Rmu_sc0003198.1_g000013

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003198.1
OG0000264
Physical Location & Seq
Forward (+)
41782 .. 45528
3747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003198.1_g000013.1.cds

Sequence Viewer

Length: 3747 bp
atggaggagagtccaattcaagagcaagaagatgcgcttctggtttcaccgactggcggaggagacccatttcacaaaaaagcctactttctgaaacccattgtccctatttcctccattgatcatgaacctccttttaagctccctcagtgcccttttcgttttgacccaaaacagtggcctttggaggttgaattccacggttggcgacaaggtcaagaagattggaattcttgggttgatcgcttggctcctattcaccaatctacatggaaaagagctggtatttatgatgccatctttaattctaagtaccaaattagaagaaagactgatttggttttcgggtttgcggagaaatggtgttctgagaccaataccttcatctttccttggggtgaagcaacgattacattggaggatgtcatggttttgggaggcttttctgtttccggggactctattttcagtccacttgaaagcattgaactaaaggaagtggaagagaggttgattaaggtaaggaaagaagttaagagagccaaggcaagcaaatggctgcagaagtttgtgaacagtgagagtgaattggagcatgaagcatttcttgccttttggttgtcaaggtatgtttttttagatggtgatagtttaatacaaaagcgtgtttttcccattgcaattcatttagctagggggactcgaattgcacttgcacagcctgttcttgctgatatttataatgatttgagtttgttcagtaatacaattgtggcttcaaatgaattaaagaccggtgatcgtgtcttgaacgtgaaactcaagtcaccatttcaattagttcaggtttgggcatgggaaagatttttggaacttaggccaatattcaatgtcatcaaatatggtgagccgagattggctcgatgggataaagcaaatggtctgagtattgaaaatttaagaagtgttttagactcagctggagatgccttcatgtggcgcccttatgccatggccattgagaactggaattttcctaaatactactcggaaaaggaaatgtgggttggtcctggtttggatgatgagttcctgcaattttccatgttcttgagggtgacgaagttagttggattcaatactaggaaacaatactttccacatcgagtagctatgcaatttggatatgatcaagacattccatgtaagattgctcaatccaaagtatccaggaagcattacagtgacaaacctgagattgtaggattctacattccatccaaactttctgagccgaatgttagtgcaagatacttgaagtggtggaatgaatcagtgtcaggtctcaaagacacaagtgaggccgctatgccccaaaagaagaaagcaaagaggatggaaggatcactagtaaggtctaaacaatccccagtaaatcctgaatatcctcttaagaaaaatttagaacgttctaaaaagaggaagagaagggagagcttatgctttaggcagagtgccccagacatcatggttgaagaaaaagaagagcttatggtttcaccaactggtggagacccatttcccaaaaaagcatactatctgaaaccagttgtgccttcctccattgaaaaacccccttttaagttccctactgaatctttctccccccttccttctgattttgagccaagaaaatggccattagaggttgatatccctggatggagagttaagggtcaaaaagatgattggaatgattgggttgatcaattggctctagtccaccaatctacgtggaagacagctggcatatatgaagccatcttcaattcgacctacgaaataagaagaaaaaacgatttggtatatggttttgcagaaaagtggtgttctgagactaatacattcatttttccttggggtgaagcaacaatcacattggaggatgttatggtgatgggaggctattctgttcttggagagtcgattttcagtcctcttgaaagcagagagctcaaggaaatagaagataaacttaatcaagagcgaacagagataaacaggggtgcgtcgcgtagaccttctactagcttatggttgaagaaattcatgaacagtgggactttcttggagcacgaagcattccttgcattttggttatcaaggtatgtatttccggatgctcgtagtacaatacaaaagcatgttttcccaattgcaattcatttagctaggggaacccgaattgcacttgcacctgctgttcttgcaagtatttataaggacttgactttgttgaaatgcgcaattgtggattcaagtaagttaaggacaggttgtgatgctataaaactcagcatcaagtcaccatttcagtttgttcaactttgggcgtgggaaagatttgtagagctgagtccaaatcccagaatgatcaattttgcgcagccaagattggctcgatgggacaaagtaagtggcgtggaagttgaaaacttgaggaaggttttagactctgccggagatggtttcaagtggcgtccttatgccttgaccattgaaaactggcagttgcctaagtactatcctgtagaggaaatgcatgtatcagattgttggggtttggatgatgagttgcattcatttttcagatgcttgagggttagtgagttagctggattcggtaccattgagcagtaccttccgcatagagtagcaatgcaatttggtttcgatcaagacattccatgcattgtggctcgatccaatcaaagtactgatatagcctggaatcattacattaaggaaattcagaatgcaaggttgtatgttccatccacgctttcaaaggcagatattagcacaagatacttgaagtggtggaaggaatcagtgtcgggtctcaaaaagtccaccatgtcaaaattagaaaattcaaaatgcatgggaggatccctacctagggctaaacctgcccctgtagatcctggttctgccccagagaaagctgtagagggttctaagaaacggaagaagaataatgatttcactcttccttctgtttctgttcctaagtactcagatgaaggtaatgattcccttgttctgccaggatttcctcccaaatgtagtataatggaagctggaggttcagtggatgaagacggactaactttatcagaaatttggaaatattgtaagaaacagaaaaatgtaaatacgagaacacgtggtcagcataagaagttagcaggtcaagttcaaagtctggcatcttcaattggagcaagttctgttgatactatgaagtcagagaggttggaagatagaggtccgatagacgaggatggaccaagtttatcagaaacttttgaaaattctaagaaacataaaaatggtgaaactagaatgtgtggtgacagtgagaaattatcaggtcaaggtcaagatctggcatcttcaattgcagaaagttctgttgacactgtaaactcagagaaattggtgacagaggacatgttgaataaagttttgattggaagattcaaggctgaaaggaacctgaaaactgtaatgaggagtaatgcaagaagttcagataatgagatggcaagcattgttgacaatgaatgtgctagcagcagctctcaaattgagaaacgggtttcagtgcttaaagctagggccagcaggcttgagagtatagttagcatgttgaaagaaaattatccttggaccaagttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

1248

Amino Acids

142.67

Weight (kDa)

8.76

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 741, 2280
AarI CACCTGC 1 cut(s) 2266
Acc16I TGCGCA 2 cut(s) 2305, 2445
Acc36I ACCTGC 3 cut(s) 2266, 2980, 3242
Acc65I GGTACC 1 cut(s) 2684
AccB1I GGYRCC 2 cut(s) 999, 2684
AccB7I CCANNNNNTGG 1 cut(s) 1568
AccI GTMKAC 1 cut(s) 2077
AccII CGCG 1 cut(s) 2074
AccIII TCCGGA 1 cut(s) 2176
AciI CCGC 4 cut(s) 57, 353, 1365, 2705
AclI AACGTT 1 cut(s) 1468
AclWI GGATC 5 cut(s) 1411, 2757, 2946, 2959, 2978
AcoI YGGCCR 2 cut(s) 1014, 1697
AcvI CACGTG 1 cut(s) 3230
AcyI GRCGYC 2 cut(s) 1000, 2539
AfaI GTAC 7 cut(s) 314, 2191, 2582, 2686, 2699, 2776, 3077
AfiI CCNNNNNNNGG 5 cut(s) 56, 996, 1568, 2961, 2962
AflII CTTAAG 1 cut(s) 1451
AflIII ACRYGT 2 cut(s) 3227, 3516
AgeI ACCGGT 1 cut(s) 794
AhlI ACTAGT 1 cut(s) 1408
AjnI CCWGG 6 cut(s) 1072, 1229, 1717, 2786, 2986, 3109
AjuI GAANNNNNNNTTGG 2 cut(s) 1050, 1082
AloI GAACNNNNNNTCC 2 cut(s) 1073, 1105
Alw21I GWGCWC 2 cut(s) 2016, 2136
Alw26I GTCTC 6 cut(s) 57, 365, 1349, 1566, 1889, 2906
AlwI GGATC 5 cut(s) 1411, 2757, 2946, 2959, 2978
Aor13HI TCCGGA 1 cut(s) 2176
AoxI GGCC 6 cut(s) 179, 878, 1014, 1362, 1697, 3684
ApeKI GCWGC 4 cut(s) 559, 2446, 3639, 3642
AsiGI ACCGGT 1 cut(s) 794
Asp700I GAANNNNTTC 2 cut(s) 603, 2105
Asp718I GGTACC 1 cut(s) 2684
AspA2I CCTAGG 1 cut(s) 2960
AspLEI GCGC 4 cut(s) 37, 1002, 2306, 2446
AspS9I GGNCC 5 cut(s) 1070, 3332, 3350, 3684, 3735
AsuC2I CCSGG 1 cut(s) 454
AsuNHI GCTAGC 1 cut(s) 3635
AvaII GGWCC 4 cut(s) 1070, 3332, 3350, 3735
AvrII CCTAGG 1 cut(s) 2960
BaeGI GKGCMC 2 cut(s) 155, 1519
BalI TGGCCA 2 cut(s) 1016, 1699
BamHI GGATCC 1 cut(s) 2951
BanI GGYRCC 2 cut(s) 999, 2684
BanII GRGCYC 1 cut(s) 2016
BbrPI CACGTG 1 cut(s) 3230
BbsI GAAGAC 2 cut(s) 1805, 3168
Bbv12I GWGCWC 2 cut(s) 2016, 2136
BbvI GCAGC 4 cut(s) 546, 2458, 3651, 3654
BciT130I CCWGG 6 cut(s) 1074, 1231, 1719, 2788, 2988, 3111
BciVI GTATCC 1 cut(s) 1237
BclI TGATCA 4 cut(s) 121, 1189, 1765, 2433
BcnI CCSGG 1 cut(s) 454
BcoDI GTCTC 6 cut(s) 57, 365, 1349, 1566, 1889, 2906
BcuI ACTAGT 1 cut(s) 1408
BfmI CTRYAG 4 cut(s) 560, 2589, 2979, 3009
BfoI RGCGCY 1 cut(s) 1003
BfrI CTTAAG 1 cut(s) 1451
BfuAI ACCTGC 3 cut(s) 2266, 2980, 3242
BfuI GTATCC 1 cut(s) 1237
BglII AGATCT 1 cut(s) 3448
BisI GCNGC 5 cut(s) 560, 1365, 2447, 3640, 3643
BlnI CCTAGG 1 cut(s) 2960
BlsI GCNGC 5 cut(s) 561, 1366, 2448, 3641, 3644
BmcAI AGTACT 3 cut(s) 2582, 2776, 3077
Bme1390I CCNGG 7 cut(s) 454, 1074, 1231, 1719, 2788, 2988, 3111
Bme18I GGWCC 4 cut(s) 1070, 3332, 3350, 3735
BmgT120I GGNCC 5 cut(s) 1070, 3332, 3350, 3684, 3735
BmiI GGNNCC 6 cut(s) 252, 1001, 2239, 2686, 2953, 3560
BmrFI CCNGG 7 cut(s) 454, 1074, 1231, 1719, 2788, 2988, 3111
BmrI ACTGGG 1 cut(s) 1424
BmsI GCATC 9 cut(s) 22, 283, 976, 2170, 2332, 2367, 2642, 3281, 3464
BmtI GCTAGC 1 cut(s) 3639
BmuI ACTGGG 1 cut(s) 1424
BpiI GAAGAC 2 cut(s) 1805, 3168
BplI GAGNNNNNCTC 2 cut(s) 904, 936
BpmI CTGGAG 2 cut(s) 1002, 3165
BpuEI CTTGAG 6 cut(s) 806, 1132, 2000, 2518, 2677, 3716
BpuMI CCSGG 1 cut(s) 454
BsaAI YACGTR 2 cut(s) 1794, 3230
BsaHI GRCGYC 2 cut(s) 1000, 2539
BsaI GGTCTC 5 cut(s) 57, 365, 1349, 1566, 2906
BsaJI CCNNGG 9 cut(s) 199, 392, 453, 543, 1011, 1717, 1916, 2960, 3731
BsaWI WCCGGW 2 cut(s) 794, 2176
BsaXI ACNNNNNCTCC 4 cut(s) 347, 377, 3138, 3168
Bsc4I CCNNNNNNNGG 5 cut(s) 56, 996, 1568, 2961, 2962
Bse118I RCCGGY 1 cut(s) 794
Bse1I ACTGG 6 cut(s) 58, 1031, 1430, 1570, 1607, 2570
Bse3DI GCAATG 2 cut(s) 675, 2724
BseAI TCCGGA 1 cut(s) 2176
BseBI CCWGG 6 cut(s) 1074, 1231, 1719, 2788, 2988, 3111
BseDI CCNNGG 9 cut(s) 199, 392, 453, 543, 1011, 1717, 1916, 2960, 3731
BseLI CCNNNNNNNGG 5 cut(s) 56, 996, 1568, 2961, 2962
BseMI GCAATG 2 cut(s) 675, 2724
BseNI ACTGG 6 cut(s) 58, 1031, 1430, 1570, 1607, 2570
BseRI GAGGAG 3 cut(s) 20, 75, 3592
BseSI GKGCMC 2 cut(s) 155, 1519
BseXI GCAGC 4 cut(s) 546, 2458, 3651, 3654
Bsh1236I CGCG 1 cut(s) 2074
BshFI GGCC 6 cut(s) 181, 880, 1016, 1364, 1699, 3686
BshNI GGYRCC 2 cut(s) 999, 2684
BshTI ACCGGT 1 cut(s) 794
BsiHKAI GWGCWC 2 cut(s) 2016, 2136
BsiSI CCGG 4 cut(s) 453, 795, 2177, 2520
BslFI GGGAC 5 cut(s) 89, 470, 712, 2134, 2480
BslI CCNNNNNNNGG 5 cut(s) 56, 996, 1568, 2961, 2962
BsmAI GTCTC 6 cut(s) 57, 365, 1349, 1566, 1889, 2906
BsmFI GGGAC 5 cut(s) 89, 470, 712, 2134, 2480
BsmI GAATGC 3 cut(s) 2141, 2638, 2821
BsnI GGCC 6 cut(s) 181, 880, 1016, 1364, 1699, 3686
Bso31I GGTCTC 5 cut(s) 57, 365, 1349, 1566, 2906
Bsp1286I GDGCHC 4 cut(s) 155, 1519, 2016, 2136
Bsp13I TCCGGA 1 cut(s) 2176
Bsp19I CCATGG 1 cut(s) 1011
BspACI CCGC 4 cut(s) 57, 353, 1365, 2705
BspANI GGCC 6 cut(s) 181, 880, 1016, 1364, 1699, 3686
BspEI TCCGGA 1 cut(s) 2176
BspFNI CGCG 1 cut(s) 2074
BspHI TCATGA 2 cut(s) 124, 2109
BspLI GGNNCC 6 cut(s) 252, 1001, 2239, 2686, 2953, 3560
BspMAI CTGCAG 1 cut(s) 564
BspMI ACCTGC 3 cut(s) 2266, 2980, 3242
BspOI GCTAGC 1 cut(s) 3639
BspPI GGATC 5 cut(s) 1411, 2757, 2946, 2959, 2978
BspQI GCTCTTC 1 cut(s) 1539
BspT107I GGYRCC 2 cut(s) 999, 2684
BspTI CTTAAG 1 cut(s) 1451
BspTNI GGTCTC 5 cut(s) 57, 365, 1349, 1566, 2906
BsrDI GCAATG 2 cut(s) 675, 2724
BsrFI RCCGGY 1 cut(s) 794
BsrI ACTGG 6 cut(s) 58, 1031, 1430, 1570, 1607, 2570
BssAI RCCGGY 1 cut(s) 794
BssECI CCNNGG 9 cut(s) 199, 392, 453, 543, 1011, 1717, 1916, 2960, 3731
BssNI GRCGYC 2 cut(s) 1000, 2539
BssT1I CCWWGG 6 cut(s) 392, 543, 1011, 1916, 2960, 3731
Bst2UI CCWGG 6 cut(s) 1074, 1231, 1719, 2788, 2988, 3111
Bst4CI ACNGT 8 cut(s) 177, 203, 578, 1244, 2117, 3422, 3487, 3571
Bst6I CTCTTC 4 cut(s) 498, 1478, 1539, 3057
BstACI GRCGYC 2 cut(s) 1000, 2539
BstAFI CTTAAG 1 cut(s) 1451
BstAPI GCANNNNNTGC 2 cut(s) 608, 2147
BstBAI YACGTR 2 cut(s) 1794, 3230
BstC8I GCNNGC 6 cut(s) 550, 1807, 3613, 3637, 3688, 3692
BstDSI CCRYGG 2 cut(s) 199, 1011
BstFNI CGCG 1 cut(s) 2074
BstH2I RGCGCY 1 cut(s) 1003
BstHHI GCGC 4 cut(s) 37, 1002, 2306, 2446
BstMAI GTCTC 6 cut(s) 57, 365, 1349, 1566, 1889, 2906
BstMWI GCNNNNNNNGC 5 cut(s) 608, 986, 2147, 2267, 2972
BstNI CCWGG 6 cut(s) 1074, 1231, 1719, 2788, 2988, 3111
BstNSI RCATGY 4 cut(s) 2207, 2606, 3520, 3715
BstSCI CCNGG 7 cut(s) 452, 1072, 1229, 1717, 2786, 2986, 3109
BstSFI CTRYAG 4 cut(s) 560, 2589, 2979, 3009
BstSLI GKGCMC 2 cut(s) 155, 1519
BstUI CGCG 1 cut(s) 2074
BstV1I GCAGC 4 cut(s) 546, 2458, 3651, 3654
BstV2I GAAGAC 2 cut(s) 1805, 3168
BstX2I RGATCY 3 cut(s) 2951, 2983, 3448
BstXI CCANNNNNNTGG 2 cut(s) 177, 1695
BstYI RGATCY 3 cut(s) 2951, 2983, 3448
BsuI GTATCC 1 cut(s) 1237
BsuRI GGCC 6 cut(s) 181, 880, 1016, 1364, 1699, 3686
BtgI CCRYGG 2 cut(s) 199, 1011
BveI ACCTGC 3 cut(s) 2266, 2980, 3242
Cac8I GCNNGC 6 cut(s) 550, 1807, 3613, 3637, 3688, 3692
CciI TCATGA 2 cut(s) 124, 2109
CfoI GCGC 4 cut(s) 37, 1002, 2306, 2446
Cfr10I RCCGGY 1 cut(s) 794
Cfr13I GGNCC 5 cut(s) 1070, 3332, 3350, 3684, 3735
CseI GACGC 2 cut(s) 2058, 2528
Csp6I GTAC 7 cut(s) 313, 2190, 2581, 2685, 2698, 2775, 3076
CspAI ACCGGT 1 cut(s) 794
CspCI CAANNNNNGTGG 4 cut(s) 1775, 1810, 2458, 2493
CviQI GTAC 7 cut(s) 313, 2190, 2581, 2685, 2698, 2775, 3076
DinI GGCGCC 1 cut(s) 1001
EaeI YGGCCR 2 cut(s) 1014, 1697
Eam1104I CTCTTC 4 cut(s) 498, 1478, 1539, 3057
EarI CTCTTC 4 cut(s) 498, 1478, 1539, 3057
EciI GGCGGA 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 2014
Eco130I CCWWGG 6 cut(s) 392, 543, 1011, 1916, 2960, 3731
Eco24I GRGCYC 1 cut(s) 2016
Eco31I GGTCTC 5 cut(s) 57, 365, 1349, 1566, 2906
Eco32I GATATC 1 cut(s) 1714
Eco47I GGWCC 4 cut(s) 1070, 3332, 3350, 3735
Eco53kI GAGCTC 1 cut(s) 2014
Eco72I CACGTG 1 cut(s) 3230
EcoICRI GAGCTC 1 cut(s) 2014
EcoRI GAATTC 2 cut(s) 194, 229
EcoRII CCWGG 6 cut(s) 1072, 1229, 1717, 2786, 2986, 3109
EcoRV GATATC 1 cut(s) 1714
EcoT14I CCWWGG 6 cut(s) 392, 543, 1011, 1916, 2960, 3731
EcoT22I ATGCAT 3 cut(s) 2604, 2753, 2945
EcoT38I GRGCYC 1 cut(s) 2016
EgeI GGCGCC 1 cut(s) 1001
EheI GGCGCC 1 cut(s) 1001
ErhI CCWWGG 6 cut(s) 392, 543, 1011, 1916, 2960, 3731
FaqI GGGAC 5 cut(s) 89, 470, 712, 2134, 2480
FbaI TGATCA 4 cut(s) 121, 1189, 1765, 2433
FblI GTMKAC 1 cut(s) 2077
Fnu4HI GCNGC 5 cut(s) 560, 1365, 2447, 3640, 3643
FriOI GRGCYC 1 cut(s) 2016
Fsp4HI GCNGC 5 cut(s) 560, 1365, 2447, 3640, 3643
FspI TGCGCA 2 cut(s) 2305, 2445
GlaI GCGC 4 cut(s) 36, 1001, 2305, 2445
GluI GCNGC 5 cut(s) 560, 1365, 2447, 3640, 3643
GsuI CTGGAG 2 cut(s) 1002, 3165
HaeII RGCGCY 1 cut(s) 1003
HaeIII GGCC 6 cut(s) 181, 880, 1016, 1364, 1699, 3686
HapII CCGG 4 cut(s) 453, 795, 2177, 2520
HgaI GACGC 2 cut(s) 2058, 2528
HhaI GCGC 4 cut(s) 37, 1002, 2306, 2446
Hin1I GRCGYC 2 cut(s) 1000, 2539
Hin6I GCGC 4 cut(s) 35, 1000, 2304, 2444
HinP1I GCGC 4 cut(s) 35, 1000, 2304, 2444
HincII GTYRAC 2 cut(s) 3481, 3622
HindII GTYRAC 2 cut(s) 3481, 3622
HpaII CCGG 4 cut(s) 453, 795, 2177, 2520
Hpy166II GTNNAC 8 cut(s) 473, 574, 1783, 2078, 2913, 3481, 3490, 3622
Hpy8I GTNNAC 8 cut(s) 473, 574, 1783, 2078, 2913, 3481, 3490, 3622
Hpy99I CGWCG 1 cut(s) 2074
HpyCH4III ACNGT 8 cut(s) 177, 203, 578, 1244, 2117, 3422, 3487, 3571
HpyCH4IV ACGT 4 cut(s) 813, 1468, 1793, 3229
HpyF10VI GCNNNNNNNGC 5 cut(s) 608, 986, 2147, 2267, 2972
HpySE526I ACGT 4 cut(s) 813, 1468, 1793, 3229
Hsp92I GRCGYC 2 cut(s) 1000, 2539
HspAI GCGC 4 cut(s) 35, 1000, 2304, 2444
KasI GGCGCC 1 cut(s) 999
Kpn2I TCCGGA 1 cut(s) 2176
KpnI GGTACC 1 cut(s) 2688
Ksp22I TGATCA 4 cut(s) 121, 1189, 1765, 2433
LguI GCTCTTC 1 cut(s) 1539
LmnI GCTCC 5 cut(s) 147, 256, 592, 2131, 3284
Lsp1109I GCAGC 4 cut(s) 546, 2458, 3651, 3654
LweI GCATC 9 cut(s) 22, 283, 976, 2170, 2332, 2367, 2642, 3281, 3464
MaeII ACGT 4 cut(s) 813, 1468, 1793, 3229
MaeIII GTNAC 6 cut(s) 825, 1117, 1244, 2364, 3416, 3505
MfeI CAATTG 6 cut(s) 768, 1769, 2214, 2307, 3279, 3462
MflI RGATCY 3 cut(s) 2951, 2983, 3448
MhlI GDGCHC 4 cut(s) 155, 1519, 2016, 2136
MlsI TGGCCA 2 cut(s) 1016, 1699
MluNI TGGCCA 2 cut(s) 1016, 1699
Mly113I GGCGCC 1 cut(s) 1000
MlyI GAGTC 7 cut(s) 19, 452, 694, 968, 1991, 2425, 2507
MmeI TCCRAC 2 cut(s) 1111, 3300
Mox20I TGGCCA 2 cut(s) 1016, 1699
Mph1103I ATGCAT 3 cut(s) 2604, 2753, 2945
MroI TCCGGA 1 cut(s) 2176
MroXI GAANNNNTTC 2 cut(s) 603, 2105
MscI TGGCCA 2 cut(s) 1016, 1699
MslI CAYNNNNRTG 2 cut(s) 1242, 3393
Msp20I TGGCCA 2 cut(s) 1016, 1699
MspA1I CMGCKG 2 cut(s) 980, 1805
MspCI CTTAAG 1 cut(s) 1451
MspI CCGG 4 cut(s) 453, 795, 2177, 2520
MspR9I CCNGG 7 cut(s) 454, 1074, 1231, 1719, 2788, 2988, 3111
MunI CAATTG 6 cut(s) 768, 1769, 2214, 2307, 3279, 3462
Mva1269I GAATGC 3 cut(s) 2141, 2638, 2821
MvaI CCWGG 6 cut(s) 1074, 1231, 1719, 2788, 2988, 3111
MvnI CGCG 1 cut(s) 2074
MwoI GCNNNNNNNGC 5 cut(s) 608, 986, 2147, 2267, 2972
NarI GGCGCC 1 cut(s) 1000
NciI CCSGG 1 cut(s) 454
NcoI CCATGG 1 cut(s) 1011
NheI GCTAGC 1 cut(s) 3635
NlaIV GGNNCC 6 cut(s) 252, 1001, 2239, 2686, 2953, 3560
NmeAIII GCCGAG 1 cut(s) 936
NmuCI GTSAC 6 cut(s) 825, 1117, 1244, 2364, 3416, 3505
NsbI TGCGCA 2 cut(s) 2305, 2445
NsiI ATGCAT 3 cut(s) 2604, 2753, 2945
NspI RCATGY 4 cut(s) 2207, 2606, 3520, 3715
PagI TCATGA 2 cut(s) 124, 2109
PaqCI CACCTGC 1 cut(s) 2266
PciI ACATGT 1 cut(s) 3516
PciSI GCTCTTC 1 cut(s) 1539
PctI GAATGC 3 cut(s) 2141, 2638, 2821
PdmI GAANNNNTTC 2 cut(s) 603, 2105
PflFI GACNNNGTC 1 cut(s) 213
PflMI CCANNNNNTGG 1 cut(s) 1568
PfoI TCCNGGA 1 cut(s) 1229
PinAI ACCGGT 1 cut(s) 794
PkrI GCNGC 5 cut(s) 561, 1366, 2448, 3641, 3644
PleI GAGTC 7 cut(s) 18, 452, 694, 968, 1990, 2424, 2507
PluTI GGCGCC 1 cut(s) 1003
PmaCI CACGTG 1 cut(s) 3230
PmlI CACGTG 1 cut(s) 3230
PpsI GAGTC 7 cut(s) 18, 452, 694, 968, 1990, 2424, 2507
Ppu21I YACGTR 2 cut(s) 1794, 3230
PscI ACATGT 1 cut(s) 3516
PsiI TTATAA 2 cut(s) 741, 2280
Psp124BI GAGCTC 1 cut(s) 2016
Psp1406I AACGTT 1 cut(s) 1468
Psp6I CCWGG 6 cut(s) 1072, 1229, 1717, 2786, 2986, 3109
PspCI CACGTG 1 cut(s) 3230
PspGI CCWGG 6 cut(s) 1072, 1229, 1717, 2786, 2986, 3109
PspN4I GGNNCC 6 cut(s) 252, 1001, 2239, 2686, 2953, 3560
PspPI GGNCC 5 cut(s) 1070, 3332, 3350, 3684, 3735
PstI CTGCAG 1 cut(s) 564
PsuI RGATCY 3 cut(s) 2951, 2983, 3448
PsyI GACNNNGTC 1 cut(s) 213
PvuII CAGCTG 2 cut(s) 980, 1805
RsaI GTAC 7 cut(s) 314, 2191, 2582, 2686, 2699, 2776, 3077
RsaNI GTAC 7 cut(s) 313, 2190, 2581, 2685, 2698, 2775, 3076
RseI CAYNNNNRTG 2 cut(s) 1242, 3393
SacI GAGCTC 1 cut(s) 2016
SapI GCTCTTC 1 cut(s) 1539
SatI GCNGC 5 cut(s) 560, 1365, 2447, 3640, 3643
Sau96I GGNCC 5 cut(s) 1070, 3332, 3350, 3684, 3735
ScaI AGTACT 3 cut(s) 2582, 2776, 3077
SchI GAGTC 7 cut(s) 19, 452, 694, 968, 1991, 2425, 2507
ScrFI CCNGG 7 cut(s) 454, 1074, 1231, 1719, 2788, 2988, 3111
SduI GDGCHC 4 cut(s) 155, 1519, 2016, 2136
SfaNI GCATC 9 cut(s) 22, 283, 976, 2170, 2332, 2367, 2642, 3281, 3464
SfcI CTRYAG 4 cut(s) 560, 2589, 2979, 3009
SfoI GGCGCC 1 cut(s) 1001
SinI GGWCC 4 cut(s) 1070, 3332, 3350, 3735
SmiMI CAYNNNNRTG 2 cut(s) 1242, 3393
SmlI CTYRAG 7 cut(s) 821, 1111, 1451, 2015, 2497, 2656, 3695
SmoI CTYRAG 7 cut(s) 821, 1111, 1451, 2015, 2497, 2656, 3695
SpeI ACTAGT 1 cut(s) 1408
SsiI CCGC 4 cut(s) 57, 353, 1365, 2705
SspDI GGCGCC 1 cut(s) 999
SspI AATATT 2 cut(s) 885, 3194
SstI GAGCTC 1 cut(s) 2016
StyD4I CCNGG 7 cut(s) 452, 1072, 1229, 1717, 2786, 2986, 3109
StyI CCWWGG 6 cut(s) 392, 543, 1011, 1916, 2960, 3731
TaaI ACNGT 8 cut(s) 177, 203, 578, 1244, 2117, 3422, 3487, 3571
TaiI ACGT 4 cut(s) 816, 1471, 1796, 3232
TaqI TCGA 8 cut(s) 703, 922, 1165, 1832, 1985, 2461, 2733, 2761
TatI WGTACW 4 cut(s) 2189, 2580, 2774, 3075
TauI GCSGC 1 cut(s) 1367
TseFI GTSAC 6 cut(s) 825, 1117, 1244, 2364, 3416, 3505
TseI GCWGC 4 cut(s) 559, 2446, 3639, 3642
Tsp45I GTSAC 6 cut(s) 825, 1117, 1244, 2364, 3416, 3505
TspGWI ACGGA 2 cut(s) 3043, 3180
Tth111I GACNNNGTC 1 cut(s) 213
Van91I CCANNNNNTGG 1 cut(s) 1568
Vha464I CTTAAG 1 cut(s) 1451
VpaK11BI GGWCC 4 cut(s) 1070, 3332, 3350, 3735
XceI RCATGY 4 cut(s) 2207, 2606, 3520, 3715
XmaJI CCTAGG 1 cut(s) 2960
XmiI GTMKAC 1 cut(s) 2077
XmnI GAANNNNTTC 2 cut(s) 603, 2105
ZrmI AGTACT 3 cut(s) 2582, 2776, 3077
Zsp2I ATGCAT 3 cut(s) 2604, 2753, 2945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.