RchiOBHm_Chr5g0038371

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000264
Physical Location & Seq
Reverse (-)
32977867 .. 32978316
450 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31700

Sequence Viewer

Length: 450 bp
ATGAATGAAGAGAAAGAAATGGCCATGGTTTCACCAACTGGGGAAGACCCATTTGGCAAAGAGGCCTACTTTCTCAAACCCATTATCCCTAATTCCTCCATTGATGAACCTTTCAAGCTCCCTCAGGGTTTCACCTCCCTCCCACCCCGTTTTGACCCAAAAAACTGGCCATTGAAGCTTCGATTCCGTGGATGGCGTCTCGACCACCAAGACTTACAGACTTGGGTCGCTCACTTGGCCCCTATTCACCAATCTACATGGAAGAAAGCTGGCATCTTTGAAGCCATCTTCAATTCCACGTACCAAATCAAAAGGAAAAAGGATTTGGTTTGTGGGTTTGCTGAGAAATGGTGTTGTGAGACCAACACATTCATTTTTCCATGGGGTGAAGCAACCATCACATTGGAGGATGTTATGGTTTTGGGAGGCTTCTCTGTTTTGGGGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

149

Amino Acids

17.15

Weight (kDa)

5.94

Isoelectric Point (pI)

30.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 91 - 149 2.9e-26 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 21, 167
AcyI GRCGYC 1 cut(s) 196
AfaI GTAC 1 cut(s) 302
AgsI TTSAA 4 cut(s) 115, 175, 281, 292
AjuI GAANNNNNNNTTGG 4 cut(s) 36, 68, 308, 340
AluBI AGCT 3 cut(s) 118, 178, 269
AluI AGCT 3 cut(s) 118, 178, 269
Alw26I GTCTC 2 cut(s) 203, 353
AoxI GGCC 4 cut(s) 21, 63, 167, 237
AspS9I GGNCC 1 cut(s) 238
AsuHPI GGTGA 4 cut(s) 24, 124, 239, 398
AxyI CCTNAGG 1 cut(s) 123
BalI TGGCCA 2 cut(s) 23, 169
BbsI GAAGAC 1 cut(s) 51
BccI CCATC 3 cut(s) 186, 293, 404
BcoDI GTCTC 2 cut(s) 203, 353
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 240
BmrI ACTGGG 1 cut(s) 48
BmsI GCATC 1 cut(s) 282
BmuI ACTGGG 1 cut(s) 48
BoxI GACNNNNGTC 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 3 cut(s) 24, 187, 380
Bse1I ACTGG 2 cut(s) 43, 170
Bse21I CCTNAGG 1 cut(s) 123
BseDI CCNNGG 3 cut(s) 24, 187, 380
BseGI GGATG 2 cut(s) 197, 415
BseMII CTCAG 2 cut(s) 137, 333
BseNI ACTGG 2 cut(s) 43, 170
BshFI GGCC 4 cut(s) 23, 65, 169, 239
BsmAI GTCTC 2 cut(s) 203, 353
BsmBI CGTCTC 1 cut(s) 203
BsnI GGCC 4 cut(s) 23, 65, 169, 239
Bso31I GGTCTC 1 cut(s) 353
Bsp19I CCATGG 2 cut(s) 24, 380
BspANI GGCC 4 cut(s) 23, 65, 169, 239
BspCNI CTCAG 2 cut(s) 136, 334
BspLI GGNNCC 1 cut(s) 240
BspTNI GGTCTC 1 cut(s) 353
BsrI ACTGG 2 cut(s) 43, 170
BssECI CCNNGG 3 cut(s) 24, 187, 380
BssNI GRCGYC 1 cut(s) 196
BssT1I CCWWGG 2 cut(s) 24, 380
Bst6I CTCTTC 1 cut(s) 3
BstACI GRCGYC 1 cut(s) 196
BstBAI YACGTR 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 2 cut(s) 123, 342
BstDSI CCRYGG 3 cut(s) 24, 187, 380
BstF5I GGATG 2 cut(s) 197, 415
BstMAI GTCTC 2 cut(s) 203, 353
BstMWI GCNNNNNNNGC 2 cut(s) 175, 236
BstPAI GACNNNNGTC 1 cut(s) 224
BstV2I GAAGAC 1 cut(s) 51
BstXI CCANNNNNNTGG 2 cut(s) 165, 403
Bsu36I CCTNAGG 1 cut(s) 123
BsuRI GGCC 4 cut(s) 23, 65, 169, 239
BtgI CCRYGG 3 cut(s) 24, 187, 380
BtsCI GGATG 2 cut(s) 197, 415
Cac8I GCNNGC 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 238
CseI GACGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 301
CviAII CATG 3 cut(s) 25, 258, 381
CviJI RGCY 9 cut(s) 23, 65, 118, 169, 178, 239, 269, 284, 429
CviKI_1 RGCY 9 cut(s) 23, 65, 118, 169, 178, 239, 269, 284, 429
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 2 cut(s) 123, 342
EaeI YGGCCR 2 cut(s) 21, 167
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 24, 380
Eco147I AGGCCT 1 cut(s) 65
Eco31I GGTCTC 1 cut(s) 353
Eco81I CCTNAGG 1 cut(s) 123
EcoT14I CCWWGG 2 cut(s) 24, 380
ErhI CCWWGG 2 cut(s) 24, 380
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 3 cut(s) 28, 261, 384
FaiI YATR 4 cut(s) 26, 259, 382, 416
FatI CATG 3 cut(s) 24, 257, 380
FokI GGATG 2 cut(s) 204, 422
HaeIII GGCC 4 cut(s) 23, 65, 169, 239
HgaI GACGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 196
Hin1II CATG 3 cut(s) 28, 261, 384
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 1 cut(s) 183
HphI GGTGA 4 cut(s) 24, 124, 239, 398
Hpy188III TCNNGA 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 236
HpyF3I CTNAG 2 cut(s) 123, 342
HpySE526I ACGT 1 cut(s) 299
Hsp92I GRCGYC 1 cut(s) 196
Hsp92II CATG 3 cut(s) 28, 261, 384
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 4 cut(s) 24, 110, 151, 255
LweI GCATC 1 cut(s) 282
MaeII ACGT 1 cut(s) 299
MboII GAAGA 4 cut(s) 20, 56, 274, 280
MlsI TGGCCA 2 cut(s) 23, 169
MluCI AATT 2 cut(s) 91, 292
MluNI TGGCCA 2 cut(s) 23, 169
MnlI CCTC 7 cut(s) 55, 106, 132, 145, 149, 400, 419
Mox20I TGGCCA 2 cut(s) 23, 169
MscI TGGCCA 2 cut(s) 23, 169
Msp20I TGGCCA 2 cut(s) 23, 169
MwoI GCNNNNNNNGC 2 cut(s) 175, 236
NcoI CCATGG 2 cut(s) 24, 380
NlaIII CATG 3 cut(s) 28, 261, 384
NlaIV GGNNCC 1 cut(s) 240
PceI AGGCCT 1 cut(s) 65
PfeI GAWTC 1 cut(s) 183
Ppu21I YACGTR 1 cut(s) 300
PshAI GACNNNNGTC 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 1 cut(s) 238
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
Sau96I GGNCC 1 cut(s) 238
SetI ASST 6 cut(s) 112, 120, 137, 180, 271, 302
SfaNI GCATC 1 cut(s) 282
Sse9I AATT 2 cut(s) 91, 292
SseBI AGGCCT 1 cut(s) 65
StuI AGGCCT 1 cut(s) 65
StyI CCWWGG 2 cut(s) 24, 380
TaiI ACGT 1 cut(s) 302
TaqI TCGA 2 cut(s) 181, 201
TasI AATT 2 cut(s) 91, 292
TfiI GAWTC 1 cut(s) 183
TspDTI ATGAA 4 cut(s) 17, 21, 120, 361
TspGWI ACGGA 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.