Rmu_co8247247.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8247247.1
OG0000264
Physical Location & Seq
Forward (+)
1 .. 758
758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8247247.1_g000001.1.cds

Sequence Viewer

Length: 715 bp
ccccggagtgatcaatcttgggcagccaagattggctcgatgggacaaagtaaatggtgtggaagttgaaaacttgaggagggttttagactccgccggagatggtttcaagtggcgtccttatgccttgaccactgaaaactggcagttgcctaaatactatcctgaagaggaaatgcatgtatcagattgttcaggtttggatgatgagttgcattcatttttcagatgcttgagggcctgtgagctgtctggatttggtactcttgagcagtaccttccgcatagagtagcaatgcagcttggatttgatcaagacattccatgtgttgtcgctcgatccaatcagagttctgatatagcttggagtcattacatcaagaaatttgggaatgcaagtttatatgttccatccagatttttgaaggcagatataagcacaagatacttgaagtggtggaaggaatcaatgttgggtctcaaaaagactatcacgccaaaagtaaagaaatcaaagtgtattggaggatcacaaatgagggctaaaccatcccctgtacatcctggttctgcccccaagaaagctgtagaaggatctaagaaatggaagaagaatcatgatttcatcgttcctcctgaaaatttggagctgctttcaaaaggaaggaatgaagtagaatggaagccgaaggttcaatggatgaagatggactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

237

Amino Acids

27.19

Weight (kDa)

9.4

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 94, 282
AclWI GGATC 3 cut(s) 334, 536, 602
AcsI RAATTY 2 cut(s) 384, 641
AcuI CTGAAG 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 116
AfaI GTAC 3 cut(s) 263, 276, 559
AgsI TTSAA 6 cut(s) 69, 110, 425, 452, 658, 696
AjnI CCWGG 1 cut(s) 563
AluBI AGCT 5 cut(s) 248, 302, 363, 585, 650
AluI AGCT 5 cut(s) 248, 302, 363, 585, 650
Alw26I GTCTC 1 cut(s) 483
AlwI GGATC 3 cut(s) 334, 536, 602
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 3 cut(s) 23, 299, 650
ApoI RAATTY 2 cut(s) 384, 641
AspS9I GGNCC 1 cut(s) 238
AsuC2I CCSGG 1 cut(s) 4
BbvI GCAGC 3 cut(s) 35, 311, 637
BccI CCATC 5 cut(s) 34, 96, 419, 557, 701
BciT130I CCWGG 1 cut(s) 565
BclI TGATCA 2 cut(s) 10, 311
BcnI CCSGG 1 cut(s) 4
BcoDI GTCTC 1 cut(s) 483
BfmI CTRYAG 1 cut(s) 586
BisI GCNGC 3 cut(s) 24, 300, 651
BlsI GCNGC 3 cut(s) 25, 301, 652
Bme1390I CCNGG 2 cut(s) 4, 565
BmgT120I GGNCC 1 cut(s) 238
BmrFI CCNGG 2 cut(s) 4, 565
BmsI GCATC 1 cut(s) 219
BpuEI CTTGAG 3 cut(s) 95, 254, 288
BpuMI CCSGG 1 cut(s) 4
BsaHI GRCGYC 1 cut(s) 116
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 2
Bse1I ACTGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 301
BseBI CCWGG 1 cut(s) 565
BseDI CCNNGG 1 cut(s) 2
BseGI GGATG 5 cut(s) 209, 411, 549, 560, 706
BseMI GCAATG 1 cut(s) 301
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 3 cut(s) 35, 311, 637
BshFI GGCC 1 cut(s) 240
BsiSI CCGG 2 cut(s) 4, 97
BslFI GGGAC 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 483
BsmFI GGGAC 1 cut(s) 57
BsmI GAATGC 2 cut(s) 215, 398
BsnI GGCC 1 cut(s) 240
Bso31I GGTCTC 1 cut(s) 483
Bsp1407I TGTACA 1 cut(s) 557
Bsp143I GATC 5 cut(s) 10, 311, 339, 528, 594
BspACI CCGC 2 cut(s) 94, 282
BspANI GGCC 1 cut(s) 240
BspHI TCATGA 1 cut(s) 617
BspPI GGATC 3 cut(s) 334, 536, 602
BspTNI GGTCTC 1 cut(s) 483
BsrDI GCAATG 1 cut(s) 301
BsrGI TGTACA 1 cut(s) 557
BsrI ACTGG 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 2
BssMI GATC 5 cut(s) 10, 311, 339, 528, 594
BssNI GRCGYC 1 cut(s) 116
Bst2UI CCWGG 1 cut(s) 565
Bst6I CTCTTC 1 cut(s) 163
BstACI GRCGYC 1 cut(s) 116
BstAUI TGTACA 1 cut(s) 557
BstDEI CTNAG 1 cut(s) 598
BstF5I GGATG 5 cut(s) 209, 411, 549, 560, 706
BstKTI GATC 5 cut(s) 13, 314, 342, 531, 597
BstMAI GTCTC 1 cut(s) 483
BstMBI GATC 5 cut(s) 10, 311, 339, 528, 594
BstNI CCWGG 1 cut(s) 565
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 2 cut(s) 2, 563
BstSFI CTRYAG 1 cut(s) 586
BstV1I GCAGC 3 cut(s) 35, 311, 637
BstX2I RGATCY 1 cut(s) 594
BstYI RGATCY 1 cut(s) 594
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 5 cut(s) 209, 411, 549, 560, 706
BtsIMutI CAGTG 1 cut(s) 133
CciI TCATGA 1 cut(s) 617
Cfr13I GGNCC 1 cut(s) 238
CseI GACGC 1 cut(s) 105
Csp6I GTAC 3 cut(s) 262, 275, 558
CviAII CATG 3 cut(s) 180, 325, 618
CviQI GTAC 3 cut(s) 262, 275, 558
DdeI CTNAG 1 cut(s) 598
DpnI GATC 5 cut(s) 12, 313, 341, 530, 596
DpnII GATC 5 cut(s) 10, 311, 339, 528, 594
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
EciI GGCGGA 1 cut(s) 83
Eco31I GGTCTC 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 563
EcoT22I ATGCAT 1 cut(s) 181
FaeI CATG 3 cut(s) 183, 328, 621
FaiI YATR 9 cut(s) 124, 181, 286, 326, 360, 404, 406, 435, 619
FaqI GGGAC 1 cut(s) 57
FatI CATG 3 cut(s) 179, 324, 617
FbaI TGATCA 2 cut(s) 10, 311
Fnu4HI GCNGC 3 cut(s) 24, 300, 651
FokI GGATG 4 cut(s) 216, 398, 536, 547
Fsp4HI GCNGC 3 cut(s) 24, 300, 651
GluI GCNGC 3 cut(s) 24, 300, 651
HaeIII GGCC 1 cut(s) 240
HapII CCGG 2 cut(s) 4, 97
HgaI GACGC 1 cut(s) 105
Hin1I GRCGYC 1 cut(s) 116
Hin1II CATG 3 cut(s) 183, 328, 621
HinfI GANTC 4 cut(s) 90, 368, 465, 614
HpaII CCGG 2 cut(s) 4, 97
Hpy188I TCNGA 4 cut(s) 188, 228, 349, 356
Hpy188III TCNNGA 8 cut(s) 165, 253, 267, 315, 380, 415, 618, 636
HpyAV CCTTC 6 cut(s) 288, 419, 455, 585, 658, 683
HpyCH4V TGCA 4 cut(s) 179, 215, 299, 396
HpyF3I CTNAG 1 cut(s) 598
Hsp92I GRCGYC 1 cut(s) 116
Hsp92II CATG 3 cut(s) 183, 328, 621
Ksp22I TGATCA 2 cut(s) 10, 311
Kzo9I GATC 5 cut(s) 10, 311, 339, 528, 594
LmnI GCTCC 1 cut(s) 647
Lsp1109I GCAGC 3 cut(s) 35, 311, 637
LweI GCATC 1 cut(s) 219
MalI GATC 5 cut(s) 12, 313, 341, 530, 596
MboI GATC 5 cut(s) 10, 311, 339, 528, 594
MboII GAAGA 3 cut(s) 180, 620, 623
MflI RGATCY 1 cut(s) 594
MluCI AATT 2 cut(s) 384, 641
MlyI GAGTC 2 cut(s) 84, 377
MnlI CCTC 7 cut(s) 70, 73, 164, 229, 519, 532, 643
Mph1103I ATGCAT 1 cut(s) 181
MspI CCGG 2 cut(s) 4, 97
MspR9I CCNGG 2 cut(s) 4, 565
Mva1269I GAATGC 2 cut(s) 215, 398
MvaI CCWGG 1 cut(s) 565
NciI CCSGG 1 cut(s) 4
NdeII GATC 5 cut(s) 10, 311, 339, 528, 594
NlaIII CATG 3 cut(s) 183, 328, 621
NsiI ATGCAT 1 cut(s) 181
NspI RCATGY 1 cut(s) 183
PagI TCATGA 1 cut(s) 617
PctI GAATGC 2 cut(s) 215, 398
PfeI GAWTC 2 cut(s) 465, 614
PkrI GCNGC 3 cut(s) 25, 301, 652
PleI GAGTC 2 cut(s) 84, 376
PpsI GAGTC 2 cut(s) 84, 376
Psp6I CCWGG 1 cut(s) 563
PspGI CCWGG 1 cut(s) 563
PspPI GGNCC 1 cut(s) 238
PsuI RGATCY 1 cut(s) 594
RsaI GTAC 3 cut(s) 263, 276, 559
RsaNI GTAC 3 cut(s) 262, 275, 558
SatI GCNGC 3 cut(s) 24, 300, 651
Sau3AI GATC 5 cut(s) 10, 311, 339, 528, 594
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 2 cut(s) 84, 377
ScrFI CCNGG 2 cut(s) 4, 565
SetI ASST 8 cut(s) 200, 250, 280, 304, 365, 587, 652, 694
SfaNI GCATC 1 cut(s) 219
SfcI CTRYAG 1 cut(s) 586
SmlI CTYRAG 3 cut(s) 74, 233, 267
SmoI CTYRAG 3 cut(s) 74, 233, 267
Sse9I AATT 2 cut(s) 384, 641
SsiI CCGC 2 cut(s) 94, 282
StyD4I CCNGG 2 cut(s) 2, 563
TaqI TCGA 2 cut(s) 38, 338
TasI AATT 2 cut(s) 384, 641
TatI WGTACW 1 cut(s) 557
TfiI GAWTC 2 cut(s) 465, 614
TscAI CASTG 1 cut(s) 140
TseI GCWGC 3 cut(s) 23, 299, 650
TspDTI ATGAA 3 cut(s) 208, 614, 685
TspRI CASTG 1 cut(s) 140
XapI RAATTY 2 cut(s) 384, 641
XceI RCATGY 1 cut(s) 183
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.