Rw5G024340

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000264
Physical Location & Seq
Forward (+)
34587239 .. 34589492
2254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G024340.1

Sequence Viewer

Length: 639 bp
ATGATTGAAGAGAAAGAAATGGTCATGGTTTCACCAACTGGTGGAGACCCATTCCGCAAAAATGCCTATTTTCTCAAACCCATTCTCCCTGATTCCTCCAATTATGAACCTCCTTTCAATCTCCCTCACTGTCTTTCCTCCCTCGCACCCCGTTTTGACCCAAAAAAGCTAGAGCTTCAAGTCCTTGGATGGCGTTTCGACCACCAAGATTTGCAGAGTTGGTTTCTCCACTTGGCTTCTAAGCACCAATCTACATGGAAGAAAGCTGGTGTCTTTGAAGCCATCTTCAATTCCACGTACCAAATCAAAAAGAAAAAGGATTTGGTTTGTGGGTTTGCAGAGAAATGGTGTTGTGAGACCAACACCTTCATCTTTCCATGGGGTGAAGCAACTATCACATTGGAGGATGTTATGGTTTTGGGAGGCTTTTCTGTTTTGGGAGACTCCATTTTAAGTCCTATTGAAAGCAGAGAACTGAAAGAAATAGAAGACAAACTTGAGGAAGAGAGATTTGGACTTTACAATCGCGAGGGTGGGATTAGAGTTGCTTACATACACCTATGGATGAAGAAGTTCATGAAGAGTGGGAGCGAATTAGAGCACGAAGCATTCCTTGTGTTCTGGCTGTCCAGGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

212

Amino Acids

24.64

Weight (kDa)

5.91

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 90 - 211 1.1e-40 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 41
AccII CGCG 1 cut(s) 528
AciI CCGC 1 cut(s) 55
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 6 cut(s) 8, 118, 179, 278, 289, 464
AjnI CCWGG 1 cut(s) 629
AjuI GAANNNNNNNTTGG 4 cut(s) 305, 337, 495, 527
AluBI AGCT 3 cut(s) 169, 175, 266
AluI AGCT 3 cut(s) 169, 175, 266
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 3 cut(s) 39, 350, 435
Asp700I GAANNNNTTC 1 cut(s) 572
AsuHPI GGTGA 2 cut(s) 24, 395
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 603
BccI CCATC 2 cut(s) 183, 290
BciT130I CCWGG 1 cut(s) 631
BcoDI GTCTC 3 cut(s) 39, 350, 435
BfaI CTAG 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 631
BmrFI CCNGG 1 cut(s) 631
BpiI GAAGAC 1 cut(s) 495
BpuEI CTTGAG 1 cut(s) 518
BsaAI YACGTR 1 cut(s) 297
BsaI GGTCTC 2 cut(s) 39, 350
BsaJI CCNNGG 2 cut(s) 184, 377
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 631
BseDI CCNNGG 2 cut(s) 184, 377
BseGI GGATG 3 cut(s) 194, 412, 570
BseLI CCNNNNNNNGG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 528
BsiHKAI GWGCWC 1 cut(s) 603
BslI CCNNNNNNNGG 1 cut(s) 41
BsmAI GTCTC 3 cut(s) 39, 350, 435
BsmI GAATGC 1 cut(s) 608
Bso31I GGTCTC 2 cut(s) 39, 350
Bsp1286I GDGCHC 1 cut(s) 603
Bsp19I CCATGG 1 cut(s) 377
Bsp68I TCGCGA 1 cut(s) 528
BspACI CCGC 1 cut(s) 55
BspFNI CGCG 1 cut(s) 528
BspHI TCATGA 1 cut(s) 576
BspTNI GGTCTC 2 cut(s) 39, 350
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 184, 377
BssT1I CCWWGG 2 cut(s) 184, 377
Bst2UI CCWGG 1 cut(s) 631
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 3 cut(s) 3, 498, 575
BstBAI YACGTR 1 cut(s) 297
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 377
BstF5I GGATG 3 cut(s) 194, 412, 570
BstFNI CGCG 1 cut(s) 528
BstMAI GTCTC 3 cut(s) 39, 350, 435
BstNI CCWGG 1 cut(s) 631
BstSCI CCNGG 1 cut(s) 629
BstUI CGCG 1 cut(s) 528
BstV2I GAAGAC 1 cut(s) 495
BtgI CCRYGG 1 cut(s) 377
BtsCI GGATG 3 cut(s) 194, 412, 570
BtsIMutI CAGTG 1 cut(s) 127
BtuMI TCGCGA 1 cut(s) 528
CciI TCATGA 1 cut(s) 576
Csp6I GTAC 1 cut(s) 298
CviAII CATG 4 cut(s) 25, 255, 378, 577
CviJI RGCY 7 cut(s) 169, 175, 236, 266, 281, 426, 625
CviKI_1 RGCY 7 cut(s) 169, 175, 236, 266, 281, 426, 625
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 1 cut(s) 240
Eam1104I CTCTTC 3 cut(s) 3, 498, 575
EarI CTCTTC 3 cut(s) 3, 498, 575
Eco130I CCWWGG 2 cut(s) 184, 377
Eco31I GGTCTC 2 cut(s) 39, 350
EcoRII CCWGG 1 cut(s) 629
EcoT14I CCWWGG 2 cut(s) 184, 377
ErhI CCWWGG 2 cut(s) 184, 377
FaeI CATG 4 cut(s) 28, 258, 381, 580
FaiI YATR 8 cut(s) 26, 105, 256, 379, 413, 554, 562, 578
FalI AAGNNNNNCTT 4 cut(s) 480, 512, 597, 629
FatI CATG 4 cut(s) 24, 254, 377, 576
FokI GGATG 3 cut(s) 201, 419, 577
FspBI CTAG 1 cut(s) 170
Hin1II CATG 4 cut(s) 28, 258, 381, 580
HinfI GANTC 2 cut(s) 92, 443
HphI GGTGA 2 cut(s) 24, 395
Hpy188III TCNNGA 2 cut(s) 527, 577
HpyAV CCTTC 1 cut(s) 376
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 2 cut(s) 214, 338
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 296
Hsp92II CATG 4 cut(s) 28, 258, 381, 580
LmnI GCTCC 1 cut(s) 588
LpnPI CCDG 5 cut(s) 24, 102, 252, 607, 616
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 296
MboII GAAGA 7 cut(s) 20, 271, 277, 500, 515, 580, 592
MhlI GDGCHC 1 cut(s) 603
MluCI AATT 3 cut(s) 100, 289, 593
MlyI GAGTC 1 cut(s) 437
MnlI CCTC 9 cut(s) 106, 120, 135, 148, 152, 397, 416, 493, 523
MroXI GAANNNNTTC 1 cut(s) 572
MseI TTAA 1 cut(s) 452
MspR9I CCNGG 1 cut(s) 631
Mva1269I GAATGC 1 cut(s) 608
MvaI CCWGG 1 cut(s) 631
MvnI CGCG 1 cut(s) 528
NcoI CCATGG 1 cut(s) 377
NlaIII CATG 4 cut(s) 28, 258, 381, 580
NruI TCGCGA 1 cut(s) 528
PagI TCATGA 1 cut(s) 576
PctI GAATGC 1 cut(s) 608
PdmI GAANNNNTTC 1 cut(s) 572
PfeI GAWTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 41
PleI GAGTC 1 cut(s) 437
PpsI GAGTC 1 cut(s) 437
Ppu21I YACGTR 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 629
PspGI CCWGG 1 cut(s) 629
RruI TCGCGA 1 cut(s) 528
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SaqAI TTAA 1 cut(s) 452
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 1 cut(s) 631
SduI GDGCHC 1 cut(s) 603
SetI ASST 8 cut(s) 112, 171, 177, 268, 299, 368, 561, 635
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
Sse9I AATT 3 cut(s) 100, 289, 593
SsiI CCGC 1 cut(s) 55
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 629
StyI CCWWGG 2 cut(s) 184, 377
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 1 cut(s) 299
TaqI TCGA 1 cut(s) 198
TasI AATT 3 cut(s) 100, 289, 593
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 452
Tru9I TTAA 1 cut(s) 452
TscAI CASTG 1 cut(s) 134
TspDTI ATGAA 5 cut(s) 120, 358, 565, 581, 593
TspRI CASTG 1 cut(s) 134
Van91I CCANNNNNTGG 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 572
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.