Rorug05G0172200

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000264
Physical Location & Seq
Reverse (-)
16060312 .. 16060953
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0172200.1

Sequence Viewer

Length: 642 bp
ATGATGTTCAAGAAGCAGTTTTTCCGTAGCAGAGCATCGCAAAGAGACACAAGCGAACCCCTTCCTCCCACAGTAATCCCAATTGGCAGCGACATGCTTCCCATCAAATTAAGGCTCTTCGCGCTGATCGGTTCTTCTACTAACGGTCCTCCAAGAACAATTATTTATGATGCACCAAACCTCATAACCGAACCACAAATGGTGGTTTCTCTCTCTCGTGTCAAACTATCATACCTAATTAAGCGTGGGTACGCAAAGGTCATGGCTAGGCACCTTTCCGAGATGGGTGTCCCAGAAGCTGAGCAGCTGCTATTATTGTTAAAAATCGGAAAAGTATTTAAGGTGGTTGAAGTGGCTGTCCCTCGGTTGCCTATTACTGTGAGCATAGTGGACGTGACTGTGACTACGCCGGATGAGCCCTCGTTACGCAGATTAACAGCTTGTGTAGAGGCCAATCATCAAGAGATGCTTGATGTTCACGGGCCTCTATGGGAGTTCATGGAAACATTTAGGTCGACGATGCATGTAAGGAGACAGATTGATGCAGTCAAGATAGATTTATTATATGCATTAGTTTTCTGTATCGATCCATGCAGATTAAGCCAAGTTAATCTGATTGAAACCAGTTTTGCTATAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

213

Amino Acids

24.06

Weight (kDa)

9.22

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 270
AccI GTMKAC 1 cut(s) 515
AccII CGCG 1 cut(s) 122
AclWI GGATC 1 cut(s) 581
AfaI GTAC 1 cut(s) 251
AgsI TTSAA 3 cut(s) 10, 350, 620
AjiI CACGTC 1 cut(s) 394
AluBI AGCT 3 cut(s) 299, 307, 440
AluI AGCT 3 cut(s) 299, 307, 440
Alw26I GTCTC 2 cut(s) 39, 526
AlwI GGATC 1 cut(s) 581
AlwNI CAGNNNCTG 1 cut(s) 299
AoxI GGCC 2 cut(s) 450, 482
ApeKI GCWGC 3 cut(s) 87, 304, 307
Asp700I GAANNNNTTC 1 cut(s) 60
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 2 cut(s) 146, 482
AvaII GGWCC 1 cut(s) 146
BanI GGYRCC 1 cut(s) 270
BanII GRGCYC 1 cut(s) 420
BauI CACGAG 1 cut(s) 216
BbvI GCAGC 3 cut(s) 99, 294, 316
BccI CCATC 2 cut(s) 110, 277
BcoDI GTCTC 2 cut(s) 39, 526
BfaI CTAG 1 cut(s) 267
BisI GCNGC 3 cut(s) 88, 305, 308
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 3 cut(s) 89, 306, 309
Bme18I GGWCC 1 cut(s) 146
BmgBI CACGTC 1 cut(s) 394
BmgT120I GGNCC 2 cut(s) 146, 482
BmiI GGNNCC 1 cut(s) 272
BmsI GCATC 5 cut(s) 44, 160, 456, 510, 532
Bpu1102I GCTNAGC 1 cut(s) 300
Bsa29I ATCGAT 1 cut(s) 585
BsaJI CCNNGG 1 cut(s) 362
Bse1I ACTGG 1 cut(s) 624
BseCI ATCGAT 1 cut(s) 585
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 1 cut(s) 418
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 624
BseXI GCAGC 3 cut(s) 99, 294, 316
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 2 cut(s) 452, 484
BshNI GGYRCC 1 cut(s) 270
BshVI ATCGAT 1 cut(s) 585
BsiSI CCGG 1 cut(s) 410
BslFI GGGAC 2 cut(s) 275, 344
BsmAI GTCTC 2 cut(s) 39, 526
BsmFI GGGAC 2 cut(s) 275, 344
BsnI GGCC 2 cut(s) 452, 484
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 2 cut(s) 126, 586
Bsp1720I GCTNAGC 1 cut(s) 300
BspANI GGCC 2 cut(s) 452, 484
BspCNI CTCAG 1 cut(s) 292
BspDI ATCGAT 1 cut(s) 585
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 272
BspPI GGATC 1 cut(s) 581
BspQI GCTCTTC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 270
BsrI ACTGG 1 cut(s) 624
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 2 cut(s) 126, 586
BssSI CACGAG 1 cut(s) 216
Bst2BI CACGAG 1 cut(s) 216
Bst4CI ACNGT 4 cut(s) 73, 146, 379, 400
Bst6I CTCTTC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 418
BstFNI CGCG 1 cut(s) 122
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 2 cut(s) 129, 589
BstMAI GTCTC 2 cut(s) 39, 526
BstMBI GATC 2 cut(s) 126, 586
BstMWI GCNNNNNNNGC 3 cut(s) 121, 415, 600
BstNSI RCATGY 2 cut(s) 97, 527
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 3 cut(s) 99, 294, 316
Bsu15I ATCGAT 1 cut(s) 585
BsuRI GGCC 2 cut(s) 452, 484
BsuTUI ATCGAT 1 cut(s) 585
BtgZI GCGATG 1 cut(s) 21
BtrI CACGTC 1 cut(s) 394
BtsCI GGATG 1 cut(s) 418
CaiI CAGNNNCTG 1 cut(s) 299
CfoI GCGC 1 cut(s) 124
Cfr13I GGNCC 2 cut(s) 146, 482
ClaI ATCGAT 1 cut(s) 585
Csp6I GTAC 1 cut(s) 250
CviAII CATG 5 cut(s) 94, 262, 499, 524, 591
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 300
DpnI GATC 2 cut(s) 128, 588
DpnII GATC 2 cut(s) 126, 586
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 146
EcoT22I ATGCAT 2 cut(s) 525, 571
EcoT38I GRGCYC 1 cut(s) 420
FaeI CATG 5 cut(s) 97, 265, 502, 527, 594
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 2 cut(s) 275, 344
FatI CATG 5 cut(s) 93, 261, 498, 523, 590
FblI GTMKAC 1 cut(s) 515
Fnu4HI GCNGC 3 cut(s) 88, 305, 308
FokI GGATG 1 cut(s) 425
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 3 cut(s) 88, 305, 308
FspBI CTAG 1 cut(s) 267
GlaI GCGC 1 cut(s) 123
GluI GCNGC 3 cut(s) 88, 305, 308
HaeIII GGCC 2 cut(s) 452, 484
HapII CCGG 1 cut(s) 410
HhaI GCGC 1 cut(s) 124
Hin1II CATG 5 cut(s) 97, 265, 502, 527, 594
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HpaII CCGG 1 cut(s) 410
Hpy166II GTNNAC 3 cut(s) 391, 478, 516
Hpy188I TCNGA 3 cut(s) 280, 329, 615
Hpy188III TCNNGA 3 cut(s) 10, 461, 550
Hpy8I GTNNAC 3 cut(s) 391, 478, 516
Hpy99I CGWCG 1 cut(s) 520
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 4 cut(s) 73, 146, 379, 400
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 5 cut(s) 173, 523, 545, 569, 594
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 415, 600
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 5 cut(s) 97, 265, 502, 527, 594
HspAI GCGC 1 cut(s) 122
Kzo9I GATC 2 cut(s) 126, 586
LguI GCTCTTC 1 cut(s) 122
LpnPI CCDG 3 cut(s) 306, 423, 637
Lsp1109I GCAGC 3 cut(s) 99, 294, 316
LweI GCATC 5 cut(s) 44, 160, 456, 510, 532
MaeI CTAG 1 cut(s) 267
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 3 cut(s) 394, 400, 423
MalI GATC 2 cut(s) 128, 588
MboI GATC 2 cut(s) 126, 586
MboII GAAGA 2 cut(s) 109, 126
MfeI CAATTG 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 420
MluCI AATT 4 cut(s) 81, 107, 159, 237
MnlI CCTC 7 cut(s) 75, 159, 191, 372, 430, 442, 495
Mph1103I ATGCAT 2 cut(s) 525, 571
MroXI GAANNNNTTC 1 cut(s) 60
MseI TTAA 7 cut(s) 110, 240, 320, 339, 434, 599, 609
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 1 cut(s) 410
MunI CAATTG 1 cut(s) 81
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 3 cut(s) 121, 415, 600
NdeII GATC 2 cut(s) 126, 586
NlaIII CATG 5 cut(s) 97, 265, 502, 527, 594
NlaIV GGNNCC 1 cut(s) 272
NmuCI GTSAC 2 cut(s) 394, 400
NsiI ATGCAT 2 cut(s) 525, 571
NspI RCATGY 2 cut(s) 97, 527
PciSI GCTCTTC 1 cut(s) 122
PdmI GAANNNNTTC 1 cut(s) 60
PkrI GCNGC 3 cut(s) 89, 306, 309
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 2 cut(s) 146, 482
PstNI CAGNNNCTG 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 307
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SalI GTCGAC 1 cut(s) 514
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 7 cut(s) 110, 240, 320, 339, 434, 599, 609
SatI GCNGC 3 cut(s) 88, 305, 308
Sau3AI GATC 2 cut(s) 126, 586
Sau96I GGNCC 2 cut(s) 146, 482
SduI GDGCHC 1 cut(s) 420
SfaNI GCATC 5 cut(s) 44, 160, 456, 510, 532
SinI GGWCC 1 cut(s) 146
Sse9I AATT 4 cut(s) 81, 107, 159, 237
SspMI CTAG 1 cut(s) 267
TaaI ACNGT 4 cut(s) 73, 146, 379, 400
TaiI ACGT 1 cut(s) 396
TaqI TCGA 2 cut(s) 515, 585
TasI AATT 4 cut(s) 81, 107, 159, 237
Tru1I TTAA 7 cut(s) 110, 240, 320, 339, 434, 599, 609
Tru9I TTAA 7 cut(s) 110, 240, 320, 339, 434, 599, 609
TseFI GTSAC 2 cut(s) 394, 400
TseI GCWGC 3 cut(s) 87, 304, 307
Tsp45I GTSAC 2 cut(s) 394, 400
TspDTI ATGAA 1 cut(s) 487
TspGWI ACGGA 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 146
XceI RCATGY 2 cut(s) 97, 527
XmiI GTMKAC 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 60
XspI CTAG 1 cut(s) 267
Zsp2I ATGCAT 2 cut(s) 525, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.