Rorug05G0173600

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000264
Physical Location & Seq
Reverse (-)
16174126 .. 16176784
2659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0173600.1

Sequence Viewer

Length: 738 bp
ATGGTGAGAGTCAGCGTTTTGAACGATACTCTGAGGAGCATGTACAACGCAGAGAAGAGGGGCAAGAGACAGGTCATGATCAGGCCTTCGTCCAAGGTCATCATCAAGTTCCTTATCGTTATGCAGAAGCACGGTTATATTGGAGAGTTTGAGTATGTTGATGACCACAGATCTGGAAAGATTGTGGTTGAACTCAATGGGAGGCTGAACAAGTGTGGGGTTATCAGTCCTCGCTTTGATGTTGGTGTCAAGGAGATTGAAGGCCGGACGGCTAGACTTCTTCCGTCAAGACAGTTTGGATACATTGTGTTGACAACATCTGCTGGAATCATGGATCATGAGGAAGCTAGGAGAAAGAATGTTGGTGGCAAGTCACTTTGTTCTTGGGACCCTTCCAAGAGGCCAACAGCTGCAGAGGCCCTCCAGCACCCTTTCTTCCAGAGTTGCTATTATGTTCCACCATCCCTTCGTCCCAAACTAACGACTGCTAGGACACCACCATTTGCTGGAACAAGGGGAGCGTTGGAGCAGCAATCTGCTAGAAAGGTCTCTGGGACTTTATCCAGTGCAAAGCTCACTAGCAGTTTTCCTTCTCCAAAGTTGCATGCTTCTATAGGCACAGGTGTGCAGCGCAAATTGGATATGGCTAACCAGGATGCTAAAAAGAATGATAAATACTTGAAGAGCTCTGCCAATCAACAAAAATATCGGCCCCCTGGAAAGAGCAGTCCTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

245

Amino Acids

27.27

Weight (kDa)

10.23

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 128 2.9e-20 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 506
AclWI GGATC 1 cut(s) 342
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 506
AgsI TTSAA 4 cut(s) 22, 191, 260, 682
AjnI CCWGG 2 cut(s) 651, 715
AleI CACNNNNGTG 1 cut(s) 623
AluBI AGCT 4 cut(s) 347, 410, 574, 687
AluI AGCT 4 cut(s) 347, 410, 574, 687
Alw21I GWGCWC 1 cut(s) 689
Alw26I GTCTC 2 cut(s) 61, 553
AlwI GGATC 1 cut(s) 342
AoxI GGCC 5 cut(s) 83, 262, 401, 417, 710
ApeKI GCWGC 3 cut(s) 410, 529, 628
AspLEI GCGC 1 cut(s) 633
AspS9I GGNCC 3 cut(s) 388, 418, 711
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 388
BanII GRGCYC 1 cut(s) 689
Bbv12I GWGCWC 1 cut(s) 689
BbvI GCAGC 3 cut(s) 397, 541, 640
BccI CCATC 1 cut(s) 469
BceAI ACGGC 1 cut(s) 285
BciT130I CCWGG 2 cut(s) 653, 717
BciVI GTATCC 1 cut(s) 293
BclI TGATCA 1 cut(s) 78
BcoDI GTCTC 2 cut(s) 61, 553
BfaI CTAG 5 cut(s) 273, 348, 489, 540, 579
BfmI CTRYAG 2 cut(s) 411, 612
BfuI GTATCC 1 cut(s) 293
BglII AGATCT 1 cut(s) 170
BisI GCNGC 3 cut(s) 411, 530, 629
BlsI GCNGC 3 cut(s) 412, 531, 630
Bme1390I CCNGG 2 cut(s) 653, 717
Bme18I GGWCC 1 cut(s) 388
BmgT120I GGNCC 3 cut(s) 388, 418, 711
BmiI GGNNCC 3 cut(s) 389, 390, 713
BmrFI CCNGG 2 cut(s) 653, 717
BmsI GCATC 1 cut(s) 646
BpmI CTGGAG 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 553
BsaJI CCNNGG 2 cut(s) 93, 715
Bsc4I CCNNNNNNNGG 1 cut(s) 506
Bse1I ACTGG 1 cut(s) 564
BseBI CCWGG 2 cut(s) 653, 717
BseDI CCNNGG 2 cut(s) 93, 715
BseGI GGATG 2 cut(s) 461, 661
BseLI CCNNNNNNNGG 1 cut(s) 506
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 564
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 3 cut(s) 397, 541, 640
BsgI GTGCAG 1 cut(s) 647
BshFI GGCC 5 cut(s) 85, 264, 403, 419, 712
BsiHKAI GWGCWC 1 cut(s) 689
BsiSI CCGG 1 cut(s) 265
BslFI GGGAC 3 cut(s) 401, 456, 568
BslI CCNNNNNNNGG 1 cut(s) 506
BsmAI GTCTC 2 cut(s) 61, 553
BsmFI GGGAC 3 cut(s) 401, 456, 568
BsnI GGCC 5 cut(s) 85, 264, 403, 419, 712
Bso31I GGTCTC 1 cut(s) 553
Bsp1286I GDGCHC 1 cut(s) 689
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 3 cut(s) 78, 170, 334
BspANI GGCC 5 cut(s) 85, 264, 403, 419, 712
BspCNI CTCAG 1 cut(s) 24
BspHI TCATGA 2 cut(s) 75, 337
BspLI GGNNCC 3 cut(s) 389, 390, 713
BspMAI CTGCAG 1 cut(s) 415
BspPI GGATC 1 cut(s) 342
BspQI GCTCTTC 1 cut(s) 677
BspTNI GGTCTC 1 cut(s) 553
BsrGI TGTACA 1 cut(s) 42
BsrI ACTGG 1 cut(s) 564
BssECI CCNNGG 2 cut(s) 93, 715
BssMI GATC 3 cut(s) 78, 170, 334
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 2 cut(s) 653, 717
Bst4CI ACNGT 2 cut(s) 134, 294
Bst6I CTCTTC 2 cut(s) 50, 677
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 606
BstDEI CTNAG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 461, 661
BstHHI GCGC 1 cut(s) 633
BstKTI GATC 3 cut(s) 81, 173, 337
BstMAI GTCTC 2 cut(s) 61, 553
BstMBI GATC 3 cut(s) 78, 170, 334
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNI CCWGG 2 cut(s) 653, 717
BstNSI RCATGY 2 cut(s) 43, 608
BstSCI CCNGG 2 cut(s) 651, 715
BstSFI CTRYAG 2 cut(s) 411, 612
BstV1I GCAGC 3 cut(s) 397, 541, 640
BstX2I RGATCY 1 cut(s) 170
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 1 cut(s) 170
BsuI GTATCC 1 cut(s) 293
BsuRI GGCC 5 cut(s) 85, 264, 403, 419, 712
BtsCI GGATG 2 cut(s) 461, 661
BtsIMutI CAGTG 1 cut(s) 571
Cac8I GCNNGC 1 cut(s) 606
CciI TCATGA 2 cut(s) 75, 337
CfoI GCGC 1 cut(s) 633
Cfr13I GGNCC 3 cut(s) 388, 418, 711
Csp6I GTAC 1 cut(s) 43
CviAII CATG 5 cut(s) 40, 76, 331, 338, 605
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 32
DpnI GATC 3 cut(s) 80, 172, 336
DpnII GATC 3 cut(s) 78, 170, 334
Eam1104I CTCTTC 2 cut(s) 50, 677
EarI CTCTTC 2 cut(s) 50, 677
Ecl136II GAGCTC 1 cut(s) 687
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 689
Eco31I GGTCTC 1 cut(s) 553
Eco47I GGWCC 1 cut(s) 388
Eco53kI GAGCTC 1 cut(s) 687
EcoICRI GAGCTC 1 cut(s) 687
EcoO109I RGGNCCY 2 cut(s) 388, 418
EcoRII CCWGG 2 cut(s) 651, 715
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 689
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 5 cut(s) 43, 79, 334, 341, 608
FaqI GGGAC 3 cut(s) 401, 456, 568
FatI CATG 5 cut(s) 39, 75, 330, 337, 604
FbaI TGATCA 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 411, 530, 629
FokI GGATG 2 cut(s) 448, 668
FriOI GRGCYC 1 cut(s) 689
Fsp4HI GCNGC 3 cut(s) 411, 530, 629
FspBI CTAG 5 cut(s) 273, 348, 489, 540, 579
GlaI GCGC 1 cut(s) 632
GluI GCNGC 3 cut(s) 411, 530, 629
GsuI CTGGAG 1 cut(s) 407
HaeIII GGCC 5 cut(s) 85, 264, 403, 419, 712
HapII CCGG 1 cut(s) 265
HhaI GCGC 1 cut(s) 633
Hin1II CATG 5 cut(s) 43, 79, 334, 341, 608
Hin6I GCGC 1 cut(s) 631
HinP1I GCGC 1 cut(s) 631
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 2 cut(s) 9, 327
HpaII CCGG 1 cut(s) 265
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 5 cut(s) 76, 174, 288, 338, 439
Hpy8I GTNNAC 1 cut(s) 312
HpyAV CCTTC 5 cut(s) 96, 254, 402, 476, 600
HpyCH4III ACNGT 2 cut(s) 134, 294
HpyCH4V TGCA 5 cut(s) 124, 413, 569, 604, 628
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 1 cut(s) 32
Hsp92II CATG 5 cut(s) 43, 79, 334, 341, 608
HspAI GCGC 1 cut(s) 631
KflI GGGWCCC 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 3 cut(s) 78, 170, 334
LguI GCTCTTC 1 cut(s) 677
LmnI GCTCC 3 cut(s) 36, 518, 526
Lsp1109I GCAGC 3 cut(s) 397, 541, 640
LweI GCATC 1 cut(s) 646
MaeI CTAG 5 cut(s) 273, 348, 489, 540, 579
MaeIII GTNAC 1 cut(s) 372
MalI GATC 3 cut(s) 80, 172, 336
MboI GATC 3 cut(s) 78, 170, 334
MboII GAAGA 4 cut(s) 67, 272, 427, 694
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 689
MluCI AATT 1 cut(s) 635
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 8 cut(s) 27, 51, 195, 240, 334, 393, 409, 431
MslI CAYNNNNRTG 1 cut(s) 623
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 1 cut(s) 265
MspR9I CCNGG 2 cut(s) 653, 717
MvaI CCWGG 2 cut(s) 653, 717
MwoI GCNNNNNNNGC 1 cut(s) 416
NdeII GATC 3 cut(s) 78, 170, 334
NlaIII CATG 5 cut(s) 43, 79, 334, 341, 608
NlaIV GGNNCC 3 cut(s) 389, 390, 713
NmuCI GTSAC 1 cut(s) 372
NspI RCATGY 2 cut(s) 43, 608
OliI CACNNNNGTG 1 cut(s) 623
PaeI GCATGC 1 cut(s) 608
PagI TCATGA 2 cut(s) 75, 337
PceI AGGCCT 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 677
PfeI GAWTC 1 cut(s) 327
PflMI CCANNNNNTGG 1 cut(s) 506
PkrI GCNGC 3 cut(s) 412, 531, 630
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PpuMI RGGWCCY 1 cut(s) 388
Psp124BI GAGCTC 1 cut(s) 689
Psp5II RGGWCCY 1 cut(s) 388
Psp6I CCWGG 2 cut(s) 651, 715
PspGI CCWGG 2 cut(s) 651, 715
PspN4I GGNNCC 3 cut(s) 389, 390, 713
PspPI GGNCC 3 cut(s) 388, 418, 711
PspPPI RGGWCCY 1 cut(s) 388
PstI CTGCAG 1 cut(s) 415
PsuI RGATCY 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 623
SacI GAGCTC 1 cut(s) 689
SapI GCTCTTC 1 cut(s) 677
SatI GCNGC 3 cut(s) 411, 530, 629
Sau3AI GATC 3 cut(s) 78, 170, 334
Sau96I GGNCC 3 cut(s) 388, 418, 711
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 2 cut(s) 653, 717
SduI GDGCHC 1 cut(s) 689
SetI ASST 8 cut(s) 75, 99, 349, 412, 549, 576, 625, 689
SfaNI GCATC 1 cut(s) 646
SfcI CTRYAG 2 cut(s) 411, 612
SinI GGWCC 1 cut(s) 388
SmiMI CAYNNNNRTG 1 cut(s) 623
SphI GCATGC 1 cut(s) 608
Sse9I AATT 1 cut(s) 635
SseBI AGGCCT 1 cut(s) 85
SspMI CTAG 5 cut(s) 273, 348, 489, 540, 579
SstI GAGCTC 1 cut(s) 689
StuI AGGCCT 1 cut(s) 85
StyD4I CCNGG 2 cut(s) 651, 715
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 2 cut(s) 134, 294
TasI AATT 1 cut(s) 635
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 1 cut(s) 327
TscAI CASTG 1 cut(s) 571
TseFI GTSAC 1 cut(s) 372
TseI GCWGC 3 cut(s) 410, 529, 628
Tsp45I GTSAC 1 cut(s) 372
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 1 cut(s) 571
Van91I CCANNNNNTGG 1 cut(s) 506
VpaK11BI GGWCC 1 cut(s) 388
XceI RCATGY 2 cut(s) 43, 608
XspI CTAG 5 cut(s) 273, 348, 489, 540, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.