Rmu_sc0000813.1_g000017

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000813.1
OG0000099
Physical Location & Seq
Reverse (-)
102449 .. 103009
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000813.1_g000017.1.cds

Sequence Viewer

Length: 423 bp
atgcttgaggagctgactctcagtgatcataggatggatggagggtggttggcggcgttgcagttttgtgggaatttgaagactctgaggcttgagtcttgccagagtattgattcgagcccgggaccggatgagtacttggggtcttgtggaacaattgaggagttgcatttgctgcggtgtcaagtgcgagataaggatggtatgaaggcattgttctttgtttgtgaagttgtgaaagagcttgctctgcaggattgtaggggtttggtggatgaagtatttggctttgcgaatatttgtaggagagtgaagctgatctccttggaaggatgctcactgttgacaacaggaggtctggaggcactcttgtcgtcaagtcttgctgagactggagtgggaatgaaaggtggactggagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Remorin_C

Protein Analysis

140

Amino Acids

15.17

Weight (kDa)

4.76

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000099)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11340 AT1G11340 AT1G11340 AT1G11410 AT1G11410 AT1G11410 AT1G11410
fragaria_vesca FvH4_3g03230 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03241 FvH4_3g03242 FvH4_3g03243 FvH4_3g03300 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03310 FvH4_3g03310 FvH4_6g07960
malus_domestica MD00G1203200.v1.1 MD02G1260900.v1.1 MD05G1263100.v1.1 MD05G1332300.v1.1 MD05G1332400.v1.1 MD05G1332600.v1.1 MD05G1332700.v1.1 MD05G1333400.v1.1 MD05G1333500.v1.1 MD05G1333700.v1.1 MD05G1334000.v1.1 MD10G1291100.v1.1 MD10G1291200.v1.1 MD10G1307900.v1.1 MD10G1308000.v1.1 MD10G1308200.v1.1 MD10G1308700.v1.1 MD17G1273200.v1.1
prunus_persica Prupe.4G031200_v2.0.a1 Prupe.4G031400_v2.0.a1 Prupe.4G031500_v2.0.a1 Prupe.4G031600_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.8G238600_v2.0.a1
pyrus_communis pycom02g22290 pycom02g22300 pycom05g30390 pycom05g30430 pycom05g30450 pycom05g30470 pycom05g30510 pycom05g30530 pycom05g30560 pycom05g30570 pycom10g24330 pycom10g25940 pycom10g25950 pycom10g25960 pycom10g25970 pycom10g25980 pycom10g25990 pycom10g26000 pycom10g26010 pycom10g26020 pycom10g26030 pycom17g27160
rosa_chinensis RchiOBHm_Chr2g0119951 RchiOBHm_Chr2g0119961 RchiOBHm_Chr2g0119981 RchiOBHm_Chr2g0120011 RchiOBHm_Chr2g0120061 RchiOBHm_Chr2g0120071 RchiOBHm_Chr3g0477341 RchiOBHm_Chr4g0411711 RchiOBHm_Chr4g0411831 RchiOBHm_Chr4g0411951 RchiOBHm_Chr5g0004871 RchiOBHm_Chr5g0004881 RchiOBHm_Chr5g0004891 RchiOBHm_Chr5g0004921 RchiOBHm_Chr5g0004931 RchiOBHm_Chr5g0004941 RchiOBHm_Chr5g0004961 RchiOBHm_Chr5g0004971 RchiOBHm_Chr5g0004991 RchiOBHm_Chr5g0005011 RchiOBHm_Chr5g0005031 RchiOBHm_Chr5g0005041 RchiOBHm_Chr5g0005051 RchiOBHm_Chr5g0034351 RchiOBHm_Chr5g0034371 RchiOBHm_Chr5g0035421 RchiOBHm_Chr5g0035471 RchiOBHm_Chr5g0035541 RchiOBHm_Chr5g0035551 RchiOBHm_Chr5g0035581 RchiOBHm_Chr5g0035651 RchiOBHm_Chr5g0035661 RchiOBHm_Chr5g0035791 RchiOBHm_Chr5g0035821 RchiOBHm_Chr5g0035881 RchiOBHm_Chr5g0035941 RchiOBHm_Chr5g0066181
rosa_laevigata RLG00000008339 RLG00000018505 RLG00000018510 RLG00000018738 RLG00000018741 RLG00000023265 RLG00000031268 RLG00000031270 RLG00000031272 RLG00000031274 RLG00000031275 RLG00000031278 RLG00000031280 RLG00000031281 RLG00000031282 RLG00000032920 RLG00000033622 RLG00000033628 RLG00000033641
rosa_multiflora Rmu_co8015890.1_g000001 Rmu_co8119476.1_g000001 Rmu_co8172744.1_g000001 Rmu_co8181302.1_g000001 Rmu_co8369629.1_g000001 Rmu_co8379407.1_g000001 Rmu_co8412887.1_g000001 Rmu_sc0000084.1_g000011 Rmu_sc0000084.1_g000012 Rmu_sc0000084.1_g000031 Rmu_sc0000593.1_g000007 Rmu_sc0000593.1_g000011 Rmu_sc0000593.1_g000014 Rmu_sc0000657.1_g000020 Rmu_sc0000711.1_g000010 Rmu_sc0000711.1_g000048 Rmu_sc0000813.1_g000017 Rmu_sc0001493.1_g000041 Rmu_sc0002935.1_g000014 Rmu_sc0002935.1_g000019 Rmu_sc0003096.1_g000002 Rmu_sc0003096.1_g000009 Rmu_sc0003096.1_g000010 Rmu_sc0003096.1_g000014 Rmu_sc0003541.1_g000052 Rmu_sc0004315.1_g000002 Rmu_sc0006173.1_g000007 Rmu_sc0006173.1_g000035 Rmu_sc0006369.1_g000003 Rmu_sc0007790.1_g000002 Rmu_sc0009702.1_g000001 Rmu_sc0009702.1_g000002 Rmu_sc0009702.1_g000004 Rmu_sc0009702.1_g000006 Rmu_sc0010714.1_g000001 Rmu_sc0010714.1_g000002 Rmu_sc0010714.1_g000007 Rmu_sc0010714.1_g000008 Rmu_sc0010714.1_g000009 Rmu_sc0011169.1_g000008 Rmu_sc0013877.1_g000001 Rmu_sc0013932.1_g000001 Rmu_sc0015231.1_g000005 Rmu_sc0016543.1_g000002 Rmu_sc0016543.1_g000003 Rmu_sc0017275.1_g000001 Rmu_sc0026861.1_g000001 Rmu_sc0030606.1_g000001
rosa_roxburghii Rroxscaffold_1G00044840 Rroxscaffold_1G00044850 Rroxscaffold_1G00044900 Rroxscaffold_1G00044980 Rroxscaffold_1G00044990 Rroxscaffold_1G00070600 Rroxscaffold_1G00070610 Rroxscaffold_1G00070630 Rroxscaffold_1G00070650 Rroxscaffold_1G00070680 Rroxscaffold_1G00070700 Rroxscaffold_1G00070710 Rroxscaffold_1G00070740 Rroxscaffold_1G00070750 Rroxscaffold_2G00123770 Rroxscaffold_2G00123820 Rroxscaffold_2G00123830 Rroxscaffold_2G00123900 Rroxscaffold_2G00123920 Rroxscaffold_4G00293110 Rroxscaffold_5G00353540 Rroxscaffold_5G00353620
rosa_rugosa Rorug01G0307800 Rorug02G0225800 Rorug02G0225900 Rorug04G0414800 Rorug04G0414800 Rorug04G0414800 Rorug04G0414900 Rorug04G0415000 Rorug05G0151600
rosa_samantha Rh3DG237000 Rh4BG166800 Rh5BG042300 Rh5CG045900 Rh5CG046000 Rh5CG046100 Rh5CG046200 Rh5CG046300 Rh5CG046400 Rh5CG046500 Rh5CG046600 Rh5CG046800 Rh5CG047000 Rh5CG047100 Rh5CG047300 Rh5CG047500 Rh5CG047600 Rh5CG267500 Rh5CG276200
rosa_wichuraiana Rw0G000290 Rw0G007740 Rw0G022180 Rw1G002050 Rw2G022580 Rw2G022600 Rw2G022620 Rw2G022650 Rw2G022660 Rw4G014100 Rw4G014220 Rw5G004100 Rw5G004110 Rw5G004120 Rw5G004130 Rw5G004140 Rw5G004160 Rw5G004170 Rw5G016790 Rw5G021680 Rw5G022380 Rw5G022450 Rw5G022470 Rw5G022490 Rw5G022540 Rw5G022570 Rw5G050160 Rw7G005200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 53, 178
AcsI RAATTY 1 cut(s) 73
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 79
AluBI AGCT 3 cut(s) 13, 244, 316
AluI AGCT 3 cut(s) 13, 244, 316
Alw26I GTCTC 1 cut(s) 383
Ama87I CYCGRG 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 2 cut(s) 122, 123
AvaI CYCGRG 1 cut(s) 121
AvaII GGWCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 162
BccI CCATC 3 cut(s) 28, 32, 194
BcgI CGANNNNNNTGC 2 cut(s) 354, 388
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 2 cut(s) 122, 123
BcoDI GTCTC 1 cut(s) 383
BfmI CTRYAG 1 cut(s) 251
BisI GCNGC 2 cut(s) 54, 176
BlsI GCNGC 2 cut(s) 55, 177
BmcAI AGTACT 1 cut(s) 137
Bme1390I CCNGG 2 cut(s) 122, 123
Bme18I GGWCC 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 2 cut(s) 122, 123
BmsI GCATC 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 86
BpmI CTGGAG 2 cut(s) 380, 414
BpuEI CTTGAG 2 cut(s) 26, 113
BpuMI CCSGG 2 cut(s) 122, 123
BsaJI CCNNGG 2 cut(s) 121, 324
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse1I ACTGG 2 cut(s) 397, 420
BseDI CCNNGG 2 cut(s) 121, 324
BseGI GGATG 6 cut(s) 39, 43, 136, 205, 280, 338
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 3 cut(s) 34, 77, 378
BseNI ACTGG 2 cut(s) 397, 420
BseRI GAGGAG 2 cut(s) 23, 176
BseXI GCAGC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 121
BsiSI CCGG 2 cut(s) 122, 128
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 138
BsoBI CYCGRG 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 25, 318
BspACI CCGC 2 cut(s) 53, 178
BspCNI CTCAG 3 cut(s) 33, 78, 379
BspLI GGNNCC 1 cut(s) 126
BspMAI CTGCAG 1 cut(s) 255
BsrI ACTGG 2 cut(s) 397, 420
BssECI CCNNGG 2 cut(s) 121, 324
BssMI GATC 2 cut(s) 25, 318
BssT1I CCWWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 342
BstAPI GCANNNNNTGC 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 3 cut(s) 20, 86, 387
BstF5I GGATG 6 cut(s) 39, 43, 136, 205, 280, 338
BstKTI GATC 2 cut(s) 28, 321
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 2 cut(s) 25, 318
BstMWI GCNNNNNNNGC 3 cut(s) 10, 175, 250
BstSCI CCNGG 2 cut(s) 120, 121
BstSFI CTRYAG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 86
BtsCI GGATG 6 cut(s) 39, 43, 136, 205, 280, 338
BtsIMutI CAGTG 2 cut(s) 28, 338
Cac8I GCNNGC 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 125
Cfr9I CCCGGG 1 cut(s) 121
Csp6I GTAC 1 cut(s) 136
CviJI RGCY 6 cut(s) 13, 91, 120, 244, 288, 316
CviKI_1 RGCY 6 cut(s) 13, 91, 120, 244, 288, 316
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 3 cut(s) 20, 86, 387
DpnI GATC 2 cut(s) 27, 320
DpnII GATC 2 cut(s) 25, 318
Eco130I CCWWGG 1 cut(s) 324
Eco24I GRGCYC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 324
FaiI YATR 2 cut(s) 30, 206
FaqI GGGAC 1 cut(s) 138
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 2 cut(s) 54, 176
FokI GGATG 6 cut(s) 46, 50, 143, 212, 287, 345
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 2 cut(s) 54, 176
GluI GCNGC 2 cut(s) 54, 176
GsuI CTGGAG 2 cut(s) 380, 414
HapII CCGG 2 cut(s) 122, 128
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 4 cut(s) 16, 82, 95, 113
HpaII CCGG 2 cut(s) 122, 128
Hpy166II GTNNAC 2 cut(s) 345, 413
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 359
Hpy8I GTNNAC 2 cut(s) 345, 413
HpyAV CCTTC 2 cut(s) 202, 323
HpyCH4III ACNGT 1 cut(s) 342
HpyCH4V TGCA 3 cut(s) 61, 169, 253
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 175, 250
HpyF3I CTNAG 3 cut(s) 20, 86, 387
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 2 cut(s) 25, 318
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 116, 135, 141, 239, 336, 344, 378, 401
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 1 cut(s) 323
MalI GATC 2 cut(s) 27, 320
MboI GATC 2 cut(s) 25, 318
MboII GAAGA 1 cut(s) 91
MfeI CAATTG 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 2 cut(s) 73, 156
MlyI GAGTC 3 cut(s) 10, 76, 104
MnlI CCTC 5 cut(s) 35, 81, 154, 347, 355
MspI CCGG 2 cut(s) 122, 128
MspR9I CCNGG 2 cut(s) 122, 123
MunI CAATTG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 10, 175, 250
NciI CCSGG 2 cut(s) 122, 123
NdeII GATC 2 cut(s) 25, 318
NlaIV GGNNCC 1 cut(s) 126
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 2 cut(s) 55, 177
PleI GAGTC 3 cut(s) 10, 76, 103
PpsI GAGTC 3 cut(s) 10, 76, 103
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 125
PstI CTGCAG 1 cut(s) 255
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SatI GCNGC 2 cut(s) 54, 176
Sau3AI GATC 2 cut(s) 25, 318
Sau96I GGNCC 1 cut(s) 125
ScaI AGTACT 1 cut(s) 137
SchI GAGTC 3 cut(s) 10, 76, 104
ScrFI CCNGG 2 cut(s) 122, 123
SduI GDGCHC 1 cut(s) 122
SetI ASST 5 cut(s) 15, 246, 318, 358, 412
SfaNI GCATC 1 cut(s) 323
SfcI CTRYAG 1 cut(s) 251
SinI GGWCC 1 cut(s) 125
SmaI CCCGGG 1 cut(s) 123
SmlI CTYRAG 2 cut(s) 5, 92
SmoI CTYRAG 2 cut(s) 5, 92
Sse9I AATT 2 cut(s) 73, 156
SsiI CCGC 2 cut(s) 53, 178
SspI AATATT 1 cut(s) 298
StyD4I CCNGG 2 cut(s) 120, 121
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 342
TaqI TCGA 1 cut(s) 116
TasI AATT 2 cut(s) 73, 156
TatI WGTACW 1 cut(s) 135
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 1 cut(s) 113
TscAI CASTG 2 cut(s) 28, 345
TseI GCWGC 1 cut(s) 175
TspDTI ATGAA 3 cut(s) 221, 291, 419
TspMI CCCGGG 1 cut(s) 121
TspRI CASTG 2 cut(s) 28, 345
VpaK11BI GGWCC 1 cut(s) 125
XapI RAATTY 1 cut(s) 73
XmaI CCCGGG 1 cut(s) 121
ZrmI AGTACT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.