Rroxscaffold_1G00042260

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000264
Physical Location & Seq
Forward (+)
60344364 .. 60345409
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042260.1

Sequence Viewer

Length: 375 bp
ATGCGAGGAAAGGAAGAGGAGGGCATGTCAGCAAAAATGAAGAATTTCCTGTCCTCAAGAAAAATATACAGAAAAACATGTGGTGATAGTGAGAAGTTATCGGGTCAAGTTCAAAATCTGGCATCTTCAATTGCAGAAAGTTCTGTTGATACTATTAAGTCAGAGAGATTGGAGACAGAGGATATGTTGAATGAAGTTTTGGTTGGAGGATGCAAGGTGAGAGAAACGACAATTGTTATGGGGAATAATGCAAGAAGTTCGGATAGTGACACGGCAAGCATAGTGTTGGAGAATCGGGTTCAGCTCTTTAAAATAGAGTCACCAGGCTTCAAAAAGTATAGTGGGCGTCTTAAGAGCCAATTCTTCTGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

124

Amino Acids

13.91

Weight (kDa)

8.56

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 43
AcyI GRCGYC 1 cut(s) 346
AflII CTTAAG 1 cut(s) 350
AflIII ACRYGT 1 cut(s) 77
AgsI TTSAA 4 cut(s) 113, 129, 190, 331
AjnI CCWGG 1 cut(s) 322
AjuI GAANNNNNNNTTGG 4 cut(s) 182, 186, 214, 218
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw26I GTCTC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 43
Asp700I GAANNNNTTC 1 cut(s) 44
AsuHPI GGTGA 3 cut(s) 95, 229, 312
BceAI ACGGC 1 cut(s) 288
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BciT130I CCWGG 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 167
BfrI CTTAAG 1 cut(s) 350
Bme1390I CCNGG 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 2 cut(s) 131, 200
BpuEI CTTGAG 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 346
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
BseBI CCWGG 1 cut(s) 324
BseGI GGATG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 167
BspTI CTTAAG 1 cut(s) 350
BssNI GRCGYC 1 cut(s) 346
Bst2UI CCWGG 1 cut(s) 324
Bst6I CTCTTC 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 346
BstAFI CTTAAG 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 277
BstF5I GGATG 1 cut(s) 215
BstMAI GTCTC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 324
BstNSI RCATGY 2 cut(s) 28, 81
BstSCI CCNGG 1 cut(s) 322
BtsCI GGATG 1 cut(s) 215
Cac8I GCNNGC 1 cut(s) 277
CseI GACGC 1 cut(s) 335
CviAII CATG 2 cut(s) 25, 78
CviJI RGCY 3 cut(s) 304, 327, 357
CviKI_1 RGCY 3 cut(s) 304, 327, 357
DraI TTTAAA 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 322
FaeI CATG 2 cut(s) 28, 81
FaiI YATR 7 cut(s) 26, 67, 79, 185, 239, 281, 339
FatI CATG 2 cut(s) 24, 77
FokI GGATG 1 cut(s) 222
HgaI GACGC 1 cut(s) 335
Hin1I GRCGYC 1 cut(s) 346
Hin1II CATG 2 cut(s) 28, 81
HinfI GANTC 2 cut(s) 292, 317
HphI GGTGA 3 cut(s) 95, 229, 312
Hpy188I TCNGA 2 cut(s) 163, 262
Hpy188III TCNNGA 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 134, 213, 251
Hsp92I GRCGYC 1 cut(s) 346
Hsp92II CATG 2 cut(s) 28, 81
LpnPI CCDG 5 cut(s) 62, 104, 309, 336, 352
LweI GCATC 2 cut(s) 131, 200
MaeIII GTNAC 2 cut(s) 266, 318
MboII GAAGA 4 cut(s) 26, 52, 117, 355
MfeI CAATTG 2 cut(s) 129, 231
MluCI AATT 4 cut(s) 43, 129, 231, 359
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 2 cut(s) 184, 267
MnlI CCTC 5 cut(s) 10, 13, 64, 172, 200
MroXI GAANNNNTTC 1 cut(s) 44
MseI TTAA 3 cut(s) 156, 309, 351
MspCI CTTAAG 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 324
MunI CAATTG 2 cut(s) 129, 231
MvaI CCWGG 1 cut(s) 324
NlaIII CATG 2 cut(s) 28, 81
NmuCI GTSAC 2 cut(s) 266, 318
NspI RCATGY 2 cut(s) 28, 81
PciI ACATGT 1 cut(s) 77
PdmI GAANNNNTTC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 292
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PscI ACATGT 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
SaqAI TTAA 3 cut(s) 156, 309, 351
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 324
SetI ASST 2 cut(s) 219, 306
SfaNI GCATC 2 cut(s) 131, 200
SmlI CTYRAG 2 cut(s) 55, 350
SmoI CTYRAG 2 cut(s) 55, 350
Sse9I AATT 4 cut(s) 43, 129, 231, 359
StyD4I CCNGG 1 cut(s) 322
TasI AATT 4 cut(s) 43, 129, 231, 359
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 3 cut(s) 156, 309, 351
Tru9I TTAA 3 cut(s) 156, 309, 351
TseFI GTSAC 2 cut(s) 266, 318
Tsp45I GTSAC 2 cut(s) 266, 318
TspDTI ATGAA 2 cut(s) 53, 207
Vha464I CTTAAG 1 cut(s) 350
XapI RAATTY 1 cut(s) 43
XceI RCATGY 2 cut(s) 28, 81
XmnI GAANNNNTTC 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.