AT1G48145

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000264
Physical Location & Seq
Reverse (-)
17784507 .. 17784913
407 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48145.1

Sequence Viewer

Length: 354 bp
ATGAAGCAGAGAAGGAAGATGCTGATGGAAGGATCAATGCATGAGAAGTTTGCTTCTGGATGCACGAATGGAGATGAAACAAGAAAAGCATATAAGCATAAGGTTCTGAAGTCATCTGATGAGTCAAACATTCACATCGCTGTAGGGGATGGAAATGAGGGACAGGATTGTTGTTTGCTTCATGATGATAGCATCAGAAGTGAAGAAACTATGAAATCCAATGAGCAGTACTCTGAAAAGGGAAACAATGATTTTGGTGAAGGTGATGTTGATAACAATGACAAGACTGATAAGAGATTTCAAGAGCTGAATGTGCTAGCATTGTCGATAGAGGAGCGTATTCTTAAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

117

Amino Acids

13.27

Weight (kDa)

5.22

Isoelectric Point (pI)

57.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 128
AfaI GTAC 1 cut(s) 230
AflII CTTAAG 1 cut(s) 344
AgsI TTSAA 1 cut(s) 302
AluBI AGCT 1 cut(s) 307
AluI AGCT 1 cut(s) 307
AlwI GGATC 1 cut(s) 40
AsuHPI GGTGA 2 cut(s) 269, 275
AsuNHI GCTAGC 1 cut(s) 316
BccI CCATC 2 cut(s) 19, 143
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 141
BfrI CTTAAG 1 cut(s) 344
BmcAI AGTACT 1 cut(s) 230
BmsI GCATC 3 cut(s) 9, 50, 201
BmtI GCTAGC 1 cut(s) 320
BplI GAGNNNNNCTC 2 cut(s) 215, 247
BseGI GGATG 2 cut(s) 65, 154
BseRI GAGGAG 1 cut(s) 347
BslFI GGGAC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 174
Bsp143I GATC 1 cut(s) 32
BspHI TCATGA 1 cut(s) 181
BspOI GCTAGC 1 cut(s) 320
BspPI GGATC 1 cut(s) 40
BspTI CTTAAG 1 cut(s) 344
BssMI GATC 1 cut(s) 32
BstAFI CTTAAG 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 318
BstF5I GGATG 2 cut(s) 65, 154
BstKTI GATC 1 cut(s) 35
BstMBI GATC 1 cut(s) 32
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 141
BtgZI GCGATG 1 cut(s) 121
BtsCI GGATG 2 cut(s) 65, 154
Cac8I GCNNGC 1 cut(s) 318
CciI TCATGA 1 cut(s) 181
Csp6I GTAC 1 cut(s) 229
CviAII CATG 2 cut(s) 41, 182
CviJI RGCY 1 cut(s) 307
CviKI_1 RGCY 1 cut(s) 307
CviQI GTAC 1 cut(s) 229
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 128
EcoT22I ATGCAT 1 cut(s) 42
FaeI CATG 2 cut(s) 44, 185
FaiI YATR 7 cut(s) 42, 91, 93, 99, 183, 212, 352
FaqI GGGAC 1 cut(s) 174
FatI CATG 2 cut(s) 40, 181
FokI GGATG 2 cut(s) 72, 161
FspBI CTAG 1 cut(s) 317
Hin1II CATG 2 cut(s) 44, 185
HinfI GANTC 1 cut(s) 122
HphI GGTGA 2 cut(s) 269, 275
Hpy188I TCNGA 4 cut(s) 108, 118, 197, 235
Hpy188III TCNNGA 3 cut(s) 57, 182, 302
HpyAV CCTTC 3 cut(s) 6, 23, 254
HpyCH4V TGCA 2 cut(s) 40, 63
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
Hsp92II CATG 2 cut(s) 44, 185
Kzo9I GATC 1 cut(s) 32
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 2 cut(s) 42, 149
LweI GCATC 3 cut(s) 9, 50, 201
MaeI CTAG 1 cut(s) 317
MalI GATC 1 cut(s) 34
MboI GATC 1 cut(s) 32
MboII GAAGA 2 cut(s) 28, 215
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 2 cut(s) 151, 325
Mph1103I ATGCAT 1 cut(s) 42
MseI TTAA 1 cut(s) 345
MspCI CTTAAG 1 cut(s) 344
MwoI GCNNNNNNNGC 1 cut(s) 313
NdeII GATC 1 cut(s) 32
NheI GCTAGC 1 cut(s) 316
NlaIII CATG 2 cut(s) 44, 185
NsiI ATGCAT 1 cut(s) 42
PagI TCATGA 1 cut(s) 181
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SaqAI TTAA 1 cut(s) 345
Sau3AI GATC 1 cut(s) 32
ScaI AGTACT 1 cut(s) 230
SchI GAGTC 1 cut(s) 131
SetI ASST 3 cut(s) 105, 265, 309
SfaNI GCATC 3 cut(s) 9, 50, 201
SfcI CTRYAG 1 cut(s) 141
SgeI CNNG 9 cut(s) 53, 69, 76, 93, 176, 194, 295, 314, 329
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SspMI CTAG 1 cut(s) 317
TaqI TCGA 1 cut(s) 326
TatI WGTACW 1 cut(s) 228
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TspDTI ATGAA 4 cut(s) 17, 90, 170, 227
Vha464I CTTAAG 1 cut(s) 344
XspI CTAG 1 cut(s) 317
ZrmI AGTACT 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.