaatgactccaaatttcatctttaatgctagttttgtgaacaatcaagatgagctatctgtcatgtatggcgttaaggacgactcaatcttctcaaggatggtgcttgatgaatcgggaatcctcgaacgatccacgtggcaagatcaggaacaccaatggcataagttttggtctgccccggaagagttatgtgacaactatgggaagtgtggtccaaatagcaactgtgacccgtacaatgctggtgagttcgagtgtacatgcctacctgggtttgaacctaagttgctccgtgcatggtacttgagagatggctcggatgggtgtgggaggaaaaaaggagcatccgagtgtaaaaacggagaagggttcgtgaaggtgtcaccagtaaaggcaccagactcatctactgcgcatgtgaacttgaccgtgggtccgaaagaatgcgaagaggaatgcataaggaattgttcttgcatggcatactcgagtgcaggtgacccgcaagaaaggaatggatgcgtgacatggtacggggacttgatggatacaaggacttacacgaatgtcaagcaagatttatatgttcgagttgattcaattgaattagctaaacatgcaaagaatggttctcttagcaagaagggaaagctggcaattacgataacatctattttagtgttctttgttgtgatctctatcacatattggtccacaaagatgaagagaaaaggtacggaaagacaaaatctattttcatttggtgtgatcacaccatcagtctacttggaagattttcctagtagaacaaatcctgatgatagcagattaaagtcggatatacctttctttgatctaagcaccatatctgcagccacaaacaatttctctgattcgaacaggcttggagaaggcggattcggccccgtttataagggagtgctttcttgtggaacagaaatagctgtgaaaagactaagcaaaaattctggccagggaaatgaagagttcaagaatgaagttgtgctgattgcaaaacttcaacacaggaaccttgtgagaattttaggctattgcattcaagatgaagagaagatgctaatctatgaatacatgcctaacaaaaatgaaatgaaaagaacatctctggattggacaagacgcttggagattatctttggcattgctagagggatcttgtatcttcatcaagattcgagattaagaatcatccacagagacctaaaggccagcaatattctactggattatgatatgaaccccaaaattgcagattttggtgtggctagaatattcggagcaaaccaaattgaagcaaatacaaatcgcgtggttggaacatatttcggtgttttgctgctagaaatcgttactggcagaaagaacactgattactactgtgataatcctgactcaaatttggttggacatgtttgggacttgtggaatgaaggccgagccttggaaatcatcgatacatctttgggtgaatcctaccccataagtgaagttcaacggtgcattcaaatagcgctcctgtgcgtgcaagagtacgcaaatgaccggccaaccatgtcaaaagttttgtctgtgttaggcaacgatgcagctcttccttcaccaagaatacctggatttctgttgaatagaagtaactataccagtggagaccccagtgctagtactggagatgctaattccataaattatgtaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

794

Amino Acids

89.04

Weight (kDa)

6.56

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11340 AT1G11340 AT1G11340 AT1G11410 AT1G11410 AT1G11410 AT1G11410
fragaria_vesca	FvH4_3g03230 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03241 FvH4_3g03242 FvH4_3g03243 FvH4_3g03300 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03310 FvH4_3g03310 FvH4_6g07960
malus_domestica	MD00G1203200.v1.1 MD02G1260900.v1.1 MD05G1263100.v1.1 MD05G1332300.v1.1 MD05G1332400.v1.1 MD05G1332600.v1.1 MD05G1332700.v1.1 MD05G1333400.v1.1 MD05G1333500.v1.1 MD05G1333700.v1.1 MD05G1334000.v1.1 MD10G1291100.v1.1 MD10G1291200.v1.1 MD10G1307900.v1.1 MD10G1308000.v1.1 MD10G1308200.v1.1 MD10G1308700.v1.1 MD17G1273200.v1.1
prunus_persica	Prupe.4G031200_v2.0.a1 Prupe.4G031400_v2.0.a1 Prupe.4G031500_v2.0.a1 Prupe.4G031600_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.8G238600_v2.0.a1
pyrus_communis	pycom02g22290 pycom02g22300 pycom05g30390 pycom05g30430 pycom05g30450 pycom05g30470 pycom05g30510 pycom05g30530 pycom05g30560 pycom05g30570 pycom10g24330 pycom10g25940 pycom10g25950 pycom10g25960 pycom10g25970 pycom10g25980 pycom10g25990 pycom10g26000 pycom10g26010 pycom10g26020 pycom10g26030 pycom17g27160
rosa_chinensis	RchiOBHm_Chr2g0119951 RchiOBHm_Chr2g0119961 RchiOBHm_Chr2g0119981 RchiOBHm_Chr2g0120011 RchiOBHm_Chr2g0120061 RchiOBHm_Chr2g0120071 RchiOBHm_Chr3g0477341 RchiOBHm_Chr4g0411711 RchiOBHm_Chr4g0411831 RchiOBHm_Chr4g0411951 RchiOBHm_Chr5g0004871 RchiOBHm_Chr5g0004881 RchiOBHm_Chr5g0004891 RchiOBHm_Chr5g0004921 RchiOBHm_Chr5g0004931 RchiOBHm_Chr5g0004941 RchiOBHm_Chr5g0004961 RchiOBHm_Chr5g0004971 RchiOBHm_Chr5g0004991 RchiOBHm_Chr5g0005011 RchiOBHm_Chr5g0005031 RchiOBHm_Chr5g0005041 RchiOBHm_Chr5g0005051 RchiOBHm_Chr5g0034351 RchiOBHm_Chr5g0034371 RchiOBHm_Chr5g0035421 RchiOBHm_Chr5g0035471 RchiOBHm_Chr5g0035541 RchiOBHm_Chr5g0035551 RchiOBHm_Chr5g0035581 RchiOBHm_Chr5g0035651 RchiOBHm_Chr5g0035661 RchiOBHm_Chr5g0035791 RchiOBHm_Chr5g0035821 RchiOBHm_Chr5g0035881 RchiOBHm_Chr5g0035941 RchiOBHm_Chr5g0066181
rosa_laevigata	RLG00000008339 RLG00000018505 RLG00000018510 RLG00000018738 RLG00000018741 RLG00000023265 RLG00000031268 RLG00000031270 RLG00000031272 RLG00000031274 RLG00000031275 RLG00000031278 RLG00000031280 RLG00000031281 RLG00000031282 RLG00000032920 RLG00000033622 RLG00000033628 RLG00000033641
rosa_multiflora	Rmu_co8015890.1_g000001 Rmu_co8119476.1_g000001 Rmu_co8172744.1_g000001 Rmu_co8181302.1_g000001 Rmu_co8369629.1_g000001 Rmu_co8379407.1_g000001 Rmu_co8412887.1_g000001 Rmu_sc0000084.1_g000011 Rmu_sc0000084.1_g000012 Rmu_sc0000084.1_g000031 Rmu_sc0000593.1_g000007 Rmu_sc0000593.1_g000011 Rmu_sc0000593.1_g000014 Rmu_sc0000657.1_g000020 Rmu_sc0000711.1_g000010 Rmu_sc0000711.1_g000048 Rmu_sc0000813.1_g000017 Rmu_sc0001493.1_g000041 Rmu_sc0002935.1_g000014 Rmu_sc0002935.1_g000019 Rmu_sc0003096.1_g000002 Rmu_sc0003096.1_g000009 Rmu_sc0003096.1_g000010 Rmu_sc0003096.1_g000014 Rmu_sc0003541.1_g000052 Rmu_sc0004315.1_g000002 Rmu_sc0006173.1_g000007 Rmu_sc0006173.1_g000035 Rmu_sc0006369.1_g000003 Rmu_sc0007790.1_g000002 Rmu_sc0009702.1_g000001 Rmu_sc0009702.1_g000002 Rmu_sc0009702.1_g000004 Rmu_sc0009702.1_g000006 Rmu_sc0010714.1_g000001 Rmu_sc0010714.1_g000002 Rmu_sc0010714.1_g000007 Rmu_sc0010714.1_g000008 Rmu_sc0010714.1_g000009 Rmu_sc0011169.1_g000008 Rmu_sc0013877.1_g000001 Rmu_sc0013932.1_g000001 Rmu_sc0015231.1_g000005 Rmu_sc0016543.1_g000002 Rmu_sc0016543.1_g000003 Rmu_sc0017275.1_g000001 Rmu_sc0026861.1_g000001 Rmu_sc0030606.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044840 Rroxscaffold_1G00044850 Rroxscaffold_1G00044900 Rroxscaffold_1G00044980 Rroxscaffold_1G00044990 Rroxscaffold_1G00070600 Rroxscaffold_1G00070610 Rroxscaffold_1G00070630 Rroxscaffold_1G00070650 Rroxscaffold_1G00070680 Rroxscaffold_1G00070700 Rroxscaffold_1G00070710 Rroxscaffold_1G00070740 Rroxscaffold_1G00070750 Rroxscaffold_2G00123770 Rroxscaffold_2G00123820 Rroxscaffold_2G00123830 Rroxscaffold_2G00123900 Rroxscaffold_2G00123920 Rroxscaffold_4G00293110 Rroxscaffold_5G00353540 Rroxscaffold_5G00353620
rosa_rugosa	Rorug01G0307800 Rorug02G0225800 Rorug02G0225900 Rorug04G0414800 Rorug04G0414800 Rorug04G0414800 Rorug04G0414900 Rorug04G0415000 Rorug05G0151600
rosa_samantha	Rh3DG237000 Rh4BG166800 Rh5BG042300 Rh5CG045900 Rh5CG046000 Rh5CG046100 Rh5CG046200 Rh5CG046300 Rh5CG046400 Rh5CG046500 Rh5CG046600 Rh5CG046800 Rh5CG047000 Rh5CG047100 Rh5CG047300 Rh5CG047500 Rh5CG047600 Rh5CG267500 Rh5CG276200
rosa_wichuraiana	Rw0G000290 Rw0G007740 Rw0G022180 Rw1G002050 Rw2G022580 Rw2G022600 Rw2G022620 Rw2G022650 Rw2G022660 Rw4G014100 Rw4G014220 Rw5G004100 Rw5G004110 Rw5G004120 Rw5G004130 Rw5G004140 Rw5G004160 Rw5G004170 Rw5G016790 Rw5G021680 Rw5G022380 Rw5G022450 Rw5G022470 Rw5G022490 Rw5G022540 Rw5G022570 Rw5G050160 Rw7G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1578
AarI	CACCTGC	1 cut(s)	1130
AasI	GACNNNNNNGTC	2 cut(s)	98, 227
Acc16I	TGCGCA	1 cut(s)	1059
Acc36I	ACCTGC	1 cut(s)	1130
AccB1I	GGYRCC	1 cut(s)	1039
AccB7I	CCANNNNNTGG	1 cut(s)	204
AccI	GTMKAC	1 cut(s)	1428
AccII	CGCG	1 cut(s)	1995
AccIII	TCCGGA	1 cut(s)	550
AciI	CCGC	4 cut(s)	563, 601, 1148, 1560
AclI	AACGTT	1 cut(s)	157
AclWI	GGATC	7 cut(s)	465, 509, 542, 616, 623, 768, 1847
AcoI	YGGCCR	4 cut(s)	351, 394, 1636, 2231
AcsI	RAATTY	5 cut(s)	529, 655, 1630, 1707, 2083
AcuI	CTGAAG	1 cut(s)	118
AcvI	CACGTG	1 cut(s)	780
AfaI	GTAC	8 cut(s)	578, 881, 904, 947, 1178, 1381, 2219, 2350
AfeI	AGCGCT	1 cut(s)	2199
AfiI	CCNNNNNNNGG	5 cut(s)	204, 524, 600, 612, 2128
AflIII	ACRYGT	1 cut(s)	2095
AgeI	ACCGGT	1 cut(s)	483
AhdI	GACNNNNNGTC	1 cut(s)	1077
AjnI	CCWGG	5 cut(s)	139, 593, 913, 1638, 2296
AloI	GAACNNNNNNTCC	2 cut(s)	455, 487
Alw26I	GTCTC	4 cut(s)	106, 213, 1878, 2328
AlwI	GGATC	7 cut(s)	465, 509, 542, 616, 623, 768, 1847
Ama87I	CYCGRG	1 cut(s)	1132
Aor13HI	TCCGGA	1 cut(s)	550
Aor51HI	AGCGCT	1 cut(s)	2199
AoxI	GGCC	9 cut(s)	271, 351, 394, 603, 1567, 1636, 1893, 2119, 2231
ApeKI	GCWGC	4 cut(s)	565, 1517, 2023, 2273
ApoI	RAATTY	5 cut(s)	529, 655, 1630, 1707, 2083
ArsI	GACNNNNNNTTYG	2 cut(s)	2237, 2269
AsiGI	ACCGGT	1 cut(s)	483
Asp700I	GAANNNNTTC	2 cut(s)	485, 1440
AspLEI	GCGC	3 cut(s)	124, 1060, 2200
AspS9I	GGNCC	5 cut(s)	603, 857, 1079, 1356, 1568
AsuC2I	CCSGG	4 cut(s)	475, 519, 526, 824
AsuHPI	GGTGA	5 cut(s)	902, 1020, 1154, 2165, 2277
AsuII	TTCGAA	1 cut(s)	1541
AvaI	CYCGRG	1 cut(s)	1132
AvaII	GGWCC	3 cut(s)	857, 1079, 1356
BaeGI	GKGCMC	1 cut(s)	624
BalI	TGGCCA	2 cut(s)	353, 1638
BanI	GGYRCC	1 cut(s)	1039
BarI	GAAGNNNNNNTAC	2 cut(s)	2308, 2340
BbrPI	CACGTG	1 cut(s)	780
BbvI	GCAGC	4 cut(s)	577, 1529, 2010, 2285
BccI	CCATC	9 cut(s)	86, 260, 548, 621, 736, 950, 959, 1183, 1429
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	5 cut(s)	141, 595, 915, 1640, 2298
BciVI	GTATCC	3 cut(s)	358, 647, 1186
BclI	TGATCA	2 cut(s)	3, 1413
BcnI	CCSGG	4 cut(s)	475, 519, 526, 824
BcoDI	GTCTC	4 cut(s)	106, 213, 1878, 2328
BfaI	CTAG	9 cut(s)	125, 188, 251, 672, 1446, 1833, 1953, 2027, 2346
BfmI	CTRYAG	1 cut(s)	1515
BfoI	RGCGCY	1 cut(s)	2201
BfuAI	ACCTGC	1 cut(s)	1130
BfuI	GTATCC	3 cut(s)	358, 647, 1186
BisI	GCNGC	4 cut(s)	566, 1518, 2024, 2274
BlsI	GCNGC	4 cut(s)	567, 1519, 2025, 2275
BmcAI	AGTACT	1 cut(s)	2350
Bme1390I	CCNGG	9 cut(s)	141, 475, 519, 526, 595, 824, 915, 1640, 2298
Bme18I	GGWCC	3 cut(s)	857, 1079, 1356
BmeRI	GACNNNNNGTC	1 cut(s)	1077
BmeT110I	CYCGRG	1 cut(s)	1132
BmgT120I	GGNCC	5 cut(s)	603, 857, 1079, 1356, 1568
BmiI	GGNNCC	7 cut(s)	401, 488, 523, 1041, 1080, 1570, 1697
BmrFI	CCNGG	9 cut(s)	141, 475, 519, 526, 595, 824, 915, 1640, 2298
BmrI	ACTGGG	1 cut(s)	2334
BmsI	GCATC	5 cut(s)	998, 1154, 1731, 2260, 2347
BmuI	ACTGGG	1 cut(s)	2334
BpmI	CTGGAG	1 cut(s)	2373
Bpu14I	TTCGAA	1 cut(s)	1541
BpuEI	CTTGAG	3 cut(s)	88, 721, 970
BpuMI	CCSGG	4 cut(s)	475, 519, 526, 824
Bsa29I	ATCGAT	1 cut(s)	2139
BsaAI	YACGTR	1 cut(s)	780
BsaBI	GATNNNNATC	2 cut(s)	1343, 1745
BsaI	GGTCTC	2 cut(s)	1878, 2328
BsaJI	CCNNGG	8 cut(s)	139, 348, 593, 822, 914, 1074, 1639, 2127
BsaWI	WCCGGW	2 cut(s)	483, 550
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	5 cut(s)	204, 524, 600, 612, 2128
Bse118I	RCCGGY	3 cut(s)	465, 483, 2229
Bse1I	ACTGG	6 cut(s)	1031, 1914, 2044, 2328, 2340, 2356
Bse3DI	GCAATG	3 cut(s)	6, 11, 1827
Bse8I	GATNNNNATC	2 cut(s)	1343, 1745
BseAI	TCCGGA	1 cut(s)	550
BseBI	CCWGG	5 cut(s)	141, 595, 915, 1640, 2298
BseCI	ATCGAT	1 cut(s)	2139
BseDI	CCNNGG	8 cut(s)	139, 348, 593, 822, 914, 1074, 1639, 2127
BseGI	GGATG	6 cut(s)	559, 747, 970, 989, 1169, 1875
BseJI	GATNNNNATC	2 cut(s)	1343, 1745
BseLI	CCNNNNNNNGG	5 cut(s)	204, 524, 600, 612, 2128
BseMI	GCAATG	3 cut(s)	6, 11, 1827
BseNI	ACTGG	6 cut(s)	1031, 1914, 2044, 2328, 2340, 2356
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	4 cut(s)	577, 1529, 2010, 2285
BsgI	GTGCAG	1 cut(s)	1158
Bsh1236I	CGCG	1 cut(s)	1995
BshFI	GGCC	9 cut(s)	273, 353, 396, 605, 1569, 1638, 1895, 2121, 2233
BshNI	GGYRCC	1 cut(s)	1039
BshTI	ACCGGT	1 cut(s)	483
BshVI	ATCGAT	1 cut(s)	2139
BsiHKCI	CYCGRG	1 cut(s)	1132
BslFI	GGGAC	3 cut(s)	490, 1196, 2117
BslI	CCNNNNNNNGG	5 cut(s)	204, 524, 600, 612, 2128
BsmAI	GTCTC	4 cut(s)	106, 213, 1878, 2328
BsmFI	GGGAC	3 cut(s)	490, 1196, 2117
BsmI	GAATGC	4 cut(s)	1094, 1106, 1722, 2187
BsnI	GGCC	9 cut(s)	273, 353, 396, 605, 1569, 1638, 1895, 2121, 2233
Bso31I	GGTCTC	2 cut(s)	1878, 2328
BsoBI	CYCGRG	1 cut(s)	1132
Bsp119I	TTCGAA	1 cut(s)	1541
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp13I	TCCGGA	1 cut(s)	550
Bsp1407I	TGTACA	2 cut(s)	576, 902
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	4 cut(s)	563, 601, 1148, 1560
BspANI	GGCC	9 cut(s)	273, 353, 396, 605, 1569, 1638, 1895, 2121, 2233
BspDI	ATCGAT	1 cut(s)	2139
BspEI	TCCGGA	1 cut(s)	550
BspFNI	CGCG	1 cut(s)	1995
BspLI	GGNNCC	7 cut(s)	401, 488, 523, 1041, 1080, 1570, 1697
BspMAI	CTGCAG	1 cut(s)	1519
BspMI	ACCTGC	1 cut(s)	1130
BspPI	GGATC	7 cut(s)	465, 509, 542, 616, 623, 768, 1847
BspQI	GCTCTTC	1 cut(s)	2283
BspT104I	TTCGAA	1 cut(s)	1541
BspT107I	GGYRCC	1 cut(s)	1039
BspTNI	GGTCTC	2 cut(s)	1878, 2328
BsrDI	GCAATG	3 cut(s)	6, 11, 1827
BsrFI	RCCGGY	3 cut(s)	465, 483, 2229
BsrGI	TGTACA	2 cut(s)	576, 902
BsrI	ACTGG	6 cut(s)	1031, 1914, 2044, 2328, 2340, 2356
BssAI	RCCGGY	3 cut(s)	465, 483, 2229
BssECI	CCNNGG	8 cut(s)	139, 348, 593, 822, 914, 1074, 1639, 2127
BssT1I	CCWWGG	2 cut(s)	348, 2127
Bst2UI	CCWGG	5 cut(s)	141, 595, 915, 1640, 2298
Bst4CI	ACNGT	4 cut(s)	872, 1075, 2066, 2184
Bst6I	CTCTTC	7 cut(s)	337, 822, 1089, 1364, 1644, 1728, 2283
BstAUI	TGTACA	2 cut(s)	576, 902
BstBAI	YACGTR	1 cut(s)	780
BstBI	TTCGAA	1 cut(s)	1541
BstC8I	GCNNGC	4 cut(s)	603, 1299, 1897, 2210
BstDEI	CTNAG	4 cut(s)	927, 1280, 1502, 1622
BstDSI	CCRYGG	2 cut(s)	348, 1074
BstEII	GGTNACC	1 cut(s)	1142
BstF5I	GGATG	6 cut(s)	559, 747, 970, 989, 1169, 1875
BstFNI	CGCG	1 cut(s)	1995
BstH2I	RGCGCY	1 cut(s)	2201
BstHHI	GCGC	3 cut(s)	124, 1060, 2200
BstMAI	GTCTC	4 cut(s)	106, 213, 1878, 2328
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 466, 475, 1262, 1566
BstNI	CCWGG	5 cut(s)	141, 595, 915, 1640, 2298
BstNSI	RCATGY	5 cut(s)	909, 1064, 1265, 1762, 2099
BstPI	GGTNACC	1 cut(s)	1142
BstSCI	CCNGG	9 cut(s)	139, 473, 517, 524, 593, 822, 913, 1638, 2296
BstSFI	CTRYAG	1 cut(s)	1515
BstSLI	GKGCMC	1 cut(s)	624
BstUI	CGCG	1 cut(s)	1995
BstV1I	GCAGC	4 cut(s)	577, 1529, 2010, 2285
BstX2I	RGATCY	2 cut(s)	608, 1839
BstXI	CCANNNNNNTGG	1 cut(s)	361
BstYI	RGATCY	2 cut(s)	608, 1839
Bsu15I	ATCGAT	1 cut(s)	2139
BsuI	GTATCC	3 cut(s)	358, 647, 1186
BsuRI	GGCC	9 cut(s)	273, 353, 396, 605, 1569, 1638, 1895, 2121, 2233
BsuTUI	ATCGAT	1 cut(s)	2139
BtgI	CCRYGG	2 cut(s)	348, 1074
BtsCI	GGATG	6 cut(s)	559, 747, 970, 989, 1169, 1875
BtsIMutI	CAGTG	3 cut(s)	2052, 2335, 2347
BveI	ACCTGC	1 cut(s)	1130
Cac8I	GCNNGC	4 cut(s)	603, 1299, 1897, 2210
CfoI	GCGC	3 cut(s)	124, 1060, 2200
Cfr10I	RCCGGY	3 cut(s)	465, 483, 2229
Cfr13I	GGNCC	5 cut(s)	603, 857, 1079, 1356, 1568
ClaI	ATCGAT	1 cut(s)	2139
CseI	GACGC	1 cut(s)	1815
Csp6I	GTAC	8 cut(s)	577, 880, 903, 946, 1177, 1380, 2218, 2349
CspAI	ACCGGT	1 cut(s)	483
CspCI	CAANNNNNGTGG	2 cut(s)	1977, 2012
CviQI	GTAC	8 cut(s)	577, 880, 903, 946, 1177, 1380, 2218, 2349
DdeI	CTNAG	4 cut(s)	927, 1280, 1502, 1622
DrdI	GACNNNNNNGTC	2 cut(s)	98, 227
DriI	GACNNNNNGTC	1 cut(s)	1077
DseDI	GACNNNNNNGTC	2 cut(s)	98, 227
EaeI	YGGCCR	4 cut(s)	351, 394, 1636, 2231
Eam1104I	CTCTTC	7 cut(s)	337, 822, 1089, 1364, 1644, 1728, 2283
Eam1105I	GACNNNNNGTC	1 cut(s)	1077
EarI	CTCTTC	7 cut(s)	337, 822, 1089, 1364, 1644, 1728, 2283
EciI	GGCGGA	1 cut(s)	1575
Eco130I	CCWWGG	2 cut(s)	348, 2127
Eco147I	AGGCCT	1 cut(s)	273
Eco31I	GGTCTC	2 cut(s)	1878, 2328
Eco47I	GGWCC	3 cut(s)	857, 1079, 1356
Eco47III	AGCGCT	1 cut(s)	2199
Eco57I	CTGAAG	1 cut(s)	118
Eco72I	CACGTG	1 cut(s)	780
Eco88I	CYCGRG	1 cut(s)	1132
Eco91I	GGTNACC	1 cut(s)	1142
EcoO65I	GGTNACC	1 cut(s)	1142
EcoRII	CCWGG	5 cut(s)	139, 593, 913, 1638, 2296
EcoT14I	CCWWGG	2 cut(s)	348, 2127
EcoT22I	ATGCAT	1 cut(s)	1106
ErhI	CCWWGG	2 cut(s)	348, 2127
FaqI	GGGAC	3 cut(s)	490, 1196, 2117
FauI	CCCGC	2 cut(s)	594, 1155
FbaI	TGATCA	2 cut(s)	3, 1413
FblI	GTMKAC	1 cut(s)	1428
Fnu4HI	GCNGC	4 cut(s)	566, 1518, 2024, 2274
FokI	GGATG	6 cut(s)	566, 754, 976, 977, 1176, 1862
Fsp4HI	GCNGC	4 cut(s)	566, 1518, 2024, 2274
FspBI	CTAG	9 cut(s)	125, 188, 251, 672, 1446, 1833, 1953, 2027, 2346
FspI	TGCGCA	1 cut(s)	1059
GlaI	GCGC	3 cut(s)	123, 1059, 2199
GluI	GCNGC	4 cut(s)	566, 1518, 2024, 2274
GsuI	CTGGAG	1 cut(s)	2373
HaeII	RGCGCY	1 cut(s)	2201
HaeIII	GGCC	9 cut(s)	273, 353, 396, 605, 1569, 1638, 1895, 2121, 2233
HgaI	GACGC	1 cut(s)	1815
HhaI	GCGC	3 cut(s)	124, 1060, 2200
Hin6I	GCGC	3 cut(s)	122, 1058, 2198
HinP1I	GCGC	3 cut(s)	122, 1058, 2198
HphI	GGTGA	5 cut(s)	902, 1020, 1154, 2165, 2277
Hpy166II	GTNNAC	5 cut(s)	682, 903, 1066, 1359, 1429
Hpy188I	TCNGA	6 cut(s)	964, 994, 1083, 1483, 1537, 1964
Hpy8I	GTNNAC	5 cut(s)	682, 903, 1066, 1359, 1429
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	8 cut(s)	35, 404, 1004, 1015, 1282, 1550, 2111, 2292
HpyCH4III	ACNGT	4 cut(s)	872, 1075, 2066, 2184
HpyCH4IV	ACGT	4 cut(s)	93, 157, 162, 779
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 466, 475, 1262, 1566
HpyF3I	CTNAG	4 cut(s)	927, 1280, 1502, 1622
HpySE526I	ACGT	4 cut(s)	93, 157, 162, 779
HspAI	GCGC	3 cut(s)	122, 1058, 2198
Kpn2I	TCCGGA	1 cut(s)	550
Ksp22I	TGATCA	2 cut(s)	3, 1413
LguI	GCTCTTC	1 cut(s)	2283
LmnI	GCTCC	6 cut(s)	399, 595, 939, 986, 1964, 2205
Lsp1109I	GCAGC	4 cut(s)	577, 1529, 2010, 2285
LweI	GCATC	5 cut(s)	998, 1154, 1731, 2260, 2347
MaeI	CTAG	9 cut(s)	125, 188, 251, 672, 1446, 1833, 1953, 2027, 2346
MaeII	ACGT	4 cut(s)	93, 157, 162, 779
MfeI	CAATTG	1 cut(s)	1245
MflI	RGATCY	2 cut(s)	608, 1839
MhlI	GDGCHC	1 cut(s)	624
MlsI	TGGCCA	2 cut(s)	353, 1638
MluNI	TGGCCA	2 cut(s)	353, 1638
MlyI	GAGTC	4 cut(s)	643, 719, 1040, 2072
MmeI	TCCRAC	6 cut(s)	75, 145, 342, 1461, 1981, 2071
MnlI	CCTC	9 cut(s)	49, 250, 253, 263, 436, 776, 969, 1090, 1829
Mox20I	TGGCCA	2 cut(s)	353, 1638
Mph1103I	ATGCAT	1 cut(s)	1106
MroI	TCCGGA	1 cut(s)	550
MroXI	GAANNNNTTC	2 cut(s)	485, 1440
MscI	TGGCCA	2 cut(s)	353, 1638
MseI	TTAA	4 cut(s)	666, 717, 1475, 1868
MslI	CAYNNNNRTG	2 cut(s)	994, 1364
Msp20I	TGGCCA	2 cut(s)	353, 1638
MspA1I	CMGCKG	1 cut(s)	568
MspR9I	CCNGG	9 cut(s)	141, 475, 519, 526, 595, 824, 915, 1640, 2298
MunI	CAATTG	1 cut(s)	1245
Mva1269I	GAATGC	4 cut(s)	1094, 1106, 1722, 2187
MvaI	CCWGG	5 cut(s)	141, 595, 915, 1640, 2298
MvnI	CGCG	1 cut(s)	1995
MwoI	GCNNNNNNNGC	5 cut(s)	121, 466, 475, 1262, 1566
NciI	CCSGG	4 cut(s)	475, 519, 526, 824
NcoI	CCATGG	1 cut(s)	348
NlaIV	GGNNCC	7 cut(s)	401, 488, 523, 1041, 1080, 1570, 1697
NmeAIII	GCCGAG	1 cut(s)	2147
NmuCI	GTSAC	5 cut(s)	836, 872, 1026, 1142, 1168
NsbI	TGCGCA	1 cut(s)	1059
NsiI	ATGCAT	1 cut(s)	1106
NspI	RCATGY	5 cut(s)	909, 1064, 1265, 1762, 2099
NspV	TTCGAA	1 cut(s)	1541
PaeR7I	CTCGAG	1 cut(s)	1132
PaqCI	CACCTGC	1 cut(s)	1130
PceI	AGGCCT	1 cut(s)	273
PciI	ACATGT	1 cut(s)	2095
PciSI	GCTCTTC	1 cut(s)	2283
PctI	GAATGC	4 cut(s)	1094, 1106, 1722, 2187
PdmI	GAANNNNTTC	2 cut(s)	485, 1440
PflMI	CCANNNNNTGG	1 cut(s)	204
PfoI	TCCNGGA	1 cut(s)	517
PinAI	ACCGGT	1 cut(s)	483
PkrI	GCNGC	4 cut(s)	567, 1519, 2025, 2275
PleI	GAGTC	4 cut(s)	643, 719, 1040, 2072
PmaCI	CACGTG	1 cut(s)	780
PmlI	CACGTG	1 cut(s)	780
PpsI	GAGTC	4 cut(s)	643, 719, 1040, 2072
Ppu21I	YACGTR	1 cut(s)	780
PscI	ACATGT	1 cut(s)	2095
PsiI	TTATAA	1 cut(s)	1578
Psp1406I	AACGTT	1 cut(s)	157
Psp6I	CCWGG	5 cut(s)	139, 593, 913, 1638, 2296
PspCI	CACGTG	1 cut(s)	780
PspEI	GGTNACC	1 cut(s)	1142
PspGI	CCWGG	5 cut(s)	139, 593, 913, 1638, 2296
PspN4I	GGNNCC	7 cut(s)	401, 488, 523, 1041, 1080, 1570, 1697
PspPI	GGNCC	5 cut(s)	603, 857, 1079, 1356, 1568
PspXI	VCTCGAGB	1 cut(s)	1132
PsrI	GAACNNNNNNTAC	2 cut(s)	2042, 2074
PstI	CTGCAG	1 cut(s)	1519
PsuI	RGATCY	2 cut(s)	608, 1839
PvuII	CAGCTG	1 cut(s)	568
RsaI	GTAC	8 cut(s)	578, 881, 904, 947, 1178, 1381, 2219, 2350
RsaNI	GTAC	8 cut(s)	577, 880, 903, 946, 1177, 1380, 2218, 2349
RseI	CAYNNNNRTG	2 cut(s)	994, 1364
SapI	GCTCTTC	1 cut(s)	2283
SaqAI	TTAA	4 cut(s)	666, 717, 1475, 1868
SatI	GCNGC	4 cut(s)	566, 1518, 2024, 2274
Sau96I	GGNCC	5 cut(s)	603, 857, 1079, 1356, 1568
ScaI	AGTACT	1 cut(s)	2350
SchI	GAGTC	4 cut(s)	643, 719, 1040, 2072
ScrFI	CCNGG	9 cut(s)	141, 475, 519, 526, 595, 824, 915, 1640, 2298
SduI	GDGCHC	1 cut(s)	624
SfaNI	GCATC	5 cut(s)	998, 1154, 1731, 2260, 2347
SfcI	CTRYAG	1 cut(s)	1515
Sfr274I	CTCGAG	1 cut(s)	1132
SfuI	TTCGAA	1 cut(s)	1541
SinI	GGWCC	3 cut(s)	857, 1079, 1356
SlaI	CTCGAG	1 cut(s)	1132
SmiMI	CAYNNNNRTG	2 cut(s)	994, 1364
SmlI	CTYRAG	4 cut(s)	103, 736, 949, 1132
SmoI	CTYRAG	4 cut(s)	103, 736, 949, 1132
SseBI	AGGCCT	1 cut(s)	273
SsiI	CCGC	4 cut(s)	563, 601, 1148, 1560
SspI	AATATT	2 cut(s)	1903, 1959
SspMI	CTAG	9 cut(s)	125, 188, 251, 672, 1446, 1833, 1953, 2027, 2346
StuI	AGGCCT	1 cut(s)	273
StyD4I	CCNGG	9 cut(s)	139, 473, 517, 524, 593, 822, 913, 1638, 2296
StyI	CCWWGG	2 cut(s)	348, 2127
TaaI	ACNGT	4 cut(s)	872, 1075, 2066, 2184
TaiI	ACGT	4 cut(s)	96, 160, 165, 782
TaqI	TCGA	8 cut(s)	258, 768, 897, 1133, 1234, 1541, 1862, 2139
TatI	WGTACW	3 cut(s)	576, 902, 2348
Tru1I	TTAA	4 cut(s)	666, 717, 1475, 1868
Tru9I	TTAA	4 cut(s)	666, 717, 1475, 1868
TscAI	CASTG	3 cut(s)	2059, 2335, 2347
TseFI	GTSAC	5 cut(s)	836, 872, 1026, 1142, 1168
TseI	GCWGC	4 cut(s)	565, 1517, 2023, 2273
Tsp45I	GTSAC	5 cut(s)	836, 872, 1026, 1142, 1168
TspGWI	ACGGA	3 cut(s)	926, 1020, 1397
TspRI	CASTG	3 cut(s)	2059, 2335, 2347
Van91I	CCANNNNNTGG	1 cut(s)	204
VpaK11BI	GGWCC	3 cut(s)	857, 1079, 1356
XapI	RAATTY	5 cut(s)	529, 655, 1630, 1707, 2083
XbaI	TCTAGA	1 cut(s)	187
XceI	RCATGY	5 cut(s)	909, 1064, 1265, 1762, 2099
XhoI	CTCGAG	1 cut(s)	1132
XmiI	GTMKAC	1 cut(s)	1428
XmnI	GAANNNNTTC	2 cut(s)	485, 1440
XspI	CTAG	9 cut(s)	125, 188, 251, 672, 1446, 1833, 1953, 2027, 2346
ZrmI	AGTACT	1 cut(s)	2350
Zsp2I	ATGCAT	1 cut(s)	1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.