Rh5CG298400

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000264
Physical Location & Seq
Forward (+)
32846370 .. 32846702
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG298400.1

Sequence Viewer

Length: 333 bp
ATGAGTTTGTTGAAATGCGCAATTGTGGATACAAGTAAGTTAAGGACAGGTTGTGATGCTATAAAACTCAGCATCAAGTCACCATTTCAGTTTTTTCAACTTTGGGCGTGGGAAAGATTTGTAGAGCTGAGTCCAAATCCCAGAATGATCAACTTTGTGCAGCCAAGATTGGCTCGATGGGACAAAGTAAGTGGCGTGGAAGTTGAAAACTTGAGGAAGGTTTTAGACTCTGCCAGACATGGTTTCAAGTGGCGTCCTTATGCCTTGACCATTGAAAACTGGCAGCTGCCTAAGTACTATCCTGTAGAGGAAATGCATGTATCAGATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

110

Amino Acids

13.0

Weight (kDa)

9.12

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 21 - 96 4.6e-17 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 19
AcyI GRCGYC 1 cut(s) 253
AfaI GTAC 1 cut(s) 296
AgsI TTSAA 5 cut(s) 13, 98, 206, 247, 275
AluBI AGCT 2 cut(s) 127, 286
AluI AGCT 2 cut(s) 127, 286
ApeKI GCWGC 3 cut(s) 160, 283, 286
AspLEI GCGC 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 72
BbvI GCAGC 3 cut(s) 172, 273, 295
BccI CCATC 1 cut(s) 171
BciVI GTATCC 1 cut(s) 22
BclI TGATCA 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 303
BfuI GTATCC 1 cut(s) 22
BisI GCNGC 3 cut(s) 161, 284, 287
BlsI GCNGC 3 cut(s) 162, 285, 288
BmcAI AGTACT 1 cut(s) 296
BmsI GCATC 2 cut(s) 46, 81
BpuEI CTTGAG 1 cut(s) 232
BsaHI GRCGYC 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 284
BseMII CTCAG 2 cut(s) 82, 119
BseNI ACTGG 1 cut(s) 284
BseXI GCAGC 3 cut(s) 172, 273, 295
BsgI GTGCAG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 147
BspCNI CTCAG 2 cut(s) 81, 120
BsrI ACTGG 1 cut(s) 284
BssMI GATC 1 cut(s) 147
BssNI GRCGYC 1 cut(s) 253
BstACI GRCGYC 1 cut(s) 253
BstDEI CTNAG 3 cut(s) 68, 128, 291
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 320
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 3 cut(s) 172, 273, 295
BsuI GTATCC 1 cut(s) 22
CfoI GCGC 1 cut(s) 20
CseI GACGC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 295
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 2 cut(s) 239, 317
CviJI RGCY 4 cut(s) 127, 163, 173, 286
CviKI_1 RGCY 4 cut(s) 127, 163, 173, 286
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 3 cut(s) 68, 128, 291
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 318
FaeI CATG 2 cut(s) 242, 320
FaiI YATR 4 cut(s) 62, 240, 261, 318
FaqI GGGAC 1 cut(s) 194
FatI CATG 2 cut(s) 238, 316
FbaI TGATCA 1 cut(s) 147
Fnu4HI GCNGC 3 cut(s) 161, 284, 287
Fsp4HI GCNGC 3 cut(s) 161, 284, 287
FspI TGCGCA 1 cut(s) 19
GlaI GCGC 1 cut(s) 19
GluI GCNGC 3 cut(s) 161, 284, 287
HgaI GACGC 1 cut(s) 242
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 253
Hin1II CATG 2 cut(s) 242, 320
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 2 cut(s) 130, 227
HphI GGTGA 1 cut(s) 72
Hpy188I TCNGA 1 cut(s) 325
HpyAV CCTTC 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 160, 316
HpyF3I CTNAG 3 cut(s) 68, 128, 291
Hsp92I GRCGYC 1 cut(s) 253
Hsp92II CATG 2 cut(s) 242, 320
HspAI GCGC 1 cut(s) 18
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 1 cut(s) 147
LpnPI CCDG 5 cut(s) 33, 154, 247, 265, 315
Lsp1109I GCAGC 3 cut(s) 172, 273, 295
LweI GCATC 2 cut(s) 46, 81
MaeIII GTNAC 1 cut(s) 78
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MfeI CAATTG 1 cut(s) 21
MluCI AATT 1 cut(s) 21
MlyI GAGTC 2 cut(s) 139, 221
MnlI CCTC 2 cut(s) 207, 301
Mph1103I ATGCAT 1 cut(s) 318
MseI TTAA 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 286
MunI CAATTG 1 cut(s) 21
NdeII GATC 1 cut(s) 147
NlaIII CATG 2 cut(s) 242, 320
NmuCI GTSAC 1 cut(s) 78
NsbI TGCGCA 1 cut(s) 19
NsiI ATGCAT 1 cut(s) 318
NspI RCATGY 1 cut(s) 320
PkrI GCNGC 3 cut(s) 162, 285, 288
PleI GAGTC 2 cut(s) 138, 221
PpsI GAGTC 2 cut(s) 138, 221
PvuII CAGCTG 1 cut(s) 286
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 3 cut(s) 161, 284, 287
Sau3AI GATC 1 cut(s) 147
ScaI AGTACT 1 cut(s) 296
SchI GAGTC 2 cut(s) 139, 221
SetI ASST 4 cut(s) 52, 129, 222, 288
SfaNI GCATC 2 cut(s) 46, 81
SfcI CTRYAG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 1 cut(s) 21
TaqI TCGA 1 cut(s) 175
TasI AATT 1 cut(s) 21
TatI WGTACW 1 cut(s) 294
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseFI GTSAC 1 cut(s) 78
TseI GCWGC 3 cut(s) 160, 283, 286
Tsp45I GTSAC 1 cut(s) 78
XceI RCATGY 1 cut(s) 320
ZrmI AGTACT 1 cut(s) 296
Zsp2I ATGCAT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.