Rh5BG042300

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
3183504 .. 3183896
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG042300.1

Sequence Viewer

Length: 393 bp
ATGGACCATGGTAAGAACCTGTACCTCACATCGTGGAACTCAAACAATGACCCTGGAACGGGGAATTGCTCATTAACAACAGAACCATATGGATCCCCTCAGATAATATTGTACAACAATCATGCTAAGTGGTGGCGGTTATGTGAACGCAATGCTGTTTTTGTGAGCGAGTCACCTAAGATAAGCAGGCGAAGCAGCAATGATACATTTGACATAATCCTTGTGAAGAATGAAGATGAGATTACGAGGACATGGGCTGTTCTTGACCATTCGGTTTTCTCAATAATAGTGATATCTGGGTCTGATACATCCGCATCAGTTAAACAGCTAGCAAGGCAGGGAAAGCAGCAGGGGTGGGTTGTCGTTTGGTCAGCACCAACGGGATGTCTGTGA

Protein Analysis

130

Amino Acids

14.56

Weight (kDa)

6.81

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000099)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11340 AT1G11340 AT1G11340 AT1G11410 AT1G11410 AT1G11410 AT1G11410
fragaria_vesca FvH4_3g03230 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03231 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03240 FvH4_3g03241 FvH4_3g03242 FvH4_3g03243 FvH4_3g03300 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03301 FvH4_3g03310 FvH4_3g03310 FvH4_6g07960
malus_domestica MD00G1203200.v1.1 MD02G1260900.v1.1 MD05G1263100.v1.1 MD05G1332300.v1.1 MD05G1332400.v1.1 MD05G1332600.v1.1 MD05G1332700.v1.1 MD05G1333400.v1.1 MD05G1333500.v1.1 MD05G1333700.v1.1 MD05G1334000.v1.1 MD10G1291100.v1.1 MD10G1291200.v1.1 MD10G1307900.v1.1 MD10G1308000.v1.1 MD10G1308200.v1.1 MD10G1308700.v1.1 MD17G1273200.v1.1
prunus_persica Prupe.4G031200_v2.0.a1 Prupe.4G031400_v2.0.a1 Prupe.4G031500_v2.0.a1 Prupe.4G031600_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.4G031800_v2.0.a1 Prupe.8G238600_v2.0.a1
pyrus_communis pycom02g22290 pycom02g22300 pycom05g30390 pycom05g30430 pycom05g30450 pycom05g30470 pycom05g30510 pycom05g30530 pycom05g30560 pycom05g30570 pycom10g24330 pycom10g25940 pycom10g25950 pycom10g25960 pycom10g25970 pycom10g25980 pycom10g25990 pycom10g26000 pycom10g26010 pycom10g26020 pycom10g26030 pycom17g27160
rosa_chinensis RchiOBHm_Chr2g0119951 RchiOBHm_Chr2g0119961 RchiOBHm_Chr2g0119981 RchiOBHm_Chr2g0120011 RchiOBHm_Chr2g0120061 RchiOBHm_Chr2g0120071 RchiOBHm_Chr3g0477341 RchiOBHm_Chr4g0411711 RchiOBHm_Chr4g0411831 RchiOBHm_Chr4g0411951 RchiOBHm_Chr5g0004871 RchiOBHm_Chr5g0004881 RchiOBHm_Chr5g0004891 RchiOBHm_Chr5g0004921 RchiOBHm_Chr5g0004931 RchiOBHm_Chr5g0004941 RchiOBHm_Chr5g0004961 RchiOBHm_Chr5g0004971 RchiOBHm_Chr5g0004991 RchiOBHm_Chr5g0005011 RchiOBHm_Chr5g0005031 RchiOBHm_Chr5g0005041 RchiOBHm_Chr5g0005051 RchiOBHm_Chr5g0034351 RchiOBHm_Chr5g0034371 RchiOBHm_Chr5g0035421 RchiOBHm_Chr5g0035471 RchiOBHm_Chr5g0035541 RchiOBHm_Chr5g0035551 RchiOBHm_Chr5g0035581 RchiOBHm_Chr5g0035651 RchiOBHm_Chr5g0035661 RchiOBHm_Chr5g0035791 RchiOBHm_Chr5g0035821 RchiOBHm_Chr5g0035881 RchiOBHm_Chr5g0035941 RchiOBHm_Chr5g0066181
rosa_laevigata RLG00000008339 RLG00000018505 RLG00000018510 RLG00000018738 RLG00000018741 RLG00000023265 RLG00000031268 RLG00000031270 RLG00000031272 RLG00000031274 RLG00000031275 RLG00000031278 RLG00000031280 RLG00000031281 RLG00000031282 RLG00000032920 RLG00000033622 RLG00000033628 RLG00000033641
rosa_multiflora Rmu_co8015890.1_g000001 Rmu_co8119476.1_g000001 Rmu_co8172744.1_g000001 Rmu_co8181302.1_g000001 Rmu_co8369629.1_g000001 Rmu_co8379407.1_g000001 Rmu_co8412887.1_g000001 Rmu_sc0000084.1_g000011 Rmu_sc0000084.1_g000012 Rmu_sc0000084.1_g000031 Rmu_sc0000593.1_g000007 Rmu_sc0000593.1_g000011 Rmu_sc0000593.1_g000014 Rmu_sc0000657.1_g000020 Rmu_sc0000711.1_g000010 Rmu_sc0000711.1_g000048 Rmu_sc0000813.1_g000017 Rmu_sc0001493.1_g000041 Rmu_sc0002935.1_g000014 Rmu_sc0002935.1_g000019 Rmu_sc0003096.1_g000002 Rmu_sc0003096.1_g000009 Rmu_sc0003096.1_g000010 Rmu_sc0003096.1_g000014 Rmu_sc0003541.1_g000052 Rmu_sc0004315.1_g000002 Rmu_sc0006173.1_g000007 Rmu_sc0006173.1_g000035 Rmu_sc0006369.1_g000003 Rmu_sc0007790.1_g000002 Rmu_sc0009702.1_g000001 Rmu_sc0009702.1_g000002 Rmu_sc0009702.1_g000004 Rmu_sc0009702.1_g000006 Rmu_sc0010714.1_g000001 Rmu_sc0010714.1_g000002 Rmu_sc0010714.1_g000007 Rmu_sc0010714.1_g000008 Rmu_sc0010714.1_g000009 Rmu_sc0011169.1_g000008 Rmu_sc0013877.1_g000001 Rmu_sc0013932.1_g000001 Rmu_sc0015231.1_g000005 Rmu_sc0016543.1_g000002 Rmu_sc0016543.1_g000003 Rmu_sc0017275.1_g000001 Rmu_sc0026861.1_g000001 Rmu_sc0030606.1_g000001
rosa_roxburghii Rroxscaffold_1G00044840 Rroxscaffold_1G00044850 Rroxscaffold_1G00044900 Rroxscaffold_1G00044980 Rroxscaffold_1G00044990 Rroxscaffold_1G00070600 Rroxscaffold_1G00070610 Rroxscaffold_1G00070630 Rroxscaffold_1G00070650 Rroxscaffold_1G00070680 Rroxscaffold_1G00070700 Rroxscaffold_1G00070710 Rroxscaffold_1G00070740 Rroxscaffold_1G00070750 Rroxscaffold_2G00123770 Rroxscaffold_2G00123820 Rroxscaffold_2G00123830 Rroxscaffold_2G00123900 Rroxscaffold_2G00123920 Rroxscaffold_4G00293110 Rroxscaffold_5G00353540 Rroxscaffold_5G00353620
rosa_rugosa Rorug01G0307800 Rorug02G0225800 Rorug02G0225900 Rorug04G0414800 Rorug04G0414800 Rorug04G0414800 Rorug04G0414900 Rorug04G0415000 Rorug05G0151600
rosa_samantha Rh3DG237000 Rh4BG166800 Rh5BG042300 Rh5CG045900 Rh5CG046000 Rh5CG046100 Rh5CG046200 Rh5CG046300 Rh5CG046400 Rh5CG046500 Rh5CG046600 Rh5CG046800 Rh5CG047000 Rh5CG047100 Rh5CG047300 Rh5CG047500 Rh5CG047600 Rh5CG267500 Rh5CG276200
rosa_wichuraiana Rw0G000290 Rw0G007740 Rw0G022180 Rw1G002050 Rw2G022580 Rw2G022600 Rw2G022620 Rw2G022650 Rw2G022660 Rw4G014100 Rw4G014220 Rw5G004100 Rw5G004110 Rw5G004120 Rw5G004130 Rw5G004140 Rw5G004160 Rw5G004170 Rw5G016790 Rw5G021680 Rw5G022380 Rw5G022450 Rw5G022470 Rw5G022490 Rw5G022540 Rw5G022570 Rw5G050160 Rw7G005200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 136, 312
AclWI GGATC 2 cut(s) 87, 100
AdeI CACNNNGTG 1 cut(s) 33
AfaI GTAC 2 cut(s) 23, 113
AfiI CCNNNNNNNGG 2 cut(s) 58, 59
AjnI CCWGG 1 cut(s) 52
AluBI AGCT 1 cut(s) 328
AluI AGCT 1 cut(s) 328
AlwI GGATC 2 cut(s) 87, 100
ApeKI GCWGC 2 cut(s) 195, 346
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 165
AsuNHI GCTAGC 1 cut(s) 328
AvaII GGWCC 1 cut(s) 4
BamHI GGATCC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 207, 358
BciT130I CCWGG 1 cut(s) 54
BfaI CTAG 1 cut(s) 329
BisI GCNGC 2 cut(s) 196, 347
BlsI GCNGC 2 cut(s) 197, 348
Bme1390I CCNGG 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 54
BmsI GCATC 1 cut(s) 323
BmtI GCTAGC 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 7, 52
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 59
Bse3DI GCAATG 2 cut(s) 157, 205
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 2 cut(s) 7, 52
BseGI GGATG 2 cut(s) 308, 389
BseLI CCNNNNNNNGG 2 cut(s) 58, 59
BseMI GCAATG 2 cut(s) 157, 205
BseMII CTCAG 1 cut(s) 113
BseXI GCAGC 2 cut(s) 207, 358
BslI CCNNNNNNNGG 2 cut(s) 58, 59
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 1 cut(s) 92
Bsp19I CCATGG 1 cut(s) 7
BspACI CCGC 2 cut(s) 136, 312
BspCNI CTCAG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 94
BspOI GCTAGC 1 cut(s) 332
BspPI GGATC 2 cut(s) 87, 100
BsrDI GCAATG 2 cut(s) 157, 205
BsrGI TGTACA 1 cut(s) 111
BssECI CCNNGG 2 cut(s) 7, 52
BssMI GATC 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 54
BstAUI TGTACA 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 188, 330
BstDEI CTNAG 3 cut(s) 99, 126, 177
BstDSI CCRYGG 1 cut(s) 7
BstF5I GGATG 2 cut(s) 308, 389
BstKTI GATC 1 cut(s) 95
BstMBI GATC 1 cut(s) 92
BstMWI GCNNNNNNNGC 3 cut(s) 192, 334, 343
BstNI CCWGG 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 52
BstV1I GCAGC 2 cut(s) 207, 358
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BtgI CCRYGG 1 cut(s) 7
BtsCI GGATG 2 cut(s) 308, 389
Cac8I GCNNGC 2 cut(s) 188, 330
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 22, 112
CviAII CATG 3 cut(s) 8, 122, 252
CviJI RGCY 2 cut(s) 257, 328
CviKI_1 RGCY 2 cut(s) 257, 328
CviQI GTAC 2 cut(s) 22, 112
DdeI CTNAG 3 cut(s) 99, 126, 177
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
DraIII CACNNNGTG 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 7
Eco32I GATATC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 52
EcoRV GATATC 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 7
ErhI CCWWGG 1 cut(s) 7
FaeI CATG 3 cut(s) 11, 125, 255
FaiI YATR 7 cut(s) 9, 88, 90, 123, 142, 215, 253
FatI CATG 3 cut(s) 7, 121, 251
FauNDI CATATG 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 196, 347
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 2 cut(s) 196, 347
FspBI CTAG 1 cut(s) 329
GluI GCNGC 2 cut(s) 196, 347
Hin1II CATG 3 cut(s) 11, 125, 255
HinfI GANTC 1 cut(s) 170
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 2 cut(s) 102, 304
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 3 cut(s) 192, 334, 343
HpyF3I CTNAG 3 cut(s) 99, 126, 177
Hsp92II CATG 3 cut(s) 11, 125, 255
Kzo9I GATC 1 cut(s) 92
LpnPI CCDG 7 cut(s) 32, 39, 66, 172, 282, 323, 335
Lsp1109I GCAGC 2 cut(s) 207, 358
LweI GCATC 1 cut(s) 323
MaeI CTAG 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 171
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 2 cut(s) 238, 245
MflI RGATCY 1 cut(s) 92
MluCI AATT 1 cut(s) 64
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 3 cut(s) 35, 108, 240
MseI TTAA 2 cut(s) 74, 321
MspR9I CCNGG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 54
MwoI GCNNNNNNNGC 3 cut(s) 192, 334, 343
NcoI CCATGG 1 cut(s) 7
NdeI CATATG 1 cut(s) 88
NdeII GATC 1 cut(s) 92
NheI GCTAGC 1 cut(s) 328
NlaIII CATG 3 cut(s) 11, 125, 255
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 171
PkrI GCNGC 2 cut(s) 197, 348
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 92
RsaI GTAC 2 cut(s) 23, 113
RsaNI GTAC 2 cut(s) 22, 112
SaqAI TTAA 2 cut(s) 74, 321
SatI GCNGC 2 cut(s) 196, 347
Sau3AI GATC 1 cut(s) 92
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 54
SetI ASST 4 cut(s) 21, 27, 178, 330
SfaNI GCATC 1 cut(s) 323
SinI GGWCC 1 cut(s) 4
Sse9I AATT 1 cut(s) 64
SsiI CCGC 2 cut(s) 136, 312
SspI AATATT 1 cut(s) 108
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 1 cut(s) 52
StyI CCWWGG 1 cut(s) 7
TasI AATT 1 cut(s) 64
TatI WGTACW 1 cut(s) 111
Tru1I TTAA 2 cut(s) 74, 321
Tru9I TTAA 2 cut(s) 74, 321
TseFI GTSAC 1 cut(s) 171
TseI GCWGC 2 cut(s) 195, 346
Tsp45I GTSAC 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 4
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.