Rh5BG265500

Plant mobile domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
33187575 .. 33187955
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG265500.1

Sequence Viewer

Length: 381 bp
ATGAAACACAAAAATGTCAAAACTAGAACATGTGGCGACAGTGAGAAGTTATCAGATCAAGTTCAAAATCTGGCATCTTCACCTGCGGAAACTTCTGTTGATACTATGGAGTCAGAGAGATTGAAATCTGGAGGTCCATTGGATGAAGATCGACTAACTTTGTCAGAACTTTTTAAGAATTATACGAAACGCAAAAATGTTGAAATTAGAACATGTGGTGATAGTGAGAAGTTATCAGGTCAAGTTCAAAATCTGGCATCTTCAACTGCAGAAAGTTCTGTTGATACTATTAAGTCAGAGAGATTGGAGACAGAGGATATGTTGAATGAAGTTTTGGTTGGAGGATGCAAGGCCGAGAGACACGGCAAGAAGTTCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

13.99

Weight (kDa)

6.16

Isoelectric Point (pI)

33.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 91
Acc36I ACCTGC 1 cut(s) 91
AciI CCGC 1 cut(s) 86
AflIII ACRYGT 2 cut(s) 29, 212
AgsI TTSAA 6 cut(s) 65, 124, 203, 248, 264, 325
AjuI GAANNNNNNNTTGG 4 cut(s) 317, 321, 349, 353
Alw26I GTCTC 2 cut(s) 302, 352
AoxI GGCC 1 cut(s) 351
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 72, 230
AvaII GGWCC 1 cut(s) 134
BceAI ACGGC 1 cut(s) 379
BcoDI GTCTC 2 cut(s) 302, 352
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 267
BfuAI ACCTGC 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmsI GCATC 3 cut(s) 83, 266, 335
BpmI CTGGAG 1 cut(s) 150
BsaBI GATNNNNATC 2 cut(s) 124, 147
Bse8I GATNNNNATC 2 cut(s) 124, 147
BseGI GGATG 2 cut(s) 148, 350
BseJI GATNNNNATC 2 cut(s) 124, 147
BshFI GGCC 1 cut(s) 353
BsmAI GTCTC 2 cut(s) 302, 352
BsnI GGCC 1 cut(s) 353
Bsp143I GATC 2 cut(s) 55, 148
BspACI CCGC 1 cut(s) 86
BspANI GGCC 1 cut(s) 353
BspMAI CTGCAG 1 cut(s) 271
BspMI ACCTGC 1 cut(s) 91
BssMI GATC 2 cut(s) 55, 148
Bst4CI ACNGT 1 cut(s) 41
BstF5I GGATG 2 cut(s) 148, 350
BstKTI GATC 2 cut(s) 58, 151
BstMAI GTCTC 2 cut(s) 302, 352
BstMBI GATC 2 cut(s) 55, 148
BstNSI RCATGY 2 cut(s) 33, 216
BstSFI CTRYAG 1 cut(s) 267
BsuRI GGCC 1 cut(s) 353
BtsCI GGATG 2 cut(s) 148, 350
BtsIMutI CAGTG 1 cut(s) 46
BveI ACCTGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 134
CviAII CATG 2 cut(s) 30, 213
CviJI RGCY 1 cut(s) 353
CviKI_1 RGCY 1 cut(s) 353
DpnI GATC 2 cut(s) 57, 150
DpnII GATC 2 cut(s) 55, 148
Eco47I GGWCC 1 cut(s) 134
FaeI CATG 2 cut(s) 33, 216
FaiI YATR 5 cut(s) 31, 107, 183, 214, 320
FatI CATG 2 cut(s) 29, 212
FokI GGATG 2 cut(s) 155, 357
FspBI CTAG 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 1 cut(s) 353
Hin1II CATG 2 cut(s) 33, 216
HinfI GANTC 1 cut(s) 110
HphI GGTGA 2 cut(s) 72, 230
Hpy188I TCNGA 5 cut(s) 55, 115, 166, 298, 377
Hpy188III TCNNGA 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 269, 348
Hsp92II CATG 2 cut(s) 33, 216
Kzo9I GATC 2 cut(s) 55, 148
LpnPI CCDG 5 cut(s) 56, 96, 114, 222, 239
LweI GCATC 3 cut(s) 83, 266, 335
MaeI CTAG 1 cut(s) 24
MalI GATC 2 cut(s) 57, 150
MboI GATC 2 cut(s) 55, 148
MboII GAAGA 3 cut(s) 69, 158, 252
MluCI AATT 2 cut(s) 178, 204
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 3 cut(s) 125, 307, 335
MseI TTAA 2 cut(s) 174, 291
MslI CAYNNNNRTG 1 cut(s) 12
NdeII GATC 2 cut(s) 55, 148
NlaIII CATG 2 cut(s) 33, 216
NmeAIII GCCGAG 1 cut(s) 379
NspI RCATGY 2 cut(s) 33, 216
PaqCI CACCTGC 1 cut(s) 91
PciI ACATGT 2 cut(s) 29, 212
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PscI ACATGT 2 cut(s) 29, 212
PspPI GGNCC 1 cut(s) 134
PstI CTGCAG 1 cut(s) 271
RseI CAYNNNNRTG 1 cut(s) 12
SaqAI TTAA 2 cut(s) 174, 291
Sau3AI GATC 2 cut(s) 55, 148
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 1 cut(s) 119
SetI ASST 3 cut(s) 85, 136, 241
SfaNI GCATC 3 cut(s) 83, 266, 335
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 2 cut(s) 178, 204
SsiI CCGC 1 cut(s) 86
SspMI CTAG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 151
TasI AATT 2 cut(s) 178, 204
Tru1I TTAA 2 cut(s) 174, 291
Tru9I TTAA 2 cut(s) 174, 291
TscAI CASTG 1 cut(s) 46
TspDTI ATGAA 3 cut(s) 17, 159, 342
TspRI CASTG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 134
XceI RCATGY 2 cut(s) 33, 216
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.