Rroxscaffold_1G00042330

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000264
Physical Location & Seq
Forward (+)
60402184 .. 60402822
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042330.1

Sequence Viewer

Length: 639 bp
ATGGCGATGGGAGGCTATTCCGTTCTTGGAGAGTCGATTTTGAGCCCTCTTGAAAACAGAGAGCTCAAGGAAATAGAAGAGAAACTTAATCAAGAGCGAACAGAGATAAATAGGGGTGCGTCGCGTAGACCTTCTACTAGCTTATGGTTGAAGAAATTCATGAACAGTGGGACTTTATTGGAGCACGAAGCATTCCTTGCATTTTGGTTATCAAGGTATGTATTTCCGGATGCTCGTAGTACAACACAAAAGCACGTTTTCCCAATTGCAATTCATTTAGCTAGGGGAACCCGAATTGCACTTGCACCTGCTGTTCTTGCTAGCATTTATAAGGACTTGAGTTTGTTGAAATGTGCAATTGTGGATACAAGTAAGTTAAGGACAGGTTGTGATGCTATAAAACTCAGCATCAAGTCACCATTTCAGTTTGTTCAACTTTGGGCGTGGGAAAGATTTGTAGAGCTGAGTCCAAATCCCAGAATGATCAATTTTCCGCAGCCAAGATTGGCTCGATGGGACAAAGTAAGTGGCGTGGAAGTTCAAAACTTGAGGAACGTTTTAGACTCTGCCGGAGATGGTTTCAAGTGGCGTCCTTATGCCTTGACCATTGAAAGGCGTTGCCTAAGTACTATCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

212

Amino Acids

24.19

Weight (kDa)

9.71

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 1 - 203 3.4e-54 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 330
AarI CACCTGC 1 cut(s) 316
Acc36I ACCTGC 1 cut(s) 316
AccI GTMKAC 1 cut(s) 127
AccII CGCG 1 cut(s) 124
AccIII TCCGGA 1 cut(s) 226
AciI CCGC 1 cut(s) 494
AclI AACGTT 1 cut(s) 555
AcsI RAATTY 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 589
AfaI GTAC 2 cut(s) 241, 628
AfiI CCNNNNNNNGG 1 cut(s) 612
AgsI TTSAA 7 cut(s) 53, 151, 349, 434, 542, 583, 611
AluBI AGCT 4 cut(s) 64, 141, 281, 463
AluI AGCT 4 cut(s) 64, 141, 281, 463
Alw21I GWGCWC 2 cut(s) 66, 186
Aor13HI TCCGGA 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 496
ApoI RAATTY 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 408
AsuNHI GCTAGC 1 cut(s) 320
BanII GRGCYC 2 cut(s) 47, 66
Bbv12I GWGCWC 2 cut(s) 66, 186
BbvI GCAGC 1 cut(s) 508
BccI CCATC 2 cut(s) 507, 569
BciVI GTATCC 1 cut(s) 358
BclI TGATCA 1 cut(s) 483
BfaI CTAG 3 cut(s) 138, 282, 321
BfmI CTRYAG 1 cut(s) 635
BfuAI ACCTGC 1 cut(s) 316
BfuI GTATCC 1 cut(s) 358
BisI GCNGC 1 cut(s) 497
BlsI GCNGC 1 cut(s) 498
BmcAI AGTACT 1 cut(s) 628
BmiI GGNNCC 1 cut(s) 289
BmsI GCATC 3 cut(s) 220, 382, 417
BmtI GCTAGC 1 cut(s) 324
BpuEI CTTGAG 3 cut(s) 50, 358, 568
BsaHI GRCGYC 1 cut(s) 589
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 612
BseAI TCCGGA 1 cut(s) 226
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 612
BseMII CTCAG 2 cut(s) 418, 455
BseXI GCAGC 1 cut(s) 508
Bsh1236I CGCG 1 cut(s) 124
BsiHKAI GWGCWC 2 cut(s) 66, 186
BsiSI CCGG 2 cut(s) 227, 570
BslFI GGGAC 2 cut(s) 184, 530
BslI CCNNNNNNNGG 1 cut(s) 612
BsmFI GGGAC 2 cut(s) 184, 530
BsmI GAATGC 1 cut(s) 191
Bsp1286I GDGCHC 3 cut(s) 47, 66, 186
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 1 cut(s) 483
BspACI CCGC 1 cut(s) 494
BspCNI CTCAG 2 cut(s) 417, 456
BspEI TCCGGA 1 cut(s) 226
BspFNI CGCG 1 cut(s) 124
BspHI TCATGA 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 289
BspMI ACCTGC 1 cut(s) 316
BspOI GCTAGC 1 cut(s) 324
BssMI GATC 1 cut(s) 483
BssNI GRCGYC 1 cut(s) 589
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 589
BstAPI GCANNNNNTGC 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 3 cut(s) 404, 464, 623
BstF5I GGATG 1 cut(s) 235
BstFNI CGCG 1 cut(s) 124
BstKTI GATC 1 cut(s) 486
BstMBI GATC 1 cut(s) 483
BstMWI GCNNNNNNNGC 2 cut(s) 197, 317
BstSFI CTRYAG 1 cut(s) 635
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 508
BsuI GTATCC 1 cut(s) 358
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 172
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 322
CciI TCATGA 1 cut(s) 159
CseI GACGC 2 cut(s) 108, 578
Csp6I GTAC 2 cut(s) 240, 627
CspCI CAANNNNNGTGG 2 cut(s) 508, 543
CviAII CATG 1 cut(s) 160
CviJI RGCY 8 cut(s) 15, 45, 64, 141, 281, 463, 499, 509
CviKI_1 RGCY 8 cut(s) 15, 45, 64, 141, 281, 463, 499, 509
CviQI GTAC 2 cut(s) 240, 627
DdeI CTNAG 3 cut(s) 404, 464, 623
DpnI GATC 1 cut(s) 485
DpnII GATC 1 cut(s) 483
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 2 cut(s) 47, 66
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoT38I GRGCYC 2 cut(s) 47, 66
FaeI CATG 1 cut(s) 163
FaiI YATR 6 cut(s) 145, 161, 219, 330, 398, 597
FalI AAGNNNNNCTT 4 cut(s) 69, 101, 180, 212
FaqI GGGAC 2 cut(s) 184, 530
FatI CATG 1 cut(s) 159
FbaI TGATCA 1 cut(s) 483
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 497
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 2 cut(s) 47, 66
Fsp4HI GCNGC 1 cut(s) 497
FspBI CTAG 3 cut(s) 138, 282, 321
GluI GCNGC 1 cut(s) 497
HapII CCGG 2 cut(s) 227, 570
HgaI GACGC 2 cut(s) 108, 578
Hin1I GRCGYC 1 cut(s) 589
Hin1II CATG 1 cut(s) 163
HinfI GANTC 3 cut(s) 32, 466, 563
HpaII CCGG 2 cut(s) 227, 570
HphI GGTGA 1 cut(s) 408
Hpy166II GTNNAC 1 cut(s) 128
Hpy188III TCNNGA 4 cut(s) 50, 92, 160, 227
Hpy8I GTNNAC 1 cut(s) 128
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 141
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 2 cut(s) 255, 555
HpyCH4V TGCA 5 cut(s) 200, 269, 299, 305, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 317
HpyF3I CTNAG 3 cut(s) 404, 464, 623
HpySE526I ACGT 2 cut(s) 255, 555
Hsp92I GRCGYC 1 cut(s) 589
Hsp92II CATG 1 cut(s) 163
Kpn2I TCCGGA 1 cut(s) 226
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 1 cut(s) 483
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 5 cut(s) 240, 321, 369, 490, 583
Lsp1109I GCAGC 1 cut(s) 508
LweI GCATC 3 cut(s) 220, 382, 417
MaeI CTAG 3 cut(s) 138, 282, 321
MaeII ACGT 2 cut(s) 255, 555
MaeIII GTNAC 1 cut(s) 414
MalI GATC 1 cut(s) 485
MboI GATC 1 cut(s) 483
MboII GAAGA 2 cut(s) 89, 163
MfeI CAATTG 2 cut(s) 264, 357
MhlI GDGCHC 3 cut(s) 47, 66, 186
MluCI AATT 6 cut(s) 155, 264, 270, 294, 357, 487
MlyI GAGTC 3 cut(s) 41, 475, 557
MnlI CCTC 3 cut(s) 5, 57, 543
MroI TCCGGA 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 155
MseI TTAA 2 cut(s) 87, 377
MspI CCGG 2 cut(s) 227, 570
MunI CAATTG 2 cut(s) 264, 357
Mva1269I GAATGC 1 cut(s) 191
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 2 cut(s) 197, 317
NdeII GATC 1 cut(s) 483
NheI GCTAGC 1 cut(s) 320
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 414
PagI TCATGA 1 cut(s) 159
PaqCI CACCTGC 1 cut(s) 316
PctI GAATGC 1 cut(s) 191
PdmI GAANNNNTTC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 498
PleI GAGTC 3 cut(s) 40, 474, 557
PpsI GAGTC 3 cut(s) 40, 474, 557
PsiI TTATAA 1 cut(s) 330
Psp124BI GAGCTC 1 cut(s) 66
Psp1406I AACGTT 1 cut(s) 555
PspN4I GGNNCC 1 cut(s) 289
RsaI GTAC 2 cut(s) 241, 628
RsaNI GTAC 2 cut(s) 240, 627
SacI GAGCTC 1 cut(s) 66
SaqAI TTAA 2 cut(s) 87, 377
SatI GCNGC 1 cut(s) 497
Sau3AI GATC 1 cut(s) 483
ScaI AGTACT 1 cut(s) 628
SchI GAGTC 3 cut(s) 41, 475, 557
SduI GDGCHC 3 cut(s) 47, 66, 186
SfaNI GCATC 3 cut(s) 220, 382, 417
SfcI CTRYAG 1 cut(s) 635
SmlI CTYRAG 3 cut(s) 65, 337, 547
SmoI CTYRAG 3 cut(s) 65, 337, 547
Sse9I AATT 6 cut(s) 155, 264, 270, 294, 357, 487
SsiI CCGC 1 cut(s) 494
SspMI CTAG 3 cut(s) 138, 282, 321
SstI GAGCTC 1 cut(s) 66
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 2 cut(s) 258, 558
TaqI TCGA 2 cut(s) 35, 511
TasI AATT 6 cut(s) 155, 264, 270, 294, 357, 487
TatI WGTACW 2 cut(s) 239, 626
Tru1I TTAA 2 cut(s) 87, 377
Tru9I TTAA 2 cut(s) 87, 377
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 414
TseI GCWGC 1 cut(s) 496
Tsp45I GTSAC 1 cut(s) 414
TspDTI ATGAA 3 cut(s) 148, 176, 263
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 1 cut(s) 172
XapI RAATTY 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 155
XspI CTAG 3 cut(s) 138, 282, 321
ZrmI AGTACT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.