Rh5AG261500

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000264
Physical Location & Seq
Forward (+)
34221676 .. 34222674
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG261500.1

Sequence Viewer

Length: 636 bp
ATGGCATTTGAAGGTCAGTTTCCGTGGATGGCATCTCGAACAAAACGACTGGAGAACTTCTGTCGATCACATGGCTTCTCTCCACCAATCTACCTGGAAGAGTGCTGGTATGTTTTTCCTGAGGCTTGTAATGCCTTACACAAACGTGTATTTCCAATTGCAATTCTTTTAGCTACAGGTACCCGCATTACGCTTGCACCGGCTGTTCTTGCCTGCATTTATAGAGATTTGAGTGTGCTGAAAAGGACTATTGTAGCTTCAAATGAATTAAAGGGCAGGAATGATGTTTCAAAACTCAAACTCAAGTCACCATTTCATTTAGTACAGGTTTGGCCATGGGAAAGATTTCTGGAATTTAGGCCAGTACCCAATGTTATTAGTTATGCTGAGCCAAGATTGGCCCTATGGACCAGAGTAGATGGTCTAAAAGTTGTAAATGTGAGGACAGTTTTAGAATCAGCTGGAGAAGTTTTTGTTTGGCGCCCTTATGCCATGCCAATTGAGAACTGGAACTTGCCTAAATACTATGACAAGAAGGAAAAGTGGGTTCGCCCGGGTCTGGAGGATGAATTATTGTCATTTGCCATGTGCTTGAGGGCGACTGAGTTAGCTGGATTAGATACTAGAGAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

211

Amino Acids

24.52

Weight (kDa)

9.11

Isoelectric Point (pI)

52.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 37 - 211 2.5e-36 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 179
AccB1I GGYRCC 2 cut(s) 179, 480
AciI CCGC 1 cut(s) 184
AcoI YGGCCR 1 cut(s) 332
AcsI RAATTY 1 cut(s) 353
AcyI GRCGYC 1 cut(s) 481
AfaI GTAC 3 cut(s) 181, 324, 366
AfiI CCNNNNNNNGG 1 cut(s) 559
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 3 cut(s) 11, 261, 291
AjnI CCWGG 1 cut(s) 93
AleI CACNNNNGTG 1 cut(s) 144
AluBI AGCT 4 cut(s) 173, 257, 461, 611
AluI AGCT 4 cut(s) 173, 257, 461, 611
Ama87I CYCGRG 1 cut(s) 553
AoxI GGCC 3 cut(s) 332, 359, 399
ApoI RAATTY 1 cut(s) 353
Asp700I GAANNNNTTC 1 cut(s) 345
Asp718I GGTACC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 483
AspS9I GGNCC 2 cut(s) 400, 408
AsuC2I CCSGG 2 cut(s) 554, 555
AsuHPI GGTGA 1 cut(s) 300
AvaI CYCGRG 1 cut(s) 553
AvaII GGWCC 1 cut(s) 408
AxyI CCTNAGG 1 cut(s) 120
BalI TGGCCA 1 cut(s) 334
BanI GGYRCC 2 cut(s) 179, 480
BccI CCATC 2 cut(s) 22, 413
BciT130I CCWGG 1 cut(s) 95
BcnI CCSGG 2 cut(s) 554, 555
BfaI CTAG 1 cut(s) 624
BfmI CTRYAG 1 cut(s) 174
BfoI RGCGCY 1 cut(s) 484
BlpI GCTNAGC 1 cut(s) 387
Bme1390I CCNGG 3 cut(s) 95, 554, 555
Bme18I GGWCC 1 cut(s) 408
BmeT110I CYCGRG 1 cut(s) 553
BmgT120I GGNCC 2 cut(s) 400, 408
BmiI GGNNCC 2 cut(s) 181, 482
BmrFI CCNGG 3 cut(s) 95, 554, 555
BmsI GCATC 1 cut(s) 41
BpmI CTGGAG 3 cut(s) 71, 483, 581
Bpu1102I GCTNAGC 1 cut(s) 387
BpuEI CTTGAG 2 cut(s) 287, 613
BpuMI CCSGG 2 cut(s) 554, 555
BsaHI GRCGYC 1 cut(s) 481
BsaJI CCNNGG 3 cut(s) 23, 335, 553
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse118I RCCGGY 1 cut(s) 199
Bse1I ACTGG 3 cut(s) 54, 362, 512
Bse21I CCTNAGG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 3 cut(s) 23, 335, 553
BseGI GGATG 2 cut(s) 33, 571
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMII CTCAG 3 cut(s) 111, 378, 594
BseNI ACTGG 3 cut(s) 54, 362, 512
BshFI GGCC 3 cut(s) 334, 361, 401
BshNI GGYRCC 2 cut(s) 179, 480
BsiHKCI CYCGRG 1 cut(s) 553
BsiSI CCGG 2 cut(s) 200, 554
BslI CCNNNNNNNGG 1 cut(s) 559
BsnI GGCC 3 cut(s) 334, 361, 401
BsoBI CYCGRG 1 cut(s) 553
Bsp143I GATC 1 cut(s) 65
Bsp1720I GCTNAGC 1 cut(s) 387
Bsp19I CCATGG 1 cut(s) 335
BspACI CCGC 1 cut(s) 184
BspANI GGCC 3 cut(s) 334, 361, 401
BspCNI CTCAG 3 cut(s) 112, 379, 595
BspLI GGNNCC 2 cut(s) 181, 482
BspT107I GGYRCC 2 cut(s) 179, 480
BsrFI RCCGGY 1 cut(s) 199
BsrI ACTGG 3 cut(s) 54, 362, 512
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 3 cut(s) 23, 335, 553
BssMI GATC 1 cut(s) 65
BssNI GRCGYC 1 cut(s) 481
BssT1I CCWWGG 1 cut(s) 335
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 448
Bst6I CTCTTC 1 cut(s) 93
BstACI GRCGYC 1 cut(s) 481
BstC8I GCNNGC 2 cut(s) 195, 214
BstDEI CTNAG 3 cut(s) 120, 387, 603
BstDSI CCRYGG 2 cut(s) 23, 335
BstF5I GGATG 2 cut(s) 33, 571
BstH2I RGCGCY 1 cut(s) 484
BstHHI GCGC 1 cut(s) 483
BstKTI GATC 1 cut(s) 68
BstMBI GATC 1 cut(s) 65
BstMWI GCNNNNNNNGC 2 cut(s) 131, 209
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 3 cut(s) 93, 552, 553
BstSFI CTRYAG 1 cut(s) 174
Bsu36I CCTNAGG 1 cut(s) 120
BsuRI GGCC 3 cut(s) 334, 361, 401
BtgI CCRYGG 2 cut(s) 23, 335
BtsCI GGATG 2 cut(s) 33, 571
Cac8I GCNNGC 2 cut(s) 195, 214
CfoI GCGC 1 cut(s) 483
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 400, 408
Cfr9I CCCGGG 1 cut(s) 553
Csp6I GTAC 3 cut(s) 180, 323, 365
CviAII CATG 4 cut(s) 71, 336, 493, 586
CviQI GTAC 3 cut(s) 180, 323, 365
DdeI CTNAG 3 cut(s) 120, 387, 603
DinI GGCGCC 1 cut(s) 482
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
EaeI YGGCCR 1 cut(s) 332
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 408
Eco81I CCTNAGG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 553
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 335
EgeI GGCGCC 1 cut(s) 482
EheI GGCGCC 1 cut(s) 482
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 4 cut(s) 74, 339, 496, 589
FatI CATG 4 cut(s) 70, 335, 492, 585
FauI CCCGC 1 cut(s) 191
FokI GGATG 2 cut(s) 40, 578
FspBI CTAG 1 cut(s) 624
GlaI GCGC 1 cut(s) 482
GsuI CTGGAG 3 cut(s) 71, 483, 581
HaeII RGCGCY 1 cut(s) 484
HaeIII GGCC 3 cut(s) 334, 361, 401
HapII CCGG 2 cut(s) 200, 554
HhaI GCGC 1 cut(s) 483
Hin1I GRCGYC 1 cut(s) 481
Hin1II CATG 4 cut(s) 74, 339, 496, 589
Hin6I GCGC 1 cut(s) 481
HinP1I GCGC 1 cut(s) 481
HinfI GANTC 1 cut(s) 455
HpaII CCGG 2 cut(s) 200, 554
HphI GGTGA 1 cut(s) 300
Hpy188III TCNNGA 4 cut(s) 36, 119, 350, 560
HpyAV CCTTC 2 cut(s) 5, 529
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 3 cut(s) 161, 197, 216
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 209
HpyF3I CTNAG 3 cut(s) 120, 387, 603
HpySE526I ACGT 1 cut(s) 145
Hsp92I GRCGYC 1 cut(s) 481
Hsp92II CATG 4 cut(s) 74, 339, 496, 589
HspAI GCGC 1 cut(s) 481
KasI GGCGCC 1 cut(s) 480
KpnI GGTACC 1 cut(s) 183
Kzo9I GATC 1 cut(s) 65
LweI GCATC 1 cut(s) 41
MaeI CTAG 1 cut(s) 624
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 306
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 1 cut(s) 110
MfeI CAATTG 2 cut(s) 156, 498
MlsI TGGCCA 1 cut(s) 334
MluCI AATT 6 cut(s) 156, 162, 266, 353, 498, 569
MluNI TGGCCA 1 cut(s) 334
Mly113I GGCGCC 1 cut(s) 481
MnlI CCTC 4 cut(s) 115, 435, 556, 588
Mox20I TGGCCA 1 cut(s) 334
MroXI GAANNNNTTC 1 cut(s) 345
MscI TGGCCA 1 cut(s) 334
MseI TTAA 1 cut(s) 269
MslI CAYNNNNRTG 1 cut(s) 144
Msp20I TGGCCA 1 cut(s) 334
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 2 cut(s) 200, 554
MspR9I CCNGG 3 cut(s) 95, 554, 555
MunI CAATTG 2 cut(s) 156, 498
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 131, 209
NarI GGCGCC 1 cut(s) 481
NciI CCSGG 2 cut(s) 554, 555
NcoI CCATGG 1 cut(s) 335
NdeII GATC 1 cut(s) 65
NlaIII CATG 4 cut(s) 74, 339, 496, 589
NlaIV GGNNCC 2 cut(s) 181, 482
NmuCI GTSAC 1 cut(s) 306
OliI CACNNNNGTG 1 cut(s) 144
PcsI WCGNNNNNNNCGW 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 1 cut(s) 455
PluTI GGCGCC 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 2 cut(s) 181, 482
PspPI GGNCC 2 cut(s) 400, 408
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 3 cut(s) 181, 324, 366
RsaNI GTAC 3 cut(s) 180, 323, 365
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 1 cut(s) 269
Sau3AI GATC 1 cut(s) 65
Sau96I GGNCC 2 cut(s) 400, 408
ScrFI CCNGG 3 cut(s) 95, 554, 555
SetI ASST 9 cut(s) 16, 96, 148, 175, 181, 259, 330, 463, 613
SfaNI GCATC 1 cut(s) 41
SfcI CTRYAG 1 cut(s) 174
SfoI GGCGCC 1 cut(s) 482
SinI GGWCC 1 cut(s) 408
SmaI CCCGGG 1 cut(s) 555
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 2 cut(s) 302, 592
SmoI CTYRAG 2 cut(s) 302, 592
Sse9I AATT 6 cut(s) 156, 162, 266, 353, 498, 569
SsiI CCGC 1 cut(s) 184
SspDI GGCGCC 1 cut(s) 480
SspMI CTAG 1 cut(s) 624
StyD4I CCNGG 3 cut(s) 93, 552, 553
StyI CCWWGG 1 cut(s) 335
TaaI ACNGT 1 cut(s) 448
TaiI ACGT 1 cut(s) 148
TaqI TCGA 2 cut(s) 37, 64
TasI AATT 6 cut(s) 156, 162, 266, 353, 498, 569
TatI WGTACW 1 cut(s) 322
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TseFI GTSAC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 306
TspDTI ATGAA 3 cut(s) 279, 305, 582
TspGWI ACGGA 1 cut(s) 12
TspMI CCCGGG 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 408
XapI RAATTY 1 cut(s) 353
XcmI CCANNNNNNNNNTGG 1 cut(s) 504
XmaI CCCGGG 1 cut(s) 553
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.