Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8172744.1

Orthogroup ID

OG0000099

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 488

Gene Structure 488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8172744.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 391 bp

atgaattctattcaatggtctatgatcactgcattgctcatcttccttcttaatctccccttttgcatttccattgattccattactccaaaccaaaccatcaaagacggcgatgttttagtctcaagcaggaagctctttgcgctagggttcttcagccctggaaattctagcaaacgttatgttggagtttggtataacaaagttccagagcagaccattgtttgggttgcaaatagagacaaccctgtcaatgattcctctggacttctagcgatcgatgcacaaggaggccttgtcatatatggaaaggacagaaaactccctctttggtcagttaatgttactctctcttctccaaaaaactccatggccaagctgttggatacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

130

Amino Acids

14.35

Weight (kDa)

9.17

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11340 AT1G11340 AT1G11340 AT1G11410 AT1G11410 AT1G11410 AT1G11410
fragaria_vesca	FvH4_3g03230 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03241 FvH4_3g03242 FvH4_3g03243 FvH4_3g03300 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03310 FvH4_3g03310 FvH4_6g07960
malus_domestica	MD00G1203200.v1.1 MD02G1260900.v1.1 MD05G1263100.v1.1 MD05G1332300.v1.1 MD05G1332400.v1.1 MD05G1332600.v1.1 MD05G1332700.v1.1 MD05G1333400.v1.1 MD05G1333500.v1.1 MD05G1333700.v1.1 MD05G1334000.v1.1 MD10G1291100.v1.1 MD10G1291200.v1.1 MD10G1307900.v1.1 MD10G1308000.v1.1 MD10G1308200.v1.1 MD10G1308700.v1.1 MD17G1273200.v1.1
prunus_persica	Prupe.4G031200_v2.0.a1 Prupe.4G031400_v2.0.a1 Prupe.4G031500_v2.0.a1 Prupe.4G031600_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.8G238600_v2.0.a1
pyrus_communis	pycom02g22290 pycom02g22300 pycom05g30390 pycom05g30430 pycom05g30450 pycom05g30470 pycom05g30510 pycom05g30530 pycom05g30560 pycom05g30570 pycom10g24330 pycom10g25940 pycom10g25950 pycom10g25960 pycom10g25970 pycom10g25980 pycom10g25990 pycom10g26000 pycom10g26010 pycom10g26020 pycom10g26030 pycom17g27160
rosa_chinensis	RchiOBHm_Chr2g0119951 RchiOBHm_Chr2g0119961 RchiOBHm_Chr2g0119981 RchiOBHm_Chr2g0120011 RchiOBHm_Chr2g0120061 RchiOBHm_Chr2g0120071 RchiOBHm_Chr3g0477341 RchiOBHm_Chr4g0411711 RchiOBHm_Chr4g0411831 RchiOBHm_Chr4g0411951 RchiOBHm_Chr5g0004871 RchiOBHm_Chr5g0004881 RchiOBHm_Chr5g0004891 RchiOBHm_Chr5g0004921 RchiOBHm_Chr5g0004931 RchiOBHm_Chr5g0004941 RchiOBHm_Chr5g0004961 RchiOBHm_Chr5g0004971 RchiOBHm_Chr5g0004991 RchiOBHm_Chr5g0005011 RchiOBHm_Chr5g0005031 RchiOBHm_Chr5g0005041 RchiOBHm_Chr5g0005051 RchiOBHm_Chr5g0034351 RchiOBHm_Chr5g0034371 RchiOBHm_Chr5g0035421 RchiOBHm_Chr5g0035471 RchiOBHm_Chr5g0035541 RchiOBHm_Chr5g0035551 RchiOBHm_Chr5g0035581 RchiOBHm_Chr5g0035651 RchiOBHm_Chr5g0035661 RchiOBHm_Chr5g0035791 RchiOBHm_Chr5g0035821 RchiOBHm_Chr5g0035881 RchiOBHm_Chr5g0035941 RchiOBHm_Chr5g0066181
rosa_laevigata	RLG00000008339 RLG00000018505 RLG00000018510 RLG00000018738 RLG00000018741 RLG00000023265 RLG00000031268 RLG00000031270 RLG00000031272 RLG00000031274 RLG00000031275 RLG00000031278 RLG00000031280 RLG00000031281 RLG00000031282 RLG00000032920 RLG00000033622 RLG00000033628 RLG00000033641
rosa_multiflora	Rmu_co8015890.1_g000001 Rmu_co8119476.1_g000001 Rmu_co8172744.1_g000001 Rmu_co8181302.1_g000001 Rmu_co8369629.1_g000001 Rmu_co8379407.1_g000001 Rmu_co8412887.1_g000001 Rmu_sc0000084.1_g000011 Rmu_sc0000084.1_g000012 Rmu_sc0000084.1_g000031 Rmu_sc0000593.1_g000007 Rmu_sc0000593.1_g000011 Rmu_sc0000593.1_g000014 Rmu_sc0000657.1_g000020 Rmu_sc0000711.1_g000010 Rmu_sc0000711.1_g000048 Rmu_sc0000813.1_g000017 Rmu_sc0001493.1_g000041 Rmu_sc0002935.1_g000014 Rmu_sc0002935.1_g000019 Rmu_sc0003096.1_g000002 Rmu_sc0003096.1_g000009 Rmu_sc0003096.1_g000010 Rmu_sc0003096.1_g000014 Rmu_sc0003541.1_g000052 Rmu_sc0004315.1_g000002 Rmu_sc0006173.1_g000007 Rmu_sc0006173.1_g000035 Rmu_sc0006369.1_g000003 Rmu_sc0007790.1_g000002 Rmu_sc0009702.1_g000001 Rmu_sc0009702.1_g000002 Rmu_sc0009702.1_g000004 Rmu_sc0009702.1_g000006 Rmu_sc0010714.1_g000001 Rmu_sc0010714.1_g000002 Rmu_sc0010714.1_g000007 Rmu_sc0010714.1_g000008 Rmu_sc0010714.1_g000009 Rmu_sc0011169.1_g000008 Rmu_sc0013877.1_g000001 Rmu_sc0013932.1_g000001 Rmu_sc0015231.1_g000005 Rmu_sc0016543.1_g000002 Rmu_sc0016543.1_g000003 Rmu_sc0017275.1_g000001 Rmu_sc0026861.1_g000001 Rmu_sc0030606.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044840 Rroxscaffold_1G00044850 Rroxscaffold_1G00044900 Rroxscaffold_1G00044980 Rroxscaffold_1G00044990 Rroxscaffold_1G00070600 Rroxscaffold_1G00070610 Rroxscaffold_1G00070630 Rroxscaffold_1G00070650 Rroxscaffold_1G00070680 Rroxscaffold_1G00070700 Rroxscaffold_1G00070710 Rroxscaffold_1G00070740 Rroxscaffold_1G00070750 Rroxscaffold_2G00123770 Rroxscaffold_2G00123820 Rroxscaffold_2G00123830 Rroxscaffold_2G00123900 Rroxscaffold_2G00123920 Rroxscaffold_4G00293110 Rroxscaffold_5G00353540 Rroxscaffold_5G00353620
rosa_rugosa	Rorug01G0307800 Rorug02G0225800 Rorug02G0225900 Rorug04G0414800 Rorug04G0414800 Rorug04G0414800 Rorug04G0414900 Rorug04G0415000 Rorug05G0151600
rosa_samantha	Rh3DG237000 Rh4BG166800 Rh5BG042300 Rh5CG045900 Rh5CG046000 Rh5CG046100 Rh5CG046200 Rh5CG046300 Rh5CG046400 Rh5CG046500 Rh5CG046600 Rh5CG046800 Rh5CG047000 Rh5CG047100 Rh5CG047300 Rh5CG047500 Rh5CG047600 Rh5CG267500 Rh5CG276200
rosa_wichuraiana	Rw0G000290 Rw0G007740 Rw0G022180 Rw1G002050 Rw2G022580 Rw2G022600 Rw2G022620 Rw2G022650 Rw2G022660 Rw4G014100 Rw4G014220 Rw5G004100 Rw5G004110 Rw5G004120 Rw5G004130 Rw5G004140 Rw5G004160 Rw5G004170 Rw5G016790 Rw5G021680 Rw5G022380 Rw5G022450 Rw5G022470 Rw5G022490 Rw5G022540 Rw5G022570 Rw5G050160 Rw7G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	225
AclI	AACGTT	1 cut(s)	178
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	2 cut(s)	4, 166
AcuI	CTGAAG	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	2 cut(s)	136, 379
AluI	AGCT	2 cut(s)	136, 379
Alw26I	GTCTC	2 cut(s)	127, 234
AoxI	GGCC	2 cut(s)	292, 372
ApoI	RAATTY	2 cut(s)	4, 166
AspLEI	GCGC	1 cut(s)	145
BalI	TGGCCA	1 cut(s)	374
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	162
BciVI	GTATCC	1 cut(s)	379
BclI	TGATCA	1 cut(s)	24
BcoDI	GTCTC	2 cut(s)	127, 234
BfaI	CTAG	3 cut(s)	146, 171, 272
BfuI	GTATCC	1 cut(s)	379
Bme1390I	CCNGG	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	109
Bsa29I	ATCGAT	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	160, 369
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	162
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	160, 369
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMI	GCAATG	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	294, 374
BshVI	ATCGAT	1 cut(s)	279
BsiEI	CGRYCG	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	2 cut(s)	127, 234
BsnI	GGCC	2 cut(s)	294, 374
Bsp143I	GATC	2 cut(s)	24, 276
Bsp19I	CCATGG	1 cut(s)	369
BspANI	GGCC	2 cut(s)	294, 374
BspDI	ATCGAT	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	160, 369
BssMI	GATC	2 cut(s)	24, 276
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	358
BstDSI	CCRYGG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	2 cut(s)	27, 279
BstMAI	GTCTC	2 cut(s)	127, 234
BstMBI	GATC	2 cut(s)	24, 276
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 281
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstXI	CCANNNNNNTGG	1 cut(s)	382
Bsu15I	ATCGAT	1 cut(s)	279
BsuI	GTATCC	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	294, 374
BsuTUI	ATCGAT	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	369
BtgZI	GCGATG	1 cut(s)	126
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
CfoI	GCGC	1 cut(s)	145
ClaI	ATCGAT	1 cut(s)	279
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	5 cut(s)	136, 159, 294, 374, 379
CviKI_1	RGCY	5 cut(s)	136, 159, 294, 374, 379
DpnI	GATC	2 cut(s)	26, 278
DpnII	GATC	2 cut(s)	24, 276
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	369
Eco147I	AGGCCT	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	139
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	1 cut(s)	373
FaiI	YATR	7 cut(s)	23, 183, 198, 302, 304, 306, 371
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	1 cut(s)	369
FbaI	TGATCA	1 cut(s)	24
FspBI	CTAG	3 cut(s)	146, 171, 272
GlaI	GCGC	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	294, 374
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	373
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HinfI	GANTC	2 cut(s)	77, 257
Hpy188III	TCNNGA	2 cut(s)	209, 264
HpyAV	CCTTC	1 cut(s)	56
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	4 cut(s)	32, 66, 233, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 281
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	1 cut(s)	373
HspAI	GCGC	1 cut(s)	143
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	24, 276
LpnPI	CCDG	6 cut(s)	115, 147, 174, 222, 249, 261
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	3 cut(s)	146, 171, 272
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	2 cut(s)	26, 278
MboI	GATC	2 cut(s)	24, 276
MboII	GAAGA	3 cut(s)	34, 145, 345
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	2 cut(s)	4, 166
MluNI	TGGCCA	1 cut(s)	374
MmeI	TCCRAC	2 cut(s)	166, 363
MnlI	CCTC	3 cut(s)	271, 284, 336
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	2 cut(s)	51, 339
Msp20I	TGGCCA	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	142, 281
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	2 cut(s)	24, 276
NlaIII	CATG	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	77, 257
PflMI	CCANNNNNTGG	1 cut(s)	225
Ple19I	CGATCG	1 cut(s)	279
Psp1406I	AACGTT	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PvuI	CGATCG	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	51, 339
Sau3AI	GATC	2 cut(s)	24, 276
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	3 cut(s)	138, 181, 381
SfaNI	GCATC	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	2 cut(s)	4, 166
SseBI	AGGCCT	1 cut(s)	294
SspMI	CTAG	3 cut(s)	146, 171, 272
StuI	AGGCCT	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	369
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	279
TasI	AATT	2 cut(s)	4, 166
TfiI	GAWTC	2 cut(s)	77, 257
Tru1I	TTAA	2 cut(s)	51, 339
Tru9I	TTAA	2 cut(s)	51, 339
TscAI	CASTG	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	34
Van91I	CCANNNNNTGG	1 cut(s)	225
XapI	RAATTY	2 cut(s)	4, 166
XspI	CTAG	3 cut(s)	146, 171, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.