RLG00000033864

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000264
Physical Location & Seq
Forward (+)
33477681 .. 33478684
1004 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033864

Sequence Viewer

Length: 651 bp
ATGTCATTTGCCATGTTTTTGAGGGTGGCTGAGTTAGTTGGATTTGGTACTAGACAGAAATACCTCCCTCATCGAGTGGCTAGGCAATTTGGATTTAATCAAGACCTTCCATGTTCTTCTGTTGCTGGACACAGCCAGAGTTTTGAGAATGCAAAGTTGTACATTCCATCTAGGCTTTCTGAGACAGATACTAGCATGAGATACTTGAGCTGGTGGCAGGAATCAGAGTCACGCCTCGAGCAGAAGAGTATTCCACTGAAATGGAAACCAAAGAAAGCCGTAGAGGGGTCAAAAGAAGCAAACAAGATATTTAAGGCCACCATTGCTTGTGATTATTCTCCAAAGAATTCAGAAAAAGTAGTGCAGGTATCTACAAGAAGGAATGATGATAGTGATAACCTTGTACCTCTAGGATTTCCACCCACATGTAATGAAATGAATGCTGCAGATCCTATGGATGAAGATACACTGTCTATATCAGAAGTTCTGAAATATAGCAAGATAGATAAAACTGTTGAAACCAAGGAAAGTGGTGACTGTGAGAAATTATCTGGTCAAGTTCAAGATTTGGTATATTCAAGTGTGGAAAAAGGTACTGGAAATGCTATGAGGTCGGAGGGAACAAAGAAGGTACTGAAGACTGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

217

Amino Acids

24.24

Weight (kDa)

7.6

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 2 - 73 4.7e-12 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 355
AclWI GGATC 1 cut(s) 443
AcsI RAATTY 1 cut(s) 346
AfaI GTAC 5 cut(s) 49, 161, 405, 595, 633
AfiI CCNNNNNNNGG 1 cut(s) 285
AflIII ACRYGT 1 cut(s) 425
AgsI TTSAA 3 cut(s) 518, 563, 579
AluBI AGCT 2 cut(s) 210, 647
AluI AGCT 2 cut(s) 210, 647
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 1 cut(s) 443
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 1 cut(s) 346
AsuHPI GGTGA 1 cut(s) 545
AvaI CYCGRG 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 644
BbvI GCAGC 1 cut(s) 430
BccI CCATC 1 cut(s) 175
BceAI ACGGC 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 5 cut(s) 51, 81, 171, 192, 410
BfmI CTRYAG 1 cut(s) 444
BfuAI ACCTGC 1 cut(s) 355
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
BmeT110I CYCGRG 1 cut(s) 236
BpiI GAAGAC 1 cut(s) 644
BpuEI CTTGAG 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 522
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse1I ACTGG 1 cut(s) 601
Bse3DI GCAATG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 522
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 2 cut(s) 21, 171
BseNI ACTGG 1 cut(s) 601
BseXI GCAGC 1 cut(s) 430
BsgI GTGCAG 1 cut(s) 383
BshFI GGCC 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 176
BsmI GAATGC 2 cut(s) 154, 445
BsnI GGCC 1 cut(s) 317
BsoBI CYCGRG 1 cut(s) 236
Bsp1407I TGTACA 1 cut(s) 159
Bsp143I GATC 1 cut(s) 448
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 2 cut(s) 22, 172
BspMAI CTGCAG 1 cut(s) 448
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 1 cut(s) 443
BsrDI GCAATG 1 cut(s) 321
BsrGI TGTACA 1 cut(s) 159
BsrI ACTGG 1 cut(s) 601
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 1 cut(s) 448
BssT1I CCWWGG 1 cut(s) 522
Bst4CI ACNGT 3 cut(s) 471, 514, 539
Bst6I CTCTTC 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 159
BstDEI CTNAG 2 cut(s) 30, 180
BstF5I GGATG 1 cut(s) 463
BstKTI GATC 1 cut(s) 451
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNSI RCATGY 1 cut(s) 429
BstSFI CTRYAG 1 cut(s) 444
BstV1I GCAGC 1 cut(s) 430
BstV2I GAAGAC 1 cut(s) 644
BstX2I RGATCY 1 cut(s) 448
BstXI CCANNNNNNTGG 1 cut(s) 261
BstYI RGATCY 1 cut(s) 448
BsuRI GGCC 1 cut(s) 317
BtsCI GGATG 1 cut(s) 463
BtsIMutI CAGTG 2 cut(s) 254, 467
BveI ACCTGC 1 cut(s) 355
Csp6I GTAC 5 cut(s) 48, 160, 404, 594, 632
CspCI CAANNNNNGTGG 2 cut(s) 511, 546
CviAII CATG 4 cut(s) 13, 111, 196, 426
CviJI RGCY 8 cut(s) 29, 80, 135, 175, 210, 278, 317, 647
CviKI_1 RGCY 8 cut(s) 29, 80, 135, 175, 210, 278, 317, 647
CviQI GTAC 5 cut(s) 48, 160, 404, 594, 632
DdeI CTNAG 2 cut(s) 30, 180
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 522
Eco88I CYCGRG 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 522
FaeI CATG 4 cut(s) 16, 114, 199, 429
FaiI YATR 9 cut(s) 14, 112, 197, 427, 455, 476, 495, 574, 608
FatI CATG 4 cut(s) 12, 110, 195, 425
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 444
FspBI CTAG 5 cut(s) 51, 81, 171, 192, 410
GluI GCNGC 1 cut(s) 444
HaeIII GGCC 1 cut(s) 317
Hin1II CATG 4 cut(s) 16, 114, 199, 429
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 2 cut(s) 221, 227
HphI GGTGA 1 cut(s) 545
Hpy188I TCNGA 6 cut(s) 181, 226, 352, 481, 489, 616
Hpy188III TCNNGA 2 cut(s) 101, 563
HpyAV CCTTC 3 cut(s) 116, 372, 622
HpyCH4III ACNGT 3 cut(s) 471, 514, 539
HpyCH4V TGCA 3 cut(s) 152, 364, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 2 cut(s) 30, 180
Hsp92II CATG 4 cut(s) 16, 114, 199, 429
Kzo9I GATC 1 cut(s) 448
LpnPI CCDG 7 cut(s) 111, 149, 196, 203, 350, 537, 582
Lsp1109I GCAGC 1 cut(s) 430
MaeI CTAG 5 cut(s) 51, 81, 171, 192, 410
MaeIII GTNAC 2 cut(s) 228, 533
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MboII GAAGA 4 cut(s) 108, 256, 473, 649
MflI RGATCY 1 cut(s) 448
MluCI AATT 3 cut(s) 86, 346, 545
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 2 cut(s) 19, 594
MnlI CCTC 8 cut(s) 15, 74, 78, 245, 277, 417, 603, 610
MseI TTAA 2 cut(s) 96, 312
MslI CAYNNNNRTG 2 cut(s) 259, 424
Mva1269I GAATGC 2 cut(s) 154, 445
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeII GATC 1 cut(s) 448
NlaIII CATG 4 cut(s) 16, 114, 199, 429
NmuCI GTSAC 2 cut(s) 228, 533
NspI RCATGY 1 cut(s) 429
PaeR7I CTCGAG 1 cut(s) 236
PciI ACATGT 1 cut(s) 425
PctI GAATGC 2 cut(s) 154, 445
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 1 cut(s) 445
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PscI ACATGT 1 cut(s) 425
PspXI VCTCGAGB 1 cut(s) 236
PstI CTGCAG 1 cut(s) 448
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 5 cut(s) 49, 161, 405, 595, 633
RsaNI GTAC 5 cut(s) 48, 160, 404, 594, 632
RseI CAYNNNNRTG 2 cut(s) 259, 424
SaqAI TTAA 2 cut(s) 96, 312
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 1 cut(s) 448
SchI GAGTC 1 cut(s) 236
SfcI CTRYAG 1 cut(s) 444
Sfr274I CTCGAG 1 cut(s) 236
SlaI CTCGAG 1 cut(s) 236
SmiMI CAYNNNNRTG 2 cut(s) 259, 424
SmlI CTYRAG 2 cut(s) 205, 236
SmoI CTYRAG 2 cut(s) 205, 236
Sse9I AATT 3 cut(s) 86, 346, 545
SspMI CTAG 5 cut(s) 51, 81, 171, 192, 410
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 3 cut(s) 471, 514, 539
TaqI TCGA 2 cut(s) 73, 237
TasI AATT 3 cut(s) 86, 346, 545
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 2 cut(s) 96, 312
Tru9I TTAA 2 cut(s) 96, 312
TscAI CASTG 2 cut(s) 261, 474
TseFI GTSAC 2 cut(s) 228, 533
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 2 cut(s) 228, 533
TspDTI ATGAA 3 cut(s) 447, 452, 474
TspRI CASTG 2 cut(s) 261, 474
XapI RAATTY 1 cut(s) 346
XceI RCATGY 1 cut(s) 429
XhoI CTCGAG 1 cut(s) 236
XspI CTAG 5 cut(s) 51, 81, 171, 192, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.