Rroxscaffold_1G00042440

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000264
Physical Location & Seq
Reverse (-)
60562576 .. 60565617
3042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042440.1

Sequence Viewer

Length: 2154 bp
ATGATTGAAGAGAAAGAAATGGTCATGGTTTCACCAACTGGTGGAGACCCATTTCGCAAAAATGCCTATTTTCTCAAACCCATTCTCCCTGATTCCTCCAATTATGAACCTCCCTTCAATCTCCCTCACTGTTTTTCCTCTCTTGCACCCCGTTTTGACCCAAAAAAGCTAGAGCTTCAATTCCTAGGATGGCGTTCCCACAACCAAGATTTGCAGAGTTGGTTTCTCCACCTGGCTTCTAAGCACCAATCTACATGGAAGAAAGCTGGTGTCTTTGAAGCCATCTTCAATTCCACGTACCAAATCAAAAGAAAAAAGGATTTGGTTTGTGGGTTTGCAGAGAAATGGTGTTGTGAGACCAACACCTTCATTTTTCTATGGGGTGAAGCAACTATCACATTGGAGGATGTTATGGTTTTGGGAGGCTTTTCGGTTTTGGGAGACTCCATTTTAAGTCCTATTGAAAGCAGAGAACTGAAAGAAATAGAAGACAAACTTGAGGAAGAGAGATTTGGACTTTACAATCGCGAGGGTGGGATTAGAGTTGCTTACACACACCTATGGATGAAGAAGTTCATGAAGAGTGGGAGCGAATTAGAGCACGAAGCATTCCTTGTGTTCTGGCTGTCCAGGTATGTTTTCCATAATTCTTTCAATGCAATCAATAAGGCTGTTTTCTCCATTGCAATTCGTCTAGCTAGGGGGATTCGAGTTGCGCTTGCACCAGCTATTCTTTCTCACATTTATAGAGATTTGGGTCTACTCAAAAGGACAATTGCATCTTCAGATAAATTAAATGCCAAGAATGCTTTTGTAAAACTCATAATCAAGTCACAGTTTCAATTAGTTCAGATTTGGGCTTGGGAACGATTTCTGGAACTTAGGCCAAAGCCCAGAGTTATATGCTATGGTGAGCCGAGATTGGCTCGATGGGATAAAGTAGACTGTCTGAATGTTGGAGATATGAGGAGGGTTTTAGACTCAGCAGGTGAAGGTTTCATGTGGCGCCCTTATGCCATGGCCATTAAGAACTGGAATTTTCCTAGATACTATGTTGAAAAGGAAGAGTGGGTGTTGGTTGGTGCAGGCTTGGATGATGAACTATTGTCATTTGCCATGTGCTTGAGGGTGGCTGAGTTAGTTGGATATGATACTATACAGCACTATCTTCCACATAGAGTAGCTCGGCAATTTGGATTTGATCAAGACCTTCCGTGTTCTGTTCCTGGACATAGCCAAAATTATGACAACGCGAAATTGTATATTCCGTCCAGGCTTTCTGAGGCAGATGTTAGCATTAGATACTTAAATTGGTGGAAGGAATCAGTTTCAGGCCTTGAACAGAGACATATGCCATCAAAAAAGAAAGTTAAGAAATCTGTAGACTTGATAAATGATGCCACCATTCCTTGTATTTGTTCTCCAAAGAATTCAGAAGAACTTGAGCAGGTTTCTGCAGGAAGGAATGAGGGTGAATATTCTTTTGGTCCTCCAGGATTTTCTCTCAAAAGGAATAGAATGGAAGCTGGAGATCCTATAGACGAAGATGATCTAACTATATCAGAGGCTTTGAAACTTGGGAAGAAGCTTAAAACTGTTGAAACTAGAAAAAGTACTGACAGTGCAAAGTTATCAAGTCCCGATCAAATCTTTGCATCTTCATCTGCAGATGAAAGTTCTATGAATATTATGAAGTCAAAAATACTGGAGAAAGAAGTTGTGTTGAGTAGTGAAGTGGTGTCTTGGGGAAGTAGAGGTCAGAGGAAACTGGACAAGGTAATCATGAGTAAGGAAAGAAGTCCAAGTAATGACATGGTGAGCATCGTCGGCAACAAATGTCCTAGCAGCTCCTCTTTATCTGATAAATTGGAATGTGGTTGCAGCATGTCTTTATTTGAGAAACTGGAATGTGCTAGCAGCAGTTCATTATTTGAGAAACAAGAATGTACTAGCAGCGGCTCTTTATTTGCAAAACTGGAATGTGCTAGCATCAACCCTTCAATTGCAGATGAAGGTACTTTTGTTAATACTAAGAAGTCTGAAAGATTGGAGAAAGAGGTTCCATTGATTAAAGCTTTGATCTGGGGAGGTAAGGGTAAGAGGAAAATGAAAAAATGTAATGAGAAGCAAGGCAAGAAGCAGCTCCTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

717

Amino Acids

81.49

Weight (kDa)

8.72

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 90 - 440 2.1e-102 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 977
Acc36I ACCTGC 2 cut(s) 977, 1438
AccB1I GGYRCC 1 cut(s) 1005
AccB7I CCANNNNNTGG 1 cut(s) 41
AccI GTMKAC 3 cut(s) 760, 942, 1383
AccII CGCG 2 cut(s) 528, 1253
AciI CCGC 1 cut(s) 1956
AclWI GGATC 1 cut(s) 1526
AcoI YGGCCR 1 cut(s) 1020
AcsI RAATTY 2 cut(s) 1036, 1429
AcuI CTGAAG 1 cut(s) 768
AcyI GRCGYC 1 cut(s) 1006
AfaI GTAC 4 cut(s) 299, 1615, 1948, 2017
AfiI CCNNNNNNNGG 1 cut(s) 41
AjnI CCWGG 5 cut(s) 231, 629, 1225, 1271, 1492
AjuI GAANNNNNNNTTGG 4 cut(s) 495, 527, 1467, 1499
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 4 cut(s) 39, 350, 435, 1339
AlwI GGATC 1 cut(s) 1526
AoxI GGCC 3 cut(s) 884, 1020, 1333
ApeKI GCWGC 5 cut(s) 1845, 1881, 1917, 1953, 2140
ApoI RAATTY 2 cut(s) 1036, 1429
Asp700I GAANNNNTTC 2 cut(s) 572, 870
AspA2I CCTAGG 1 cut(s) 184
AspLEI GCGC 2 cut(s) 718, 1008
AspS9I GGNCC 1 cut(s) 1487
AsuHPI GGTGA 6 cut(s) 24, 395, 923, 1001, 1484, 1828
AsuNHI GCTAGC 2 cut(s) 1913, 1985
AvaII GGWCC 1 cut(s) 1487
AvrII CCTAGG 1 cut(s) 184
BaeI ACNNNNGTAYC 2 cut(s) 2007, 2040
BalI TGGCCA 1 cut(s) 1022
BanI GGYRCC 1 cut(s) 1005
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 603
BbvI GCAGC 4 cut(s) 1857, 1893, 1929, 1965
BccI CCATC 4 cut(s) 183, 290, 924, 1363
BciT130I CCWGG 5 cut(s) 233, 631, 1227, 1273, 1494
BclI TGATCA 1 cut(s) 1201
BcoDI GTCTC 4 cut(s) 39, 350, 435, 1339
BfmI CTRYAG 4 cut(s) 1380, 1455, 1536, 1665
BfoI RGCGCY 1 cut(s) 1009
BfuAI ACCTGC 2 cut(s) 977, 1438
BisI GCNGC 6 cut(s) 1846, 1882, 1918, 1954, 1957, 2141
BlnI CCTAGG 1 cut(s) 184
BlsI GCNGC 6 cut(s) 1847, 1883, 1919, 1955, 1958, 2142
BmcAI AGTACT 1 cut(s) 1615
Bme1390I CCNGG 5 cut(s) 233, 631, 1227, 1273, 1494
Bme18I GGWCC 1 cut(s) 1487
BmgT120I GGNCC 1 cut(s) 1487
BmiI GGNNCC 2 cut(s) 1007, 2061
BmrFI CCNGG 5 cut(s) 233, 631, 1227, 1273, 1494
BmsI GCATC 5 cut(s) 788, 1387, 1664, 1830, 1998
BmtI GCTAGC 2 cut(s) 1917, 1989
BpiI GAAGAC 1 cut(s) 495
BplI GAGNNNNNCTC 2 cut(s) 910, 942
BpmI CTGGAG 3 cut(s) 1476, 1548, 1727
BpuEI CTTGAG 3 cut(s) 518, 1144, 1463
BsaAI YACGTR 1 cut(s) 297
BsaHI GRCGYC 1 cut(s) 1006
BsaI GGTCTC 2 cut(s) 39, 350
BsaJI CCNNGG 2 cut(s) 184, 1017
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse1I ACTGG 6 cut(s) 43, 1037, 1710, 1773, 1908, 1980
Bse3DI GCAATG 1 cut(s) 681
BseBI CCWGG 5 cut(s) 233, 631, 1227, 1273, 1494
BseDI CCNNGG 2 cut(s) 184, 1017
BseGI GGATG 4 cut(s) 194, 412, 570, 1099
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 3 cut(s) 996, 1125, 1272
BseNI ACTGG 6 cut(s) 43, 1037, 1710, 1773, 1908, 1980
BseRI GAGGAG 2 cut(s) 982, 1840
BseXI GCAGC 4 cut(s) 1857, 1893, 1929, 1965
BsgI GTGCAG 1 cut(s) 1104
Bsh1236I CGCG 2 cut(s) 528, 1253
BshFI GGCC 3 cut(s) 886, 1022, 1335
BshNI GGYRCC 1 cut(s) 1005
BsiHKAI GWGCWC 1 cut(s) 603
BslFI GGGAC 1 cut(s) 1623
BslI CCNNNNNNNGG 1 cut(s) 41
BsmAI GTCTC 4 cut(s) 39, 350, 435, 1339
BsmFI GGGAC 1 cut(s) 1623
BsmI GAATGC 2 cut(s) 608, 811
BsnI GGCC 3 cut(s) 886, 1022, 1335
Bso31I GGTCTC 2 cut(s) 39, 350
Bsp1286I GDGCHC 1 cut(s) 603
Bsp143I GATC 5 cut(s) 1201, 1531, 1549, 1642, 2079
Bsp19I CCATGG 1 cut(s) 1017
Bsp68I TCGCGA 1 cut(s) 528
BspACI CCGC 1 cut(s) 1956
BspANI GGCC 3 cut(s) 886, 1022, 1335
BspCNI CTCAG 3 cut(s) 995, 1126, 1273
BspFNI CGCG 2 cut(s) 528, 1253
BspHI TCATGA 2 cut(s) 576, 1782
BspLI GGNNCC 2 cut(s) 1007, 2061
BspMAI CTGCAG 2 cut(s) 1459, 1669
BspMI ACCTGC 2 cut(s) 977, 1438
BspOI GCTAGC 2 cut(s) 1917, 1989
BspPI GGATC 1 cut(s) 1526
BspT107I GGYRCC 1 cut(s) 1005
BspTNI GGTCTC 2 cut(s) 39, 350
BsrDI GCAATG 1 cut(s) 681
BsrI ACTGG 6 cut(s) 43, 1037, 1710, 1773, 1908, 1980
BssECI CCNNGG 2 cut(s) 184, 1017
BssMI GATC 5 cut(s) 1201, 1531, 1549, 1642, 2079
BssNI GRCGYC 1 cut(s) 1006
BssT1I CCWWGG 2 cut(s) 184, 1017
Bst2UI CCWGG 5 cut(s) 233, 631, 1227, 1273, 1494
Bst4CI ACNGT 5 cut(s) 131, 837, 947, 1597, 1622
Bst6I CTCTTC 4 cut(s) 3, 498, 575, 1059
BstACI GRCGYC 1 cut(s) 1006
BstBAI YACGTR 1 cut(s) 297
BstC8I GCNNGC 4 cut(s) 720, 1087, 1915, 1987
BstDEI CTNAG 6 cut(s) 240, 881, 982, 1134, 1281, 2031
BstDSI CCRYGG 1 cut(s) 1017
BstF5I GGATG 4 cut(s) 194, 412, 570, 1099
BstFNI CGCG 2 cut(s) 528, 1253
BstH2I RGCGCY 1 cut(s) 1009
BstHHI GCGC 2 cut(s) 718, 1008
BstKTI GATC 5 cut(s) 1204, 1534, 1552, 1645, 2082
BstMAI GTCTC 4 cut(s) 39, 350, 435, 1339
BstMBI GATC 5 cut(s) 1201, 1531, 1549, 1642, 2079
BstMWI GCNNNNNNNGC 2 cut(s) 806, 1827
BstNI CCWGG 5 cut(s) 233, 631, 1227, 1273, 1494
BstNSI RCATGY 1 cut(s) 1888
BstSCI CCNGG 5 cut(s) 231, 629, 1225, 1271, 1492
BstSFI CTRYAG 4 cut(s) 1380, 1455, 1536, 1665
BstUI CGCG 2 cut(s) 528, 1253
BstV1I GCAGC 4 cut(s) 1857, 1893, 1929, 1965
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 1531
BstYI RGATCY 1 cut(s) 1531
BsuRI GGCC 3 cut(s) 886, 1022, 1335
BtgI CCRYGG 1 cut(s) 1017
BtsCI GGATG 4 cut(s) 194, 412, 570, 1099
BtsIMutI CAGTG 2 cut(s) 127, 1627
BtuMI TCGCGA 1 cut(s) 528
BveI ACCTGC 2 cut(s) 977, 1438
Cac8I GCNNGC 4 cut(s) 720, 1087, 1915, 1987
CciI TCATGA 2 cut(s) 576, 1782
CfoI GCGC 2 cut(s) 718, 1008
Cfr13I GGNCC 1 cut(s) 1487
Csp6I GTAC 4 cut(s) 298, 1614, 1947, 2016
CviAII CATG 9 cut(s) 25, 255, 577, 1000, 1018, 1117, 1783, 1813, 1885
CviQI GTAC 4 cut(s) 298, 1614, 1947, 2016
DdeI CTNAG 6 cut(s) 240, 881, 982, 1134, 1281, 2031
DinI GGCGCC 1 cut(s) 1007
DpnI GATC 5 cut(s) 1203, 1533, 1551, 1644, 2081
DpnII GATC 5 cut(s) 1201, 1531, 1549, 1642, 2079
EaeI YGGCCR 1 cut(s) 1020
Eam1104I CTCTTC 4 cut(s) 3, 498, 575, 1059
EarI CTCTTC 4 cut(s) 3, 498, 575, 1059
Eco130I CCWWGG 2 cut(s) 184, 1017
Eco147I AGGCCT 1 cut(s) 1335
Eco31I GGTCTC 2 cut(s) 39, 350
Eco47I GGWCC 1 cut(s) 1487
Eco57I CTGAAG 1 cut(s) 768
EcoRI GAATTC 1 cut(s) 1429
EcoRII CCWGG 5 cut(s) 231, 629, 1225, 1271, 1492
EcoT14I CCWWGG 2 cut(s) 184, 1017
EgeI GGCGCC 1 cut(s) 1007
EheI GGCGCC 1 cut(s) 1007
ErhI CCWWGG 2 cut(s) 184, 1017
FaeI CATG 9 cut(s) 28, 258, 580, 1003, 1021, 1120, 1786, 1816, 1888
FalI AAGNNNNNCTT 4 cut(s) 480, 512, 597, 629
FaqI GGGAC 1 cut(s) 1623
FatI CATG 9 cut(s) 24, 254, 576, 999, 1017, 1116, 1782, 1812, 1884
FauNDI CATATG 1 cut(s) 1350
FbaI TGATCA 1 cut(s) 1201
FblI GTMKAC 3 cut(s) 760, 942, 1383
Fnu4HI GCNGC 6 cut(s) 1846, 1882, 1918, 1954, 1957, 2141
FokI GGATG 4 cut(s) 201, 419, 577, 1106
Fsp4HI GCNGC 6 cut(s) 1846, 1882, 1918, 1954, 1957, 2141
GlaI GCGC 2 cut(s) 717, 1007
GluI GCNGC 6 cut(s) 1846, 1882, 1918, 1954, 1957, 2141
GsuI CTGGAG 3 cut(s) 1476, 1548, 1727
HaeII RGCGCY 1 cut(s) 1009
HaeIII GGCC 3 cut(s) 886, 1022, 1335
HhaI GCGC 2 cut(s) 718, 1008
Hin1I GRCGYC 1 cut(s) 1006
Hin1II CATG 9 cut(s) 28, 258, 580, 1003, 1021, 1120, 1786, 1816, 1888
Hin6I GCGC 2 cut(s) 716, 1006
HinP1I GCGC 2 cut(s) 716, 1006
HindIII AAGCTT 2 cut(s) 1586, 2073
HinfI GANTC 5 cut(s) 92, 443, 706, 980, 1322
HphI GGTGA 6 cut(s) 24, 395, 923, 1001, 1484, 1828
Hpy166II GTNNAC 3 cut(s) 761, 943, 1384
Hpy188I TCNGA 9 cut(s) 787, 852, 951, 1282, 1435, 1564, 1761, 1861, 2041
Hpy188III TCNNGA 6 cut(s) 527, 577, 875, 1205, 1640, 1783
Hpy8I GTNNAC 3 cut(s) 761, 943, 1384
Hpy99I CGWCG 1 cut(s) 1829
HpyAV CCTTC 8 cut(s) 124, 376, 986, 1220, 1312, 1455, 2006, 2007
HpyCH4III ACNGT 5 cut(s) 131, 837, 947, 1597, 1622
HpyCH4IV ACGT 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 806, 1827
HpyF3I CTNAG 6 cut(s) 240, 881, 982, 1134, 1281, 2031
HpySE526I ACGT 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 1006
Hsp92II CATG 9 cut(s) 28, 258, 580, 1003, 1021, 1120, 1786, 1816, 1888
HspAI GCGC 2 cut(s) 716, 1006
KasI GGCGCC 1 cut(s) 1005
Ksp22I TGATCA 1 cut(s) 1201
Kzo9I GATC 5 cut(s) 1201, 1531, 1549, 1642, 2079
LmnI GCTCC 3 cut(s) 588, 1853, 2148
Lsp1109I GCAGC 4 cut(s) 1857, 1893, 1929, 1965
LweI GCATC 5 cut(s) 788, 1387, 1664, 1830, 1998
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 831
MalI GATC 5 cut(s) 1203, 1533, 1551, 1644, 2081
MboI GATC 5 cut(s) 1201, 1531, 1549, 1642, 2079
MfeI CAATTG 2 cut(s) 774, 2001
MflI RGATCY 1 cut(s) 1531
MhlI GDGCHC 1 cut(s) 603
MlsI TGGCCA 1 cut(s) 1022
MluNI TGGCCA 1 cut(s) 1022
Mly113I GGCGCC 1 cut(s) 1006
MlyI GAGTC 2 cut(s) 437, 974
MmeI TCCRAC 2 cut(s) 937, 1123
Mox20I TGGCCA 1 cut(s) 1022
MroXI GAANNNNTTC 2 cut(s) 572, 870
MscI TGGCCA 1 cut(s) 1022
MseI TTAA 8 cut(s) 452, 794, 1026, 1307, 1371, 1590, 2025, 2070
MslI CAYNNNNRTG 1 cut(s) 559
Msp20I TGGCCA 1 cut(s) 1022
MspA1I CMGCKG 1 cut(s) 1956
MspR9I CCNGG 5 cut(s) 233, 631, 1227, 1273, 1494
MunI CAATTG 2 cut(s) 774, 2001
Mva1269I GAATGC 2 cut(s) 608, 811
MvaI CCWGG 5 cut(s) 233, 631, 1227, 1273, 1494
MvnI CGCG 2 cut(s) 528, 1253
MwoI GCNNNNNNNGC 2 cut(s) 806, 1827
NarI GGCGCC 1 cut(s) 1006
NcoI CCATGG 1 cut(s) 1017
NdeI CATATG 1 cut(s) 1350
NdeII GATC 5 cut(s) 1201, 1531, 1549, 1642, 2079
NheI GCTAGC 2 cut(s) 1913, 1985
NlaIII CATG 9 cut(s) 28, 258, 580, 1003, 1021, 1120, 1786, 1816, 1888
NlaIV GGNNCC 2 cut(s) 1007, 2061
NmeAIII GCCGAG 2 cut(s) 942, 1165
NmuCI GTSAC 1 cut(s) 831
NruI TCGCGA 1 cut(s) 528
NspI RCATGY 1 cut(s) 1888
PagI TCATGA 2 cut(s) 576, 1782
PaqCI CACCTGC 1 cut(s) 977
PceI AGGCCT 1 cut(s) 1335
PctI GAATGC 2 cut(s) 608, 811
PdmI GAANNNNTTC 2 cut(s) 572, 870
PfeI GAWTC 3 cut(s) 92, 706, 1322
PflMI CCANNNNNTGG 1 cut(s) 41
PfoI TCCNGGA 2 cut(s) 1225, 1492
PkrI GCNGC 6 cut(s) 1847, 1883, 1919, 1955, 1958, 2142
PleI GAGTC 2 cut(s) 437, 974
PluTI GGCGCC 1 cut(s) 1009
PpsI GAGTC 2 cut(s) 437, 974
Ppu21I YACGTR 1 cut(s) 297
Psp6I CCWGG 5 cut(s) 231, 629, 1225, 1271, 1492
PspGI CCWGG 5 cut(s) 231, 629, 1225, 1271, 1492
PspN4I GGNNCC 2 cut(s) 1007, 2061
PspPI GGNCC 1 cut(s) 1487
PstI CTGCAG 2 cut(s) 1459, 1669
PsuI RGATCY 1 cut(s) 1531
RruI TCGCGA 1 cut(s) 528
RsaI GTAC 4 cut(s) 299, 1615, 1948, 2017
RsaNI GTAC 4 cut(s) 298, 1614, 1947, 2016
RseI CAYNNNNRTG 1 cut(s) 559
SaqAI TTAA 8 cut(s) 452, 794, 1026, 1307, 1371, 1590, 2025, 2070
SatI GCNGC 6 cut(s) 1846, 1882, 1918, 1954, 1957, 2141
Sau3AI GATC 5 cut(s) 1201, 1531, 1549, 1642, 2079
Sau96I GGNCC 1 cut(s) 1487
ScaI AGTACT 1 cut(s) 1615
SchI GAGTC 2 cut(s) 437, 974
ScrFI CCNGG 5 cut(s) 233, 631, 1227, 1273, 1494
SduI GDGCHC 1 cut(s) 603
SfaNI GCATC 5 cut(s) 788, 1387, 1664, 1830, 1998
SfcI CTRYAG 4 cut(s) 1380, 1455, 1536, 1665
SfoI GGCGCC 1 cut(s) 1007
SinI GGWCC 1 cut(s) 1487
SmiMI CAYNNNNRTG 1 cut(s) 559
SmlI CTYRAG 3 cut(s) 497, 1123, 1442
SmoI CTYRAG 3 cut(s) 497, 1123, 1442
SseBI AGGCCT 1 cut(s) 1335
SsiI CCGC 1 cut(s) 1956
SspDI GGCGCC 1 cut(s) 1005
SspI AATATT 2 cut(s) 1478, 1687
StuI AGGCCT 1 cut(s) 1335
StyD4I CCNGG 5 cut(s) 231, 629, 1225, 1271, 1492
StyI CCWWGG 2 cut(s) 184, 1017
TaaI ACNGT 5 cut(s) 131, 837, 947, 1597, 1622
TaiI ACGT 1 cut(s) 299
TaqI TCGA 2 cut(s) 709, 928
TatI WGTACW 2 cut(s) 1613, 1946
TauI GCSGC 1 cut(s) 1959
TfiI GAWTC 3 cut(s) 92, 706, 1322
Tru1I TTAA 8 cut(s) 452, 794, 1026, 1307, 1371, 1590, 2025, 2070
Tru9I TTAA 8 cut(s) 452, 794, 1026, 1307, 1371, 1590, 2025, 2070
TscAI CASTG 2 cut(s) 134, 1627
TseFI GTSAC 1 cut(s) 831
TseI GCWGC 5 cut(s) 1845, 1881, 1917, 1953, 2140
Tsp45I GTSAC 1 cut(s) 831
TspGWI ACGGA 2 cut(s) 1203, 1257
TspRI CASTG 2 cut(s) 134, 1627
Van91I CCANNNNNTGG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 1487
XapI RAATTY 2 cut(s) 1036, 1429
XceI RCATGY 1 cut(s) 1888
XmaJI CCTAGG 1 cut(s) 184
XmiI GTMKAC 3 cut(s) 760, 942, 1383
XmnI GAANNNNTTC 2 cut(s) 572, 870
ZrmI AGTACT 1 cut(s) 1615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.