RchiOBHm_Chr5g0035651

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
29671987 .. 29672595
609 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31449

Sequence Viewer

Length: 609 bp
ATGAGTTCCAGTATCGAAACGTTTATCCAGATATTGCTTCTCTTCCTTCTTCTCCCCTCTAGCATTTGCCAGCTTCCCCTTGACGCCCTTACGCTAGACCGTCCCATCAGAATCGACGGCGACGTTTTAGTCTCTAGCAACCAAATCTTTGTACTAGGGTTCTTCAGCCCCAGAAATTCTGGGCACCACTACGCTGGCGTTTGGTATAACAAGATTCTAGAGAAAACCATTATCTGGGTTGCGAACAGAGACAACCCAGTCAATGATTCCTATGGAGTGCTATCGATCAACGGTGATGGAGGCCTTGTCATACAAGGAAAGGACCCAACTACCCCTCTTTGGTCCACAAACGTTACTCTCTCTTCACCAAACAATTTCACAGCCAAGCTTTTGGATACAGGAAATCTTGTTTTACTTGAGAATGGTAGCCAAAGAGTTGTGTGGGAAGGCTTTGATTACCCCTCAGATACACTGCTTCCCTCTATGAAGATTGGGCTGAACCGGCAGTCTGGGTTGGAGAAGCAGAGTCTGAAAACCATTCAAAACCAACAAACCATGAGCAAATTACATCCAGCAAAAACTAAAGATCAAACATTTTCAAAGCAATAA

Protein Analysis

202

Amino Acids

22.42

Weight (kDa)

6.82

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 76 - 175 8.8e-32 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000099)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11340 AT1G11340 AT1G11340 AT1G11410 AT1G11410 AT1G11410 AT1G11410
fragaria_vesca FvH4_3g03230 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03241 FvH4_3g03242 FvH4_3g03243 FvH4_3g03300 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03310 FvH4_3g03310 FvH4_6g07960
malus_domestica MD00G1203200.v1.1 MD02G1260900.v1.1 MD05G1263100.v1.1 MD05G1332300.v1.1 MD05G1332400.v1.1 MD05G1332600.v1.1 MD05G1332700.v1.1 MD05G1333400.v1.1 MD05G1333500.v1.1 MD05G1333700.v1.1 MD05G1334000.v1.1 MD10G1291100.v1.1 MD10G1291200.v1.1 MD10G1307900.v1.1 MD10G1308000.v1.1 MD10G1308200.v1.1 MD10G1308700.v1.1 MD17G1273200.v1.1
prunus_persica Prupe.4G031200_v2.0.a1 Prupe.4G031400_v2.0.a1 Prupe.4G031500_v2.0.a1 Prupe.4G031600_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.8G238600_v2.0.a1
pyrus_communis pycom02g22290 pycom02g22300 pycom05g30390 pycom05g30430 pycom05g30450 pycom05g30470 pycom05g30510 pycom05g30530 pycom05g30560 pycom05g30570 pycom10g24330 pycom10g25940 pycom10g25950 pycom10g25960 pycom10g25970 pycom10g25980 pycom10g25990 pycom10g26000 pycom10g26010 pycom10g26020 pycom10g26030 pycom17g27160
rosa_chinensis RchiOBHm_Chr2g0119951 RchiOBHm_Chr2g0119961 RchiOBHm_Chr2g0119981 RchiOBHm_Chr2g0120011 RchiOBHm_Chr2g0120061 RchiOBHm_Chr2g0120071 RchiOBHm_Chr3g0477341 RchiOBHm_Chr4g0411711 RchiOBHm_Chr4g0411831 RchiOBHm_Chr4g0411951 RchiOBHm_Chr5g0004871 RchiOBHm_Chr5g0004881 RchiOBHm_Chr5g0004891 RchiOBHm_Chr5g0004921 RchiOBHm_Chr5g0004931 RchiOBHm_Chr5g0004941 RchiOBHm_Chr5g0004961 RchiOBHm_Chr5g0004971 RchiOBHm_Chr5g0004991 RchiOBHm_Chr5g0005011 RchiOBHm_Chr5g0005031 RchiOBHm_Chr5g0005041 RchiOBHm_Chr5g0005051 RchiOBHm_Chr5g0034351 RchiOBHm_Chr5g0034371 RchiOBHm_Chr5g0035421 RchiOBHm_Chr5g0035471 RchiOBHm_Chr5g0035541 RchiOBHm_Chr5g0035551 RchiOBHm_Chr5g0035581 RchiOBHm_Chr5g0035651 RchiOBHm_Chr5g0035661 RchiOBHm_Chr5g0035791 RchiOBHm_Chr5g0035821 RchiOBHm_Chr5g0035881 RchiOBHm_Chr5g0035941 RchiOBHm_Chr5g0066181
rosa_laevigata RLG00000008339 RLG00000018505 RLG00000018510 RLG00000018738 RLG00000018741 RLG00000023265 RLG00000031268 RLG00000031270 RLG00000031272 RLG00000031274 RLG00000031275 RLG00000031278 RLG00000031280 RLG00000031281 RLG00000031282 RLG00000032920 RLG00000033622 RLG00000033628 RLG00000033641
rosa_multiflora Rmu_co8015890.1_g000001 Rmu_co8119476.1_g000001 Rmu_co8172744.1_g000001 Rmu_co8181302.1_g000001 Rmu_co8369629.1_g000001 Rmu_co8379407.1_g000001 Rmu_co8412887.1_g000001 Rmu_sc0000084.1_g000011 Rmu_sc0000084.1_g000012 Rmu_sc0000084.1_g000031 Rmu_sc0000593.1_g000007 Rmu_sc0000593.1_g000011 Rmu_sc0000593.1_g000014 Rmu_sc0000657.1_g000020 Rmu_sc0000711.1_g000010 Rmu_sc0000711.1_g000048 Rmu_sc0000813.1_g000017 Rmu_sc0001493.1_g000041 Rmu_sc0002935.1_g000014 Rmu_sc0002935.1_g000019 Rmu_sc0003096.1_g000002 Rmu_sc0003096.1_g000009 Rmu_sc0003096.1_g000010 Rmu_sc0003096.1_g000014 Rmu_sc0003541.1_g000052 Rmu_sc0004315.1_g000002 Rmu_sc0006173.1_g000007 Rmu_sc0006173.1_g000035 Rmu_sc0006369.1_g000003 Rmu_sc0007790.1_g000002 Rmu_sc0009702.1_g000001 Rmu_sc0009702.1_g000002 Rmu_sc0009702.1_g000004 Rmu_sc0009702.1_g000006 Rmu_sc0010714.1_g000001 Rmu_sc0010714.1_g000002 Rmu_sc0010714.1_g000007 Rmu_sc0010714.1_g000008 Rmu_sc0010714.1_g000009 Rmu_sc0011169.1_g000008 Rmu_sc0013877.1_g000001 Rmu_sc0013932.1_g000001 Rmu_sc0015231.1_g000005 Rmu_sc0016543.1_g000002 Rmu_sc0016543.1_g000003 Rmu_sc0017275.1_g000001 Rmu_sc0026861.1_g000001 Rmu_sc0030606.1_g000001
rosa_roxburghii Rroxscaffold_1G00044840 Rroxscaffold_1G00044850 Rroxscaffold_1G00044900 Rroxscaffold_1G00044980 Rroxscaffold_1G00044990 Rroxscaffold_1G00070600 Rroxscaffold_1G00070610 Rroxscaffold_1G00070630 Rroxscaffold_1G00070650 Rroxscaffold_1G00070680 Rroxscaffold_1G00070700 Rroxscaffold_1G00070710 Rroxscaffold_1G00070740 Rroxscaffold_1G00070750 Rroxscaffold_2G00123770 Rroxscaffold_2G00123820 Rroxscaffold_2G00123830 Rroxscaffold_2G00123900 Rroxscaffold_2G00123920 Rroxscaffold_4G00293110 Rroxscaffold_5G00353540 Rroxscaffold_5G00353620
rosa_rugosa Rorug01G0307800 Rorug02G0225800 Rorug02G0225900 Rorug04G0414800 Rorug04G0414800 Rorug04G0414800 Rorug04G0414900 Rorug04G0415000 Rorug05G0151600
rosa_samantha Rh3DG237000 Rh4BG166800 Rh5BG042300 Rh5CG045900 Rh5CG046000 Rh5CG046100 Rh5CG046200 Rh5CG046300 Rh5CG046400 Rh5CG046500 Rh5CG046600 Rh5CG046800 Rh5CG047000 Rh5CG047100 Rh5CG047300 Rh5CG047500 Rh5CG047600 Rh5CG267500 Rh5CG276200
rosa_wichuraiana Rw0G000290 Rw0G007740 Rw0G022180 Rw1G002050 Rw2G022580 Rw2G022600 Rw2G022620 Rw2G022650 Rw2G022660 Rw4G014100 Rw4G014220 Rw5G004100 Rw5G004110 Rw5G004120 Rw5G004130 Rw5G004140 Rw5G004160 Rw5G004170 Rw5G016790 Rw5G021680 Rw5G022380 Rw5G022450 Rw5G022470 Rw5G022490 Rw5G022540 Rw5G022570 Rw5G050160 Rw7G005200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 128, 257
AccB1I GGYRCC 1 cut(s) 183
AccB7I CCANNNNNTGG 1 cut(s) 234
AclI AACGTT 2 cut(s) 20, 351
AcsI RAATTY 1 cut(s) 175
AcuI CTGAAG 1 cut(s) 148
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 2 cut(s) 234, 339
AgsI TTSAA 2 cut(s) 542, 600
AluBI AGCT 2 cut(s) 73, 388
AluI AGCT 2 cut(s) 73, 388
Alw26I GTCTC 2 cut(s) 136, 243
AlwNI CAGNNNCTG 1 cut(s) 529
AoxI GGCC 1 cut(s) 301
ApoI RAATTY 1 cut(s) 175
AspS9I GGNCC 2 cut(s) 322, 342
AsuHPI GGTGA 2 cut(s) 305, 357
AvaII GGWCC 2 cut(s) 322, 342
BaeGI GKGCMC 1 cut(s) 186
BanI GGYRCC 1 cut(s) 183
BccI CCATC 2 cut(s) 113, 290
BceAI ACGGC 1 cut(s) 133
BciVI GTATCC 1 cut(s) 388
BcoDI GTCTC 2 cut(s) 136, 243
BfaI CTAG 5 cut(s) 60, 95, 135, 155, 218
BfuI GTATCC 1 cut(s) 388
Bme18I GGWCC 2 cut(s) 322, 342
BmgT120I GGNCC 2 cut(s) 322, 342
BmiI GGNNCC 2 cut(s) 185, 324
BmrI ACTGGG 1 cut(s) 251
BmuI ACTGGG 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 437
Bsa29I ATCGAT 1 cut(s) 284
BsaHI GRCGYC 1 cut(s) 84
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 339
Bse118I RCCGGY 1 cut(s) 501
Bse1I ACTGG 2 cut(s) 9, 257
BseCI ATCGAT 1 cut(s) 284
BseGI GGATG 1 cut(s) 568
BseLI CCNNNNNNNGG 2 cut(s) 234, 339
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 2 cut(s) 9, 257
BseSI GKGCMC 1 cut(s) 186
BshFI GGCC 1 cut(s) 303
BshNI GGYRCC 1 cut(s) 183
BshVI ATCGAT 1 cut(s) 284
BsiSI CCGG 1 cut(s) 502
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 2 cut(s) 234, 339
BsmAI GTCTC 2 cut(s) 136, 243
BsmFI GGGAC 1 cut(s) 87
BsnI GGCC 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 2 cut(s) 285, 586
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 476
BspDI ATCGAT 1 cut(s) 284
BspLI GGNNCC 2 cut(s) 185, 324
BspT107I GGYRCC 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 501
BsrI ACTGG 2 cut(s) 9, 257
BssAI RCCGGY 1 cut(s) 501
BssMI GATC 2 cut(s) 285, 586
BssNI GRCGYC 1 cut(s) 84
Bst4CI ACNGT 2 cut(s) 101, 293
Bst6I CTCTTC 2 cut(s) 47, 367
BstACI GRCGYC 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 71, 196
BstDEI CTNAG 1 cut(s) 463
BstF5I GGATG 1 cut(s) 568
BstKTI GATC 2 cut(s) 288, 589
BstMAI GTCTC 2 cut(s) 136, 243
BstMBI GATC 2 cut(s) 285, 586
BstMWI GCNNNNNNNGC 1 cut(s) 502
BstSLI GKGCMC 1 cut(s) 186
BstXI CCANNNNNNTGG 2 cut(s) 194, 391
Bsu15I ATCGAT 1 cut(s) 284
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 1 cut(s) 303
BsuTUI ATCGAT 1 cut(s) 284
BtsCI GGATG 1 cut(s) 568
BtsI GCAGTG 1 cut(s) 470
BtsIMutI CAGTG 1 cut(s) 470
Cac8I GCNNGC 2 cut(s) 71, 196
CaiI CAGNNNCTG 1 cut(s) 529
Cfr10I RCCGGY 1 cut(s) 501
Cfr13I GGNCC 2 cut(s) 322, 342
ClaI ATCGAT 1 cut(s) 284
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 152
CviAII CATG 1 cut(s) 556
CviJI RGCY 8 cut(s) 73, 168, 303, 383, 388, 429, 450, 496
CviKI_1 RGCY 8 cut(s) 73, 168, 303, 383, 388, 429, 450, 496
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 1 cut(s) 463
DpnI GATC 2 cut(s) 287, 588
DpnII GATC 2 cut(s) 285, 586
DrdI GACNNNNNNGTC 2 cut(s) 128, 257
DseDI GACNNNNNNGTC 2 cut(s) 128, 257
Eam1104I CTCTTC 2 cut(s) 47, 367
EarI CTCTTC 2 cut(s) 47, 367
Eco147I AGGCCT 1 cut(s) 303
Eco47I GGWCC 2 cut(s) 322, 342
Eco57I CTGAAG 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 322
FaeI CATG 1 cut(s) 559
FaiI YATR 5 cut(s) 207, 273, 311, 485, 557
FaqI GGGAC 1 cut(s) 87
FatI CATG 1 cut(s) 555
FokI GGATG 1 cut(s) 555
FspBI CTAG 5 cut(s) 60, 95, 135, 155, 218
HaeIII GGCC 1 cut(s) 303
HapII CCGG 1 cut(s) 502
HgaI GACGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 1 cut(s) 559
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 4 cut(s) 111, 214, 266, 526
HpaII CCGG 1 cut(s) 502
HphI GGTGA 2 cut(s) 305, 357
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 3 cut(s) 110, 466, 531
Hpy188III TCNNGA 2 cut(s) 28, 218
Hpy8I GTNNAC 1 cut(s) 345
Hpy99I CGWCG 2 cut(s) 119, 125
HpyAV CCTTC 2 cut(s) 56, 440
HpyCH4III ACNGT 2 cut(s) 101, 293
HpyCH4IV ACGT 3 cut(s) 20, 123, 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 502
HpyF3I CTNAG 1 cut(s) 463
HpySE526I ACGT 3 cut(s) 20, 123, 351
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 1 cut(s) 559
Kzo9I GATC 2 cut(s) 285, 586
MaeI CTAG 5 cut(s) 60, 95, 135, 155, 218
MaeII ACGT 3 cut(s) 20, 123, 351
MaeIII GTNAC 1 cut(s) 352
MalI GATC 2 cut(s) 287, 588
MboI GATC 2 cut(s) 285, 586
MboII GAAGA 5 cut(s) 34, 41, 154, 354, 499
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 3 cut(s) 175, 373, 563
MlyI GAGTC 1 cut(s) 535
MmeI TCCRAC 1 cut(s) 495
MnlI CCTC 5 cut(s) 67, 293, 345, 472, 490
MspI CCGG 1 cut(s) 502
MwoI GCNNNNNNNGC 1 cut(s) 502
NdeII GATC 2 cut(s) 285, 586
NlaIII CATG 1 cut(s) 559
NlaIV GGNNCC 2 cut(s) 185, 324
PceI AGGCCT 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 3 cut(s) 111, 214, 266
PflMI CCANNNNNTGG 1 cut(s) 234
PleI GAGTC 1 cut(s) 534
PpsI GAGTC 1 cut(s) 534
PpuMI RGGWCCY 1 cut(s) 322
Psp1406I AACGTT 2 cut(s) 20, 351
Psp5II RGGWCCY 1 cut(s) 322
PspN4I GGNNCC 2 cut(s) 185, 324
PspPI GGNCC 2 cut(s) 322, 342
PspPPI RGGWCCY 1 cut(s) 322
PstNI CAGNNNCTG 1 cut(s) 529
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
Sau3AI GATC 2 cut(s) 285, 586
Sau96I GGNCC 2 cut(s) 322, 342
SchI GAGTC 1 cut(s) 535
SduI GDGCHC 1 cut(s) 186
SetI ASST 5 cut(s) 23, 75, 126, 354, 390
SinI GGWCC 2 cut(s) 322, 342
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 3 cut(s) 175, 373, 563
SseBI AGGCCT 1 cut(s) 303
SspMI CTAG 5 cut(s) 60, 95, 135, 155, 218
StuI AGGCCT 1 cut(s) 303
TaaI ACNGT 2 cut(s) 101, 293
TaiI ACGT 3 cut(s) 23, 126, 354
TaqI TCGA 3 cut(s) 15, 114, 284
TasI AATT 3 cut(s) 175, 373, 563
TatI WGTACW 1 cut(s) 151
TfiI GAWTC 3 cut(s) 111, 214, 266
TscAI CASTG 1 cut(s) 477
TspDTI ATGAA 1 cut(s) 500
TspRI CASTG 1 cut(s) 477
Van91I CCANNNNNTGG 1 cut(s) 234
VpaK11BI GGWCC 2 cut(s) 322, 342
XapI RAATTY 1 cut(s) 175
XbaI TCTAGA 1 cut(s) 217
XspI CTAG 5 cut(s) 60, 95, 135, 155, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.