Rmu_co8236409.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8236409.1
OG0000264
Physical Location & Seq
Forward (+)
7 .. 748
742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8236409.1_g000001.1.cds

Sequence Viewer

Length: 699 bp
atgtttgaagccgttgagcactcccctcactccaaaaggccaaaactttctccctttcctagctgcaaggagactccgccggaaaccatggttgaagagaaagaagacctcatgatttcaccacctggtggacacccatttcacaaaacagcccactatctcaaacccatttcgccttcctcccttttcgagtctttcacctcccatatcccgacctcacccttggacccaaaaaagtggccatcccagcttcagttccgtggatggcgccgcgaccaccaagacttgctgacttgggttcaccacttggcttctactcaccaatccacgtggaagaaagccggcatttacgaacccatcttcaactcgacttaccagataagaagagacaacgacctggtttgtgggtttgcagagaaatggtgttgtgagaccaacaccttcgtttttccatggggtgaaaccacagtcacattggaggatgttatggttttgggaggcttctgtgttttgggagactctattttgagtcctattgaaagcagagagctgaaagaaatagaagagaaacttgagaaagagcgaaaagggctttacgattacagtgggcgtgggtctaaggtggccagcgcagagttatggatgaagaaattcatgaagagcgggagtatgttttccacggcagtcgtgattcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

232

Amino Acids

26.58

Weight (kDa)

6.56

Isoelectric Point (pI)

58.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 267
AccB7I CCANNNNNTGG 1 cut(s) 128
AccBSI CCGCTC 1 cut(s) 663
AccII CGCG 1 cut(s) 273
AciI CCGC 3 cut(s) 77, 271, 663
AcoI YGGCCR 2 cut(s) 239, 624
AcsI RAATTY 1 cut(s) 650
AcuI CTGAAG 1 cut(s) 236
AcvI CACGTG 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 268
AdeI CACNNNGTG 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 4 cut(s) 8, 95, 364, 539
AjnI CCWGG 2 cut(s) 124, 396
AluBI AGCT 3 cut(s) 63, 250, 550
AluI AGCT 3 cut(s) 63, 250, 550
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 4 cut(s) 65, 381, 425, 510
AoxI GGCC 3 cut(s) 38, 239, 624
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 650
Asp700I GAANNNNTTC 1 cut(s) 650
AspLEI GCGC 2 cut(s) 270, 632
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 6 cut(s) 111, 190, 210, 293, 311, 470
AvaII GGWCC 1 cut(s) 226
BalI TGGCCA 2 cut(s) 241, 626
BanI GGYRCC 1 cut(s) 267
BbrPI CACGTG 1 cut(s) 330
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 50
BccI CCATC 3 cut(s) 250, 258, 365
BceAI ACGGC 1 cut(s) 696
BciT130I CCWGG 2 cut(s) 126, 398
BcoDI GTCTC 4 cut(s) 65, 381, 425, 510
BfaI CTAG 1 cut(s) 60
BfoI RGCGCY 1 cut(s) 271
BisI GCNGC 2 cut(s) 64, 271
BlsI GCNGC 2 cut(s) 65, 272
Bme1390I CCNGG 2 cut(s) 126, 398
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 228, 269
BmrFI CCNGG 2 cut(s) 126, 398
BpiI GAAGAC 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 593
BsaAI YACGTR 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 268
BsaI GGTCTC 1 cut(s) 425
BsaJI CCNNGG 5 cut(s) 87, 222, 259, 452, 678
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse118I RCCGGY 1 cut(s) 341
BseBI CCWGG 2 cut(s) 126, 398
BseDI CCNNGG 5 cut(s) 87, 222, 259, 452, 678
BseGI GGATG 4 cut(s) 242, 269, 487, 648
BseLI CCNNNNNNNGG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 50
BseYI CCCAGC 1 cut(s) 246
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 3 cut(s) 40, 241, 626
BshNI GGYRCC 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 2 cut(s) 80, 342
BslI CCNNNNNNNGG 1 cut(s) 128
BsmAI GTCTC 4 cut(s) 65, 381, 425, 510
BsnI GGCC 3 cut(s) 40, 241, 626
Bso31I GGTCTC 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 21
Bsp19I CCATGG 2 cut(s) 87, 452
BspACI CCGC 3 cut(s) 77, 271, 663
BspANI GGCC 3 cut(s) 40, 241, 626
BspFNI CGCG 1 cut(s) 273
BspHI TCATGA 2 cut(s) 111, 654
BspLI GGNNCC 2 cut(s) 228, 269
BspQI GCTCTTC 1 cut(s) 653
BspT107I GGYRCC 1 cut(s) 267
BspTNI GGTCTC 1 cut(s) 425
BsrBI CCGCTC 1 cut(s) 663
BsrFI RCCGGY 1 cut(s) 341
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 5 cut(s) 87, 222, 259, 452, 678
BssNI GRCGYC 1 cut(s) 268
BssT1I CCWWGG 3 cut(s) 87, 222, 452
Bst2UI CCWGG 2 cut(s) 126, 398
Bst4CI ACNGT 2 cut(s) 469, 605
Bst6I CTCTTC 4 cut(s) 90, 379, 558, 653
BstACI GRCGYC 1 cut(s) 268
BstBAI YACGTR 1 cut(s) 330
BstC8I GCNNGC 2 cut(s) 343, 628
BstDEI CTNAG 1 cut(s) 618
BstDSI CCRYGG 4 cut(s) 87, 259, 452, 678
BstF5I GGATG 4 cut(s) 242, 269, 487, 648
BstFNI CGCG 1 cut(s) 273
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 2 cut(s) 270, 632
BstMAI GTCTC 4 cut(s) 65, 381, 425, 510
BstMWI GCNNNNNNNGC 2 cut(s) 247, 589
BstNI CCWGG 2 cut(s) 126, 398
BstSCI CCNGG 2 cut(s) 124, 396
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 237
BsuRI GGCC 3 cut(s) 40, 241, 626
BtgI CCRYGG 4 cut(s) 87, 259, 452, 678
BtsCI GGATG 4 cut(s) 242, 269, 487, 648
BtsIMutI CAGTG 1 cut(s) 610
Cac8I GCNNGC 2 cut(s) 343, 628
CciI TCATGA 2 cut(s) 111, 654
CfoI GCGC 2 cut(s) 270, 632
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 226
CsiI ACCWGGT 2 cut(s) 124, 396
CspCI CAANNNNNGTGG 2 cut(s) 311, 346
CviAII CATG 4 cut(s) 88, 112, 453, 655
DdeI CTNAG 1 cut(s) 618
DinI GGCGCC 1 cut(s) 269
DraIII CACNNNGTG 1 cut(s) 128
EaeI YGGCCR 2 cut(s) 239, 624
Eam1104I CTCTTC 4 cut(s) 90, 379, 558, 653
EarI CTCTTC 4 cut(s) 90, 379, 558, 653
EciI GGCGGA 1 cut(s) 66
Eco130I CCWWGG 3 cut(s) 87, 222, 452
Eco31I GGTCTC 1 cut(s) 425
Eco47I GGWCC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 236
Eco72I CACGTG 1 cut(s) 330
EcoRII CCWGG 2 cut(s) 124, 396
EcoT14I CCWWGG 3 cut(s) 87, 222, 452
EgeI GGCGCC 1 cut(s) 269
EheI GGCGCC 1 cut(s) 269
ErhI CCWWGG 3 cut(s) 87, 222, 452
FaeI CATG 4 cut(s) 91, 115, 456, 658
FaiI YATR 8 cut(s) 89, 113, 207, 454, 488, 640, 656, 671
FalI AAGNNNNNCTT 2 cut(s) 555, 587
FatI CATG 4 cut(s) 87, 111, 452, 654
FauI CCCGC 1 cut(s) 656
Fnu4HI GCNGC 2 cut(s) 64, 271
FokI GGATG 4 cut(s) 229, 276, 494, 655
Fsp4HI GCNGC 2 cut(s) 64, 271
FspBI CTAG 1 cut(s) 60
GlaI GCGC 2 cut(s) 269, 631
GluI GCNGC 2 cut(s) 64, 271
GsaI CCCAGC 1 cut(s) 250
HaeII RGCGCY 1 cut(s) 271
HaeIII GGCC 3 cut(s) 40, 241, 626
HapII CCGG 2 cut(s) 80, 342
HhaI GCGC 2 cut(s) 270, 632
Hin1I GRCGYC 1 cut(s) 268
Hin1II CATG 4 cut(s) 91, 115, 456, 658
Hin6I GCGC 2 cut(s) 268, 630
HinP1I GCGC 2 cut(s) 268, 630
HinfI GANTC 5 cut(s) 73, 191, 518, 529, 691
HpaII CCGG 2 cut(s) 80, 342
HphI GGTGA 6 cut(s) 111, 190, 210, 293, 311, 470
Hpy166II GTNNAC 2 cut(s) 131, 301
Hpy188III TCNNGA 4 cut(s) 112, 211, 655, 688
Hpy8I GTNNAC 2 cut(s) 131, 301
HpyAV CCTTC 2 cut(s) 186, 451
HpyCH4III ACNGT 2 cut(s) 469, 605
HpyCH4IV ACGT 1 cut(s) 329
HpyCH4V TGCA 2 cut(s) 66, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 247, 589
HpyF3I CTNAG 1 cut(s) 618
HpySE526I ACGT 1 cut(s) 329
Hsp92I GRCGYC 1 cut(s) 268
Hsp92II CATG 4 cut(s) 91, 115, 456, 658
HspAI GCGC 2 cut(s) 268, 630
KasI GGCGCC 1 cut(s) 267
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
LguI GCTCTTC 1 cut(s) 653
LpnPI CCDG 9 cut(s) 93, 111, 138, 260, 355, 383, 389, 410, 640
Lsp1109I GCAGC 1 cut(s) 50
MabI ACCWGGT 2 cut(s) 124, 396
MaeI CTAG 1 cut(s) 60
MaeII ACGT 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 469
MbiI CCGCTC 1 cut(s) 663
MboII GAAGA 8 cut(s) 107, 116, 346, 352, 396, 575, 658, 670
MhlI GDGCHC 1 cut(s) 21
MlsI TGGCCA 2 cut(s) 241, 626
MluCI AATT 1 cut(s) 650
MluNI TGGCCA 2 cut(s) 241, 626
Mly113I GGCGCC 1 cut(s) 268
MlyI GAGTC 4 cut(s) 67, 200, 512, 538
MnlI CCTC 7 cut(s) 36, 119, 190, 211, 226, 472, 491
Mox20I TGGCCA 2 cut(s) 241, 626
MroNI GCCGGC 1 cut(s) 341
MroXI GAANNNNTTC 1 cut(s) 650
MscI TGGCCA 2 cut(s) 241, 626
Msp20I TGGCCA 2 cut(s) 241, 626
MspI CCGG 2 cut(s) 80, 342
MspR9I CCNGG 2 cut(s) 126, 398
MvaI CCWGG 2 cut(s) 126, 398
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 247, 589
NaeI GCCGGC 1 cut(s) 343
NarI GGCGCC 1 cut(s) 268
NcoI CCATGG 2 cut(s) 87, 452
NgoMIV GCCGGC 1 cut(s) 341
NlaIII CATG 4 cut(s) 91, 115, 456, 658
NlaIV GGNNCC 2 cut(s) 228, 269
NmuCI GTSAC 1 cut(s) 469
PagI TCATGA 2 cut(s) 111, 654
PciSI GCTCTTC 1 cut(s) 653
PdiI GCCGGC 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 650
PfeI GAWTC 1 cut(s) 691
PflMI CCANNNNNTGG 1 cut(s) 128
PkrI GCNGC 2 cut(s) 65, 272
PleI GAGTC 4 cut(s) 67, 199, 512, 537
PluTI GGCGCC 1 cut(s) 271
PmaCI CACGTG 1 cut(s) 330
PmlI CACGTG 1 cut(s) 330
PpsI GAGTC 4 cut(s) 67, 199, 512, 537
Ppu21I YACGTR 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 124, 396
PspCI CACGTG 1 cut(s) 330
PspFI CCCAGC 1 cut(s) 246
PspGI CCWGG 2 cut(s) 124, 396
PspN4I GGNNCC 2 cut(s) 228, 269
PspPI GGNCC 1 cut(s) 226
SapI GCTCTTC 1 cut(s) 653
SatI GCNGC 2 cut(s) 64, 271
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 4 cut(s) 67, 200, 512, 538
ScrFI CCNGG 2 cut(s) 126, 398
SduI GDGCHC 1 cut(s) 21
SexAI ACCWGGT 2 cut(s) 124, 396
SfoI GGCGCC 1 cut(s) 269
SinI GGWCC 1 cut(s) 226
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
Sse9I AATT 1 cut(s) 650
SsiI CCGC 3 cut(s) 77, 271, 663
SspDI GGCGCC 1 cut(s) 267
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 2 cut(s) 124, 396
StyI CCWWGG 3 cut(s) 87, 222, 452
TaaI ACNGT 2 cut(s) 469, 605
TaiI ACGT 1 cut(s) 332
TaqI TCGA 2 cut(s) 189, 368
TasI AATT 1 cut(s) 650
TauI GCSGC 1 cut(s) 273
TfiI GAWTC 1 cut(s) 691
TscAI CASTG 1 cut(s) 610
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 1 cut(s) 63
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 3 cut(s) 643, 659, 671
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 610
Van91I CCANNNNNTGG 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 226
XapI RAATTY 1 cut(s) 650
XcmI CCANNNNNNNNNTGG 1 cut(s) 472
XmnI GAANNNNTTC 1 cut(s) 650
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.