Rmu_sc0038346.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038346.1
OG0000264
Physical Location & Seq
Forward (+)
2 .. 544
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038346.1_g000001.1.cds

Sequence Viewer

Length: 543 bp
atgaaaggtgggagtgatttggagcatgaggcatttcttgtgttctggttgtctaggtatgtttttcatgatgctcgtaattcagtgaacaaggctgtgttttccattgcaattcgtttagctagagggactcggattgcgcttgcgcctgctgttcttgcaaacatttatagagatttgggtatgttgaagaggagtattgcagcttcgaatgggttgaaagtgacgatcaagtcgccattccatttggttcaggtttgggcttgggagagatttctggaacttcggccaaggccaaatggtatcagaaatgctgagccgagattggctcgatgggataaagtacttggtctaaatattgttggaaacttgaggagagttttggattcggcgggagaaggtttcttgtggcgcccttatgccattgccattgagaactggaaacttcccaagtattttgtggagaaggagaagtgggtagtggttggtcccagtttgaatgatgatgaactgctgtcattttcgatatgcctgagggaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

180

Amino Acids

20.61

Weight (kDa)

9.99

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 232
AccB1I GGYRCC 1 cut(s) 411
AciI CCGC 1 cut(s) 392
AcoI YGGCCR 1 cut(s) 287
AcyI GRCGYC 1 cut(s) 412
AfaI GTAC 1 cut(s) 345
AgsI TTSAA 3 cut(s) 190, 220, 499
AluBI AGCT 2 cut(s) 122, 206
AluI AGCT 2 cut(s) 122, 206
AoxI GGCC 2 cut(s) 287, 293
ApeKI GCWGC 1 cut(s) 203
AspLEI GCGC 3 cut(s) 142, 148, 414
AspS9I GGNCC 1 cut(s) 488
AsuII TTCGAA 1 cut(s) 209
AvaII GGWCC 1 cut(s) 488
AxyI CCTNAGG 1 cut(s) 533
BanI GGYRCC 1 cut(s) 411
BarI GAAGNNNNNNTAC 2 cut(s) 190, 222
BbvI GCAGC 1 cut(s) 215
BccI CCATC 1 cut(s) 327
BfaI CTAG 2 cut(s) 54, 123
BfoI RGCGCY 1 cut(s) 415
BisI GCNGC 1 cut(s) 204
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 205
BmcAI AGTACT 1 cut(s) 345
Bme18I GGWCC 1 cut(s) 488
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 2 cut(s) 413, 490
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 1 cut(s) 61
BmuI ACTGGG 1 cut(s) 486
BplI GAGNNNNNCTC 2 cut(s) 313, 345
Bpu1102I GCTNAGC 1 cut(s) 315
Bpu14I TTCGAA 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 391
BsaHI GRCGYC 1 cut(s) 412
BsaJI CCNNGG 1 cut(s) 290
Bse1I ACTGG 2 cut(s) 443, 492
Bse21I CCTNAGG 1 cut(s) 533
Bse3DI GCAATG 2 cut(s) 105, 423
BseDI CCNNGG 1 cut(s) 290
BseMI GCAATG 2 cut(s) 105, 423
BseMII CTCAG 2 cut(s) 306, 524
BseNI ACTGG 2 cut(s) 443, 492
BseRI GAGGAG 2 cut(s) 208, 388
BseXI GCAGC 1 cut(s) 215
BshFI GGCC 2 cut(s) 289, 295
BshNI GGYRCC 1 cut(s) 411
BslFI GGGAC 2 cut(s) 142, 474
BsmFI GGGAC 2 cut(s) 142, 474
BsnI GGCC 2 cut(s) 289, 295
Bsp119I TTCGAA 1 cut(s) 209
Bsp143I GATC 1 cut(s) 228
Bsp1720I GCTNAGC 1 cut(s) 315
BspACI CCGC 1 cut(s) 392
BspANI GGCC 2 cut(s) 289, 295
BspCNI CTCAG 2 cut(s) 307, 525
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 413, 490
BspT104I TTCGAA 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 411
BsrDI GCAATG 2 cut(s) 105, 423
BsrI ACTGG 2 cut(s) 443, 492
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 1 cut(s) 228
BssNI GRCGYC 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 185
BstACI GRCGYC 1 cut(s) 412
BstBI TTCGAA 1 cut(s) 209
BstC8I GCNNGC 2 cut(s) 144, 150
BstDEI CTNAG 2 cut(s) 315, 533
BstH2I RGCGCY 1 cut(s) 415
BstHHI GCGC 3 cut(s) 142, 148, 414
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 215
Bsu36I CCTNAGG 1 cut(s) 533
BsuRI GGCC 2 cut(s) 289, 295
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 2 cut(s) 144, 150
CciI TCATGA 1 cut(s) 67
CfoI GCGC 3 cut(s) 142, 148, 414
Cfr13I GGNCC 1 cut(s) 488
Csp6I GTAC 1 cut(s) 344
CviAII CATG 2 cut(s) 26, 68
CviJI RGCY 8 cut(s) 95, 122, 206, 263, 289, 295, 319, 329
CviKI_1 RGCY 8 cut(s) 95, 122, 206, 263, 289, 295, 319, 329
CviQI GTAC 1 cut(s) 344
DdeI CTNAG 2 cut(s) 315, 533
DinI GGCGCC 1 cut(s) 413
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
DrdI GACNNNNNNGTC 1 cut(s) 232
DseDI GACNNNNNNGTC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 287
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 290
Eco47I GGWCC 1 cut(s) 488
Eco81I CCTNAGG 1 cut(s) 533
EcoT14I CCWWGG 1 cut(s) 290
EgeI GGCGCC 1 cut(s) 413
EheI GGCGCC 1 cut(s) 413
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 2 cut(s) 29, 71
FaiI YATR 7 cut(s) 27, 60, 69, 171, 185, 420, 529
FaqI GGGAC 2 cut(s) 142, 474
FatI CATG 2 cut(s) 25, 67
FauI CCCGC 1 cut(s) 385
Fnu4HI GCNGC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 2 cut(s) 54, 123
GlaI GCGC 3 cut(s) 141, 147, 413
GluI GCNGC 1 cut(s) 204
HaeII RGCGCY 1 cut(s) 415
HaeIII GGCC 2 cut(s) 289, 295
HhaI GCGC 3 cut(s) 142, 148, 414
Hin1I GRCGYC 1 cut(s) 412
Hin1II CATG 2 cut(s) 29, 71
Hin6I GCGC 3 cut(s) 140, 146, 412
HinP1I GCGC 3 cut(s) 140, 146, 412
HinfI GANTC 2 cut(s) 130, 386
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 135, 308
Hpy188III TCNNGA 2 cut(s) 68, 278
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 2 cut(s) 392, 460
HpyCH4V TGCA 3 cut(s) 110, 161, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 2 cut(s) 315, 533
Hsp92I GRCGYC 1 cut(s) 412
Hsp92II CATG 2 cut(s) 29, 71
HspAI GCGC 3 cut(s) 140, 146, 412
KasI GGCGCC 1 cut(s) 411
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 6 cut(s) 31, 162, 239, 263, 424, 505
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 1 cut(s) 61
MaeI CTAG 2 cut(s) 54, 123
MaeIII GTNAC 1 cut(s) 223
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 1 cut(s) 202
MluCI AATT 2 cut(s) 79, 111
Mly113I GGCGCC 1 cut(s) 412
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 5 cut(s) 22, 119, 186, 366, 528
MwoI GCNNNNNNNGC 1 cut(s) 158
NarI GGCGCC 1 cut(s) 412
NdeII GATC 1 cut(s) 228
NlaIII CATG 2 cut(s) 29, 71
NlaIV GGNNCC 2 cut(s) 413, 490
NmeAIII GCCGAG 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 223
NspV TTCGAA 1 cut(s) 209
PagI TCATGA 1 cut(s) 67
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 1 cut(s) 205
PleI GAGTC 1 cut(s) 124
PluTI GGCGCC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 124
PspN4I GGNNCC 2 cut(s) 413, 490
PspPI GGNCC 1 cut(s) 488
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 1 cut(s) 228
Sau96I GGNCC 1 cut(s) 488
ScaI AGTACT 1 cut(s) 345
SchI GAGTC 1 cut(s) 124
SetI ASST 6 cut(s) 10, 59, 124, 208, 258, 403
SfaNI GCATC 1 cut(s) 61
SfoI GGCGCC 1 cut(s) 413
SfuI TTCGAA 1 cut(s) 209
SinI GGWCC 1 cut(s) 488
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
Sse9I AATT 2 cut(s) 79, 111
SsiI CCGC 1 cut(s) 392
SspDI GGCGCC 1 cut(s) 411
SspI AATATT 1 cut(s) 358
SspMI CTAG 2 cut(s) 54, 123
StyI CCWWGG 1 cut(s) 290
TaqI TCGA 3 cut(s) 209, 331, 524
TasI AATT 2 cut(s) 79, 111
TatI WGTACW 1 cut(s) 343
TfiI GAWTC 1 cut(s) 386
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 3 cut(s) 17, 56, 522
TspRI CASTG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 488
XcmI CCANNNNNNNNNTGG 1 cut(s) 457
XspI CTAG 2 cut(s) 54, 123
ZrmI AGTACT 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.