Rmu_sc0017397.1_g000004

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017397.1
OG0000264
Physical Location & Seq
Reverse (-)
6091 .. 7291
1201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017397.1_g000004.1.cds

Sequence Viewer

Length: 1083 bp
atgattaaagagaaacaagacctcatgatttcaccaactggcggagacccatttcacaaaacagcccgcttcctcaaacccacttcgccttcctccattgatgaaccttttctcaagctccctgattccttctcctccctccctccacatttggaccctacaagttggaatttgaaagttgaattccctggatggcaacacgagaaatggtgctctgaaaccaacaccttcatttttccatggggtgaaaccacaatcacattggaggatgttatggttttgggagactctattttcagtcctattcaaaccagagaagtgaaagaaatagaagacaaacttgagaaagagcgaggggaaattattagaagatgtaagaaggcccagacaagcacgtggttcaagaagttcatcaacagtgggagtgaattcgagcacgaagcatttcttgcctattggctgtccaggtatgttttcaacagtcgaacagtttataggcatgttttatcgattgcaattcgtttagctaggggaacgaaaatttcgcttgcaccatctgttcttgccagcatttataaagatttgggtttactgggaagtgcaattgtagatttaagtaaactaacgagtagtgatgatactatagaattgaacctcaggtcaccattgcagtttgttcaagtttgggcatgggaaagagtgttggaacttagtccattggccaatgttgtcaataatgctgagccaagattggctcgatgggatagagtaaatggtttaagtgtgaaagatttgaggagggttttaaactatgccggagaggatttcatgtggcgcccttatgccatggccattgagaactcaaattttccaaaatactatttggaaaaggaagagtgggttggtcctggtttggatgatgagttcctgtcatttgccatatgcttgagggcgactgagttaaatggaattggtactgcagagcaataccttccgcatagggtagctaggcagtttggatttgatcaagacattcctcgttttgttgctcgagcctttcttttgacacaatccttaccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

360

Amino Acids

41.37

Weight (kDa)

5.97

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
AccB1I GGYRCC 1 cut(s) 834
AciI CCGC 3 cut(s) 42, 67, 995
AcoI YGGCCR 2 cut(s) 720, 849
AcsI RAATTY 5 cut(s) 169, 182, 428, 540, 865
AcvI CACGTG 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 835
AfaI GTAC 1 cut(s) 976
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 7 cut(s) 175, 182, 308, 403, 478, 652, 680
AjnI CCWGG 3 cut(s) 187, 464, 907
AjuI GAANNNNNNNTTGG 2 cut(s) 885, 917
AloI GAACNNNNNNTCC 2 cut(s) 908, 940
AluBI AGCT 3 cut(s) 118, 527, 1007
AluI AGCT 3 cut(s) 118, 527, 1007
Alw21I GWGCWC 2 cut(s) 215, 438
Alw26I GTCTC 2 cut(s) 39, 279
Ama87I CYCGRG 1 cut(s) 1050
AoxI GGCC 3 cut(s) 381, 720, 849
ApoI RAATTY 5 cut(s) 169, 182, 428, 540, 865
Asp700I GAANNNNTTC 2 cut(s) 108, 444
AspLEI GCGC 1 cut(s) 837
AspS9I GGNCC 3 cut(s) 154, 382, 905
AsuHPI GGTGA 3 cut(s) 24, 257, 654
AvaI CYCGRG 1 cut(s) 1050
AvaII GGWCC 2 cut(s) 154, 905
AxyI CCTNAGG 1 cut(s) 656
BalI TGGCCA 2 cut(s) 722, 851
BanI GGYRCC 1 cut(s) 834
BauI CACGAG 1 cut(s) 200
BbrPI CACGTG 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 339
Bbv12I GWGCWC 2 cut(s) 215, 438
BccI CCATC 3 cut(s) 186, 562, 753
BciT130I CCWGG 3 cut(s) 189, 466, 909
BclI TGATCA 1 cut(s) 1024
BcoDI GTCTC 2 cut(s) 39, 279
BfaI CTAG 2 cut(s) 528, 1008
BfmI CTRYAG 2 cut(s) 642, 978
BfoI RGCGCY 1 cut(s) 838
BlpI GCTNAGC 1 cut(s) 741
Bme1390I CCNGG 3 cut(s) 189, 466, 909
Bme18I GGWCC 2 cut(s) 154, 905
BmeT110I CYCGRG 1 cut(s) 1050
BmgT120I GGNCC 3 cut(s) 154, 382, 905
BmiI GGNNCC 2 cut(s) 156, 836
BmrFI CCNGG 3 cut(s) 189, 466, 909
BmrI ACTGGG 1 cut(s) 602
BmuI ACTGGG 1 cut(s) 602
BpiI GAAGAC 1 cut(s) 339
Bpu1102I GCTNAGC 1 cut(s) 741
BpuEI CTTGAG 3 cut(s) 98, 362, 967
Bsa29I ATCGAT 1 cut(s) 509
BsaAI YACGTR 1 cut(s) 396
BsaHI GRCGYC 1 cut(s) 835
BsaI GGTCTC 1 cut(s) 39
BsaJI CCNNGG 3 cut(s) 187, 239, 846
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse1I ACTGG 2 cut(s) 43, 597
Bse21I CCTNAGG 1 cut(s) 656
Bse3DI GCAATG 1 cut(s) 665
BseBI CCWGG 3 cut(s) 189, 466, 909
BseCI ATCGAT 1 cut(s) 509
BseDI CCNNGG 3 cut(s) 187, 239, 846
BseGI GGATG 3 cut(s) 197, 274, 922
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 665
BseMII CTCAG 3 cut(s) 670, 732, 948
BseNI ACTGG 2 cut(s) 43, 597
BseRI GAGGAG 2 cut(s) 124, 811
BshFI GGCC 3 cut(s) 383, 722, 851
BshNI GGYRCC 1 cut(s) 834
BshVI ATCGAT 1 cut(s) 509
BsiHKAI GWGCWC 2 cut(s) 215, 438
BsiHKCI CYCGRG 1 cut(s) 1050
BsiSI CCGG 1 cut(s) 816
BslI CCNNNNNNNGG 1 cut(s) 41
BsmAI GTCTC 2 cut(s) 39, 279
BsnI GGCC 3 cut(s) 383, 722, 851
Bso31I GGTCTC 1 cut(s) 39
BsoBI CYCGRG 1 cut(s) 1050
Bsp1286I GDGCHC 2 cut(s) 215, 438
Bsp143I GATC 1 cut(s) 1024
Bsp1720I GCTNAGC 1 cut(s) 741
Bsp19I CCATGG 2 cut(s) 239, 846
BspACI CCGC 3 cut(s) 42, 67, 995
BspANI GGCC 3 cut(s) 383, 722, 851
BspCNI CTCAG 3 cut(s) 669, 733, 949
BspDI ATCGAT 1 cut(s) 509
BspHI TCATGA 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 156, 836
BspMAI CTGCAG 1 cut(s) 982
BspT107I GGYRCC 1 cut(s) 834
BspTNI GGTCTC 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 665
BsrI ACTGG 2 cut(s) 43, 597
BssECI CCNNGG 3 cut(s) 187, 239, 846
BssMI GATC 1 cut(s) 1024
BssNI GRCGYC 1 cut(s) 835
BssSI CACGAG 1 cut(s) 200
BssT1I CCWWGG 2 cut(s) 239, 846
Bst2BI CACGAG 1 cut(s) 200
Bst2UI CCWGG 3 cut(s) 189, 466, 909
Bst4CI ACNGT 3 cut(s) 419, 482, 490
Bst6I CTCTTC 1 cut(s) 888
BstACI GRCGYC 1 cut(s) 835
BstAPI GCANNNNNTGC 1 cut(s) 449
BstBAI YACGTR 1 cut(s) 396
BstC8I GCNNGC 3 cut(s) 67, 549, 568
BstDEI CTNAG 4 cut(s) 656, 710, 741, 957
BstDSI CCRYGG 2 cut(s) 239, 846
BstEII GGTNACC 1 cut(s) 660
BstF5I GGATG 3 cut(s) 197, 274, 922
BstH2I RGCGCY 1 cut(s) 838
BstHHI GCGC 1 cut(s) 837
BstKTI GATC 1 cut(s) 1027
BstMAI GTCTC 2 cut(s) 39, 279
BstMBI GATC 1 cut(s) 1024
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstNI CCWGG 3 cut(s) 189, 466, 909
BstNSI RCATGY 1 cut(s) 503
BstPI GGTNACC 1 cut(s) 660
BstSCI CCNGG 3 cut(s) 187, 464, 907
BstSFI CTRYAG 2 cut(s) 642, 978
BstV2I GAAGAC 1 cut(s) 339
Bsu15I ATCGAT 1 cut(s) 509
Bsu36I CCTNAGG 1 cut(s) 656
BsuRI GGCC 3 cut(s) 383, 722, 851
BsuTUI ATCGAT 1 cut(s) 509
BtgI CCRYGG 2 cut(s) 239, 846
BtsCI GGATG 3 cut(s) 197, 274, 922
BtsIMutI CAGTG 1 cut(s) 424
Cac8I GCNNGC 3 cut(s) 67, 549, 568
CciI TCATGA 1 cut(s) 24
CfoI GCGC 1 cut(s) 837
Cfr13I GGNCC 3 cut(s) 154, 382, 905
ClaI ATCGAT 1 cut(s) 509
Csp6I GTAC 1 cut(s) 975
CviAII CATG 6 cut(s) 25, 240, 500, 690, 829, 847
CviQI GTAC 1 cut(s) 975
DdeI CTNAG 4 cut(s) 656, 710, 741, 957
DinI GGCGCC 1 cut(s) 836
DpnI GATC 1 cut(s) 1026
DpnII GATC 1 cut(s) 1024
DraI TTTAAA 1 cut(s) 807
EaeI YGGCCR 2 cut(s) 720, 849
Eam1104I CTCTTC 1 cut(s) 888
EarI CTCTTC 1 cut(s) 888
EciI GGCGGA 1 cut(s) 57
Eco130I CCWWGG 2 cut(s) 239, 846
Eco31I GGTCTC 1 cut(s) 39
Eco47I GGWCC 2 cut(s) 154, 905
Eco72I CACGTG 1 cut(s) 396
Eco81I CCTNAGG 1 cut(s) 656
Eco88I CYCGRG 1 cut(s) 1050
Eco91I GGTNACC 1 cut(s) 660
EcoO65I GGTNACC 1 cut(s) 660
EcoRI GAATTC 2 cut(s) 182, 428
EcoRII CCWGG 3 cut(s) 187, 464, 907
EcoT14I CCWWGG 2 cut(s) 239, 846
EgeI GGCGCC 1 cut(s) 836
EheI GGCGCC 1 cut(s) 836
ErhI CCWWGG 2 cut(s) 239, 846
FaeI CATG 6 cut(s) 28, 243, 503, 693, 832, 850
FalI AAGNNNNNCTT 4 cut(s) 324, 356, 432, 464
FatI CATG 6 cut(s) 24, 239, 499, 689, 828, 846
FauI CCCGC 1 cut(s) 74
FauNDI CATATG 1 cut(s) 941
FbaI TGATCA 1 cut(s) 1024
FokI GGATG 3 cut(s) 204, 281, 929
FspBI CTAG 2 cut(s) 528, 1008
GlaI GCGC 1 cut(s) 836
HaeII RGCGCY 1 cut(s) 838
HaeIII GGCC 3 cut(s) 383, 722, 851
HapII CCGG 1 cut(s) 816
HhaI GCGC 1 cut(s) 837
Hin1I GRCGYC 1 cut(s) 835
Hin1II CATG 6 cut(s) 28, 243, 503, 693, 832, 850
Hin6I GCGC 1 cut(s) 835
HinP1I GCGC 1 cut(s) 835
HinfI GANTC 2 cut(s) 125, 287
HpaII CCGG 1 cut(s) 816
HphI GGTGA 3 cut(s) 24, 257, 654
Hpy166II GTNNAC 2 cut(s) 590, 620
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 3 cut(s) 25, 403, 1028
Hpy8I GTNNAC 2 cut(s) 590, 620
HpyAV CCTTC 5 cut(s) 99, 139, 238, 373, 1001
HpyCH4III ACNGT 3 cut(s) 419, 482, 490
HpyCH4IV ACGT 1 cut(s) 395
HpyCH4V TGCA 5 cut(s) 515, 551, 602, 670, 980
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 4 cut(s) 656, 710, 741, 957
HpySE526I ACGT 1 cut(s) 395
Hsp92I GRCGYC 1 cut(s) 835
Hsp92II CATG 6 cut(s) 28, 243, 503, 693, 832, 850
HspAI GCGC 1 cut(s) 835
KasI GGCGCC 1 cut(s) 834
Ksp22I TGATCA 1 cut(s) 1024
Kzo9I GATC 1 cut(s) 1024
LmnI GCTCC 1 cut(s) 123
MaeI CTAG 2 cut(s) 528, 1008
MaeII ACGT 1 cut(s) 395
MaeIII GTNAC 1 cut(s) 660
MalI GATC 1 cut(s) 1026
MboI GATC 1 cut(s) 1024
MboII GAAGA 3 cut(s) 344, 381, 905
MfeI CAATTG 1 cut(s) 603
MhlI GDGCHC 2 cut(s) 215, 438
MlsI TGGCCA 2 cut(s) 722, 851
MluNI TGGCCA 2 cut(s) 722, 851
Mly113I GGCGCC 1 cut(s) 835
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 2 cut(s) 146, 684
Mox20I TGGCCA 2 cut(s) 722, 851
MroXI GAANNNNTTC 2 cut(s) 108, 444
MscI TGGCCA 2 cut(s) 722, 851
MseI TTAA 5 cut(s) 6, 614, 779, 806, 962
Msp20I TGGCCA 2 cut(s) 722, 851
MspI CCGG 1 cut(s) 816
MspR9I CCNGG 3 cut(s) 189, 466, 909
MunI CAATTG 1 cut(s) 603
MvaI CCWGG 3 cut(s) 189, 466, 909
MwoI GCNNNNNNNGC 1 cut(s) 449
NarI GGCGCC 1 cut(s) 835
NcoI CCATGG 2 cut(s) 239, 846
NdeI CATATG 1 cut(s) 941
NdeII GATC 1 cut(s) 1024
NlaIII CATG 6 cut(s) 28, 243, 503, 693, 832, 850
NlaIV GGNNCC 2 cut(s) 156, 836
NmuCI GTSAC 1 cut(s) 660
NspI RCATGY 1 cut(s) 503
PaeR7I CTCGAG 1 cut(s) 1050
PagI TCATGA 1 cut(s) 24
PdmI GAANNNNTTC 2 cut(s) 108, 444
PfeI GAWTC 1 cut(s) 125
PleI GAGTC 1 cut(s) 281
PluTI GGCGCC 1 cut(s) 838
PmaCI CACGTG 1 cut(s) 396
PmlI CACGTG 1 cut(s) 396
PpsI GAGTC 1 cut(s) 281
Ppu21I YACGTR 1 cut(s) 396
PsiI TTATAA 1 cut(s) 576
Psp6I CCWGG 3 cut(s) 187, 464, 907
PspCI CACGTG 1 cut(s) 396
PspEI GGTNACC 1 cut(s) 660
PspGI CCWGG 3 cut(s) 187, 464, 907
PspN4I GGNNCC 2 cut(s) 156, 836
PspPI GGNCC 3 cut(s) 154, 382, 905
PspXI VCTCGAGB 1 cut(s) 1050
PstI CTGCAG 1 cut(s) 982
RsaI GTAC 1 cut(s) 976
RsaNI GTAC 1 cut(s) 975
SaqAI TTAA 5 cut(s) 6, 614, 779, 806, 962
Sau3AI GATC 1 cut(s) 1024
Sau96I GGNCC 3 cut(s) 154, 382, 905
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 3 cut(s) 189, 466, 909
SduI GDGCHC 2 cut(s) 215, 438
SfcI CTRYAG 2 cut(s) 642, 978
SfoI GGCGCC 1 cut(s) 836
Sfr274I CTCGAG 1 cut(s) 1050
SinI GGWCC 2 cut(s) 154, 905
SlaI CTCGAG 1 cut(s) 1050
SmlI CTYRAG 4 cut(s) 113, 341, 946, 1050
SmoI CTYRAG 4 cut(s) 113, 341, 946, 1050
SsiI CCGC 3 cut(s) 42, 67, 995
SspDI GGCGCC 1 cut(s) 834
SspMI CTAG 2 cut(s) 528, 1008
StyD4I CCNGG 3 cut(s) 187, 464, 907
StyI CCWWGG 2 cut(s) 239, 846
TaaI ACNGT 3 cut(s) 419, 482, 490
TaiI ACGT 1 cut(s) 398
TaqI TCGA 5 cut(s) 432, 484, 509, 757, 1051
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 5 cut(s) 6, 614, 779, 806, 962
Tru9I TTAA 5 cut(s) 6, 614, 779, 806, 962
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 660
Tsp45I GTSAC 1 cut(s) 660
TspDTI ATGAA 4 cut(s) 117, 220, 400, 817
TspRI CASTG 1 cut(s) 424
VpaK11BI GGWCC 2 cut(s) 154, 905
XapI RAATTY 5 cut(s) 169, 182, 428, 540, 865
XceI RCATGY 1 cut(s) 503
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XhoI CTCGAG 1 cut(s) 1050
XmnI GAANNNNTTC 2 cut(s) 108, 444
XspI CTAG 2 cut(s) 528, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.