Rorug05G0174200

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000264
Physical Location & Seq
Reverse (-)
16212007 .. 16213819
1813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0174200.1

Sequence Viewer

Length: 489 bp
ATGGTGGTGAGGCTCCGATTAGCGAGGTTCGGATGCAAGAACCGGCCGTTCTATCGGGTCATGGCGGCCGATAGCCGATCTCCCAGAGACGGCAAGCACCTTGAAGTTTTGGGCTATTACAATCCCTTGCCAGGCCAAGATGGGGGTAAACGAATGGGTCTGAACTTTGATAGAGTGAAGTATTGGCTATCTGTTGGAGCTCAGCCTTCAGATCCTGTGCAGCGCCTTCTTTTCAGGGCAGGATTATTACCTCCAACACCAATGATGGCAATGGCACGTAAGGGTGGGCCACGTGACACACGACCTGTAGATCCTATGAGTGGGCGGATCCTGACTCCTGAGAAGCCAGCCAGTGCTGATGAAGCCAAAGATGCTGAAAACGCTGAAGAAAAAGAAGCTGAAAGTGCTGAAGTTAATGATGGGAGGTTGCAAGAAACGATCTTCCATATCGGCTTGCAGGACAAGCAGCATGGTATTGGTCAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

162

Amino Acids

18.03

Weight (kDa)

9.33

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S16 PF00886 9 - 70 7e-28 Ribosomal protein S16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 65, 325
AclWI GGATC 4 cut(s) 206, 305, 322, 335
AcoI YGGCCR 2 cut(s) 44, 66
AcuI CTGAAG 3 cut(s) 192, 405, 429
AcvI CACGTG 1 cut(s) 293
AfiI CCNNNNNNNGG 4 cut(s) 89, 131, 142, 320
AgsI TTSAA 1 cut(s) 104
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 2 cut(s) 200, 398
AluI AGCT 2 cut(s) 200, 398
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 4 cut(s) 206, 305, 322, 335
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 4 cut(s) 44, 66, 133, 287
ApeKI GCWGC 2 cut(s) 220, 466
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 19
BamHI GGATCC 1 cut(s) 327
BanII GRGCYC 1 cut(s) 202
BbrPI CACGTG 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 232, 478
BccI CCATC 3 cut(s) 134, 259, 413
BceAI ACGGC 2 cut(s) 31, 106
BciT130I CCWGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 306
BfoI RGCGCY 1 cut(s) 226
BisI GCNGC 3 cut(s) 66, 221, 467
BlpI GCTNAGC 1 cut(s) 201
BlsI GCNGC 3 cut(s) 67, 222, 468
Bme1390I CCNGG 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 2 cut(s) 14, 329
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 2 cut(s) 23, 361
Bpu1102I GCTNAGC 1 cut(s) 201
BsaAI YACGTR 2 cut(s) 278, 293
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 131, 142, 320
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 38
BseLI CCNNNNNNNGG 4 cut(s) 89, 131, 142, 320
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 2 cut(s) 215, 330
BseNI ACTGG 1 cut(s) 351
BseX3I CGGCCG 2 cut(s) 44, 66
BseXI GCAGC 2 cut(s) 232, 478
BsgI GTGCAG 1 cut(s) 239
Bsh1285I CGRYCG 2 cut(s) 47, 69
BshFI GGCC 4 cut(s) 46, 68, 135, 289
BsiEI CGRYCG 2 cut(s) 47, 69
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 1 cut(s) 43
BslI CCNNNNNNNGG 4 cut(s) 89, 131, 142, 320
BsmAI GTCTC 1 cut(s) 81
BsmBI CGTCTC 1 cut(s) 81
BsnI GGCC 4 cut(s) 46, 68, 135, 289
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 5 cut(s) 77, 211, 310, 327, 438
Bsp1720I GCTNAGC 1 cut(s) 201
BspACI CCGC 2 cut(s) 65, 325
BspANI GGCC 4 cut(s) 46, 68, 135, 289
BspCNI CTCAG 2 cut(s) 214, 331
BspLI GGNNCC 2 cut(s) 14, 329
BspPI GGATC 4 cut(s) 206, 305, 322, 335
BsrDI GCAATG 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 42
BssMI GATC 5 cut(s) 77, 211, 310, 327, 438
Bst2UI CCWGG 1 cut(s) 132
BstBAI YACGTR 2 cut(s) 278, 293
BstC8I GCNNGC 3 cut(s) 95, 348, 455
BstDEI CTNAG 2 cut(s) 201, 339
BstF5I GGATG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 5 cut(s) 80, 214, 313, 330, 441
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 5 cut(s) 77, 211, 310, 327, 438
BstMCI CGRYCG 2 cut(s) 47, 69
BstMWI GCNNNNNNNGC 5 cut(s) 362, 371, 380, 404, 463
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 232, 478
BstX2I RGATCY 3 cut(s) 211, 310, 327
BstYI RGATCY 3 cut(s) 211, 310, 327
BstZI CGGCCG 2 cut(s) 44, 66
BsuRI GGCC 4 cut(s) 46, 68, 135, 289
BtsCI GGATG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 358
Cac8I GCNNGC 3 cut(s) 95, 348, 455
CaiI CAGNNNCTG 1 cut(s) 215
CfoI GCGC 1 cut(s) 225
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 287
CviAII CATG 2 cut(s) 61, 470
DdeI CTNAG 2 cut(s) 201, 339
DpnI GATC 5 cut(s) 79, 213, 312, 329, 440
DpnII GATC 5 cut(s) 77, 211, 310, 327, 438
EaeI YGGCCR 2 cut(s) 44, 66
EagI CGGCCG 2 cut(s) 44, 66
EciI GGCGGA 1 cut(s) 340
Ecl136II GAGCTC 1 cut(s) 200
EclXI CGGCCG 2 cut(s) 44, 66
Eco24I GRGCYC 1 cut(s) 202
Eco52I CGGCCG 2 cut(s) 44, 66
Eco53kI GAGCTC 1 cut(s) 200
Eco57I CTGAAG 3 cut(s) 192, 405, 429
Eco72I CACGTG 1 cut(s) 293
EcoICRI GAGCTC 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 202
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 2 cut(s) 64, 473
FaiI YATR 5 cut(s) 62, 317, 447, 471, 487
FatI CATG 2 cut(s) 60, 469
Fnu4HI GCNGC 3 cut(s) 66, 221, 467
FokI GGATG 1 cut(s) 45
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 3 cut(s) 66, 221, 467
GlaI GCGC 1 cut(s) 224
GluI GCNGC 3 cut(s) 66, 221, 467
HaeII RGCGCY 1 cut(s) 226
HaeIII GGCC 4 cut(s) 46, 68, 135, 289
HapII CCGG 1 cut(s) 43
HhaI GCGC 1 cut(s) 225
Hin1II CATG 2 cut(s) 64, 473
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HinfI GANTC 1 cut(s) 334
HpaII CCGG 1 cut(s) 43
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 4 cut(s) 17, 32, 162, 211
Hpy188III TCNNGA 2 cut(s) 331, 338
Hpy8I GTNNAC 1 cut(s) 149
HpyAV CCTTC 2 cut(s) 216, 236
HpyCH4IV ACGT 2 cut(s) 277, 292
HpyCH4V TGCA 4 cut(s) 36, 220, 430, 457
HpyF10VI GCNNNNNNNGC 5 cut(s) 362, 371, 380, 404, 463
HpyF3I CTNAG 2 cut(s) 201, 339
HpySE526I ACGT 2 cut(s) 277, 292
Hsp92II CATG 2 cut(s) 64, 473
HspAI GCGC 1 cut(s) 223
Kzo9I GATC 5 cut(s) 77, 211, 310, 327, 438
LmnI GCTCC 2 cut(s) 18, 197
Lsp1109I GCAGC 2 cut(s) 232, 478
LweI GCATC 2 cut(s) 23, 361
MaeII ACGT 2 cut(s) 277, 292
MaeIII GTNAC 1 cut(s) 293
MalI GATC 5 cut(s) 79, 213, 312, 329, 440
MboI GATC 5 cut(s) 77, 211, 310, 327, 438
MboII GAAGA 2 cut(s) 398, 433
MflI RGATCY 3 cut(s) 211, 310, 327
MhlI GDGCHC 1 cut(s) 202
MlyI GAGTC 1 cut(s) 328
MmeI TCCRAC 2 cut(s) 175, 278
MnlI CCTC 4 cut(s) 3, 18, 261, 417
MseI TTAA 1 cut(s) 414
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 5 cut(s) 362, 371, 380, 404, 463
NdeII GATC 5 cut(s) 77, 211, 310, 327, 438
NlaIII CATG 2 cut(s) 64, 473
NlaIV GGNNCC 2 cut(s) 14, 329
NmuCI GTSAC 1 cut(s) 293
PcsI WCGNNNNNNNCGW 1 cut(s) 298
PkrI GCNGC 3 cut(s) 67, 222, 468
PleI GAGTC 1 cut(s) 328
PmaCI CACGTG 1 cut(s) 293
PmlI CACGTG 1 cut(s) 293
PpsI GAGTC 1 cut(s) 328
Ppu21I YACGTR 2 cut(s) 278, 293
Psp124BI GAGCTC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 130
PspCI CACGTG 1 cut(s) 293
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 14, 329
PspPI GGNCC 1 cut(s) 287
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 3 cut(s) 211, 310, 327
SacI GAGCTC 1 cut(s) 202
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 3 cut(s) 66, 221, 467
Sau3AI GATC 5 cut(s) 77, 211, 310, 327, 438
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 1 cut(s) 328
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 202
SetI ASST 9 cut(s) 29, 102, 202, 253, 280, 295, 307, 400, 428
SfaNI GCATC 2 cut(s) 23, 361
SfcI CTRYAG 1 cut(s) 306
SsiI CCGC 2 cut(s) 65, 325
SstI GAGCTC 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 130
TaiI ACGT 2 cut(s) 280, 295
TauI GCSGC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 2 cut(s) 220, 466
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 375
TspRI CASTG 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.