RchiOBHm_Chr5g0038471

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000264
Physical Location & Seq
Forward (+)
33066250 .. 33066750
501 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31710

Sequence Viewer

Length: 501 bp
ATGGACCGTCCACCGGACACCATGGTTGAAGAGAAAGAAGAGCTCATGTTTTCACCAACTGGTGGAGACCCATTTCACAAAATAGCCCATTTTCTGAAACCAATAGTGCCTTCCTCCATTTTTAAGTTCCCTAATGAATCTTTCTCCTCCCTCCCTTCACATTTTGGGCCAAGAGAATGCCCTTTAGAGGTAGAATTCCCTGGGTGGAGAATTCAGCTTCAAGAAGATTGGACTGCTTGGGTTGACCGATTGGCTTCACTTCACCAATCCACATGGAAGAAAGCTGGTATATATGAAGCAATCTTCAACTCGACGTACCAAATTAGAAGAAACACCGAGTTGATATATGGGTTGGCAGAGAAATGGTGTTCTGAAACTAATAGTTTCATTTTTGCATGGGGTGAAGCAACAATCACATTAGAGGATTTGATTGTAATGGGCAGTGGCGGAGCCAGAAATTTAAGTATATTGGGACACGACGATTTCTGCAATAAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

166

Amino Acids

18.99

Weight (kDa)

5.08

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 96 - 147 2.3e-21 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 62
AciI CCGC 1 cut(s) 447
AcsI RAATTY 4 cut(s) 194, 210, 457, 495
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 3 cut(s) 13, 62, 187
AgsI TTSAA 3 cut(s) 29, 221, 307
AjnI CCWGG 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 94, 126
AluBI AGCT 3 cut(s) 43, 217, 284
AluI AGCT 3 cut(s) 43, 217, 284
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 60
AoxI GGCC 1 cut(s) 167
ApoI RAATTY 4 cut(s) 194, 210, 457, 495
AspS9I GGNCC 2 cut(s) 4, 167
AsuHPI GGTGA 3 cut(s) 45, 254, 413
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 167
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 60
BsaJI CCNNGG 3 cut(s) 21, 199, 200
BsaWI WCCGGW 1 cut(s) 13
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 62, 187
Bse1I ACTGG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 3 cut(s) 21, 199, 200
BseLI CCNNNNNNNGG 3 cut(s) 13, 62, 187
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 1 cut(s) 136
BshFI GGCC 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 486
BslI CCNNNNNNNGG 3 cut(s) 13, 62, 187
BsmAI GTCTC 1 cut(s) 60
BsmFI GGGAC 1 cut(s) 486
BsmI GAATGC 1 cut(s) 182
BsnI GGCC 1 cut(s) 169
Bso31I GGTCTC 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 45
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 1 cut(s) 447
BspANI GGCC 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 451
BspQI GCTCTTC 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 60
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 3 cut(s) 21, 199, 200
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 2 cut(s) 24, 33
BstDSI CCRYGG 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 60
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BsuRI GGCC 1 cut(s) 169
BtgI CCRYGG 1 cut(s) 21
BtsI GCAGTG 1 cut(s) 448
BtsIMutI CAGTG 1 cut(s) 448
Cfr13I GGNCC 2 cut(s) 4, 167
Csp6I GTAC 1 cut(s) 316
CviAII CATG 4 cut(s) 22, 46, 273, 396
CviJI RGCY 7 cut(s) 43, 86, 169, 217, 254, 284, 452
CviKI_1 RGCY 7 cut(s) 43, 86, 169, 217, 254, 284, 452
CviQI GTAC 1 cut(s) 316
Eam1104I CTCTTC 2 cut(s) 24, 33
EarI CTCTTC 2 cut(s) 24, 33
EciI GGCGGA 1 cut(s) 462
Ecl136II GAGCTC 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 43
EcoRI GAATTC 2 cut(s) 194, 210
EcoRII CCWGG 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 21
EcoT38I GRGCYC 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 4 cut(s) 25, 49, 276, 399
FaqI GGGAC 1 cut(s) 486
FatI CATG 4 cut(s) 21, 45, 272, 395
FriOI GRGCYC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 169
HapII CCGG 1 cut(s) 14
Hin1II CATG 4 cut(s) 25, 49, 276, 399
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 1 cut(s) 137
HpaII CCGG 1 cut(s) 14
HphI GGTGA 3 cut(s) 45, 254, 413
Hpy166II GTNNAC 2 cut(s) 11, 244
Hpy188I TCNGA 2 cut(s) 96, 373
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 2 cut(s) 11, 244
Hpy99I CGWCG 2 cut(s) 316, 482
HpyAV CCTTC 2 cut(s) 120, 165
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 2 cut(s) 395, 489
HpySE526I ACGT 1 cut(s) 314
Hsp92II CATG 4 cut(s) 25, 49, 276, 399
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 449
LpnPI CCDG 6 cut(s) 27, 45, 186, 213, 270, 466
MaeII ACGT 1 cut(s) 314
MboII GAAGA 6 cut(s) 41, 50, 236, 289, 295, 339
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 5 cut(s) 194, 210, 321, 457, 495
MnlI CCTC 5 cut(s) 124, 157, 161, 181, 415
MseI TTAA 3 cut(s) 123, 461, 499
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 182
MvaI CCWGG 1 cut(s) 201
NcoI CCATGG 1 cut(s) 21
NlaIII CATG 4 cut(s) 25, 49, 276, 399
NlaIV GGNNCC 1 cut(s) 451
PasI CCCWGGG 1 cut(s) 200
PciSI GCTCTTC 1 cut(s) 33
PctI GAATGC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 62
Psp124BI GAGCTC 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 451
PspPI GGNCC 2 cut(s) 4, 167
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SacI GAGCTC 1 cut(s) 45
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 3 cut(s) 123, 461, 499
Sau96I GGNCC 2 cut(s) 4, 167
ScrFI CCNGG 1 cut(s) 201
SduI GDGCHC 1 cut(s) 45
SetI ASST 5 cut(s) 45, 192, 219, 286, 317
SinI GGWCC 1 cut(s) 4
Sse9I AATT 5 cut(s) 194, 210, 321, 457, 495
SsiI CCGC 1 cut(s) 447
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 199
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 1 cut(s) 317
TaqI TCGA 1 cut(s) 311
TaqII GACCGA 1 cut(s) 261
TasI AATT 5 cut(s) 194, 210, 321, 457, 495
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 3 cut(s) 123, 461, 499
Tru9I TTAA 3 cut(s) 123, 461, 499
TscAI CASTG 1 cut(s) 448
TspDTI ATGAA 3 cut(s) 150, 309, 376
TspRI CASTG 1 cut(s) 448
Van91I CCANNNNNTGG 1 cut(s) 62
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 4 cut(s) 194, 210, 457, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.