RLG00000033850

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000264
Physical Location & Seq
Reverse (-)
32974117 .. 32975200
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033850

Sequence Viewer

Length: 522 bp
ATGGCGAAGAGAGTAGAAACGTCACATTCTCATCGCATATACGAAGCACGAGAAGAGAAACTCGTGTCTTCAAAAGACGGGAAGCAATTCAGAAGAGTCGCAAGGTTTCTCAAGCCCTGTGCTCCGAATTCGAGCAAAGCAGTGGGACCCTCAAATACTCCATTGTTCCAAAGATCAAAACCAAAGTCTCTTCAGAGTCTCGCCTTCCTCGTTAAGCAACCAAATGGCGGACTTCAAGAGGTCATGGTGGACGTAGCCGCCGTCGAACATCTGCATTCCGAGCTTGTTATCCAGCAGCAACTTGTAGTCGCTCTCCTTCACCAGATTGAGCCCCCAGATGGCAAGGACTATGTCGCGGTGGTCGTGGTAGACGTAGATGAGGTAGGGCGGCGCGTGGCCGCAGGTCTGCTCGTAGGTGACGCGCTTGACGACGCCGTCCAGGTTGAGACGACGGTGAAAATGGGTTGTGGCCTGAGTCGAGCATCTCTGCCGGTGAGATTGGTGATTGGGTGCCCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

174

Amino Acids

18.82

Weight (kDa)

9.07

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 434
Acc36I ACCTGC 1 cut(s) 392
AccB1I GGYRCC 1 cut(s) 510
AccI GTMKAC 1 cut(s) 369
AccII CGCG 3 cut(s) 356, 393, 422
AciI CCGC 5 cut(s) 228, 258, 356, 388, 399
AcoI YGGCCR 1 cut(s) 396
AcsI RAATTY 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 432
AfiI CCNNNNNNNGG 2 cut(s) 227, 338
AgsI TTSAA 2 cut(s) 72, 236
AjnI CCWGG 1 cut(s) 438
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 3 cut(s) 192, 203, 440
AoxI GGCC 2 cut(s) 396, 469
ApeKI GCWGC 1 cut(s) 295
ApoI RAATTY 1 cut(s) 127
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
Asp700I GAANNNNTTC 1 cut(s) 86
AspLEI GCGC 2 cut(s) 393, 424
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 5 cut(s) 311, 428, 466, 505, 514
AvaII GGWCC 1 cut(s) 146
BaeGI GKGCMC 1 cut(s) 515
BanI GGYRCC 1 cut(s) 510
BanII GRGCYC 1 cut(s) 333
BauI CACGAG 2 cut(s) 48, 62
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 307
BccI CCATC 1 cut(s) 332
BceAI ACGGC 2 cut(s) 245, 419
BciT130I CCWGG 1 cut(s) 440
BcoDI GTCTC 3 cut(s) 192, 203, 440
BfuAI ACCTGC 1 cut(s) 392
BisI GCNGC 4 cut(s) 258, 296, 389, 399
BlsI GCNGC 4 cut(s) 259, 297, 390, 400
Bme1390I CCNGG 1 cut(s) 440
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 3 cut(s) 147, 148, 512
BmrFI CCNGG 1 cut(s) 440
BmsI GCATC 1 cut(s) 491
BpiI GAAGAC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 95
BsaHI GRCGYC 1 cut(s) 432
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 338
Bse118I RCCGGY 1 cut(s) 490
BseBI CCWGG 1 cut(s) 440
BseLI CCNNNNNNNGG 2 cut(s) 227, 338
BseMII CTCAG 1 cut(s) 464
BseSI GKGCMC 1 cut(s) 515
BseXI GCAGC 1 cut(s) 307
Bsh1236I CGCG 3 cut(s) 356, 393, 422
BshFI GGCC 2 cut(s) 398, 471
BshNI GGYRCC 1 cut(s) 510
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 491
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 227, 338
BsmAI GTCTC 3 cut(s) 192, 203, 440
BsmBI CGTCTC 1 cut(s) 440
BsmFI GGGAC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 2 cut(s) 398, 471
Bsp1286I GDGCHC 3 cut(s) 124, 333, 515
Bsp143I GATC 1 cut(s) 173
BspACI CCGC 5 cut(s) 228, 258, 356, 388, 399
BspANI GGCC 2 cut(s) 398, 471
BspCNI CTCAG 1 cut(s) 465
BspFNI CGCG 3 cut(s) 356, 393, 422
BspLI GGNNCC 3 cut(s) 147, 148, 512
BspMI ACCTGC 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 510
BsrFI RCCGGY 1 cut(s) 490
BssAI RCCGGY 1 cut(s) 490
BssMI GATC 1 cut(s) 173
BssNI GRCGYC 1 cut(s) 432
BssSI CACGAG 2 cut(s) 48, 62
Bst2BI CACGAG 2 cut(s) 48, 62
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 1 cut(s) 454
Bst6I CTCTTC 4 cut(s) 2, 48, 88, 195
BstACI GRCGYC 1 cut(s) 432
BstDEI CTNAG 1 cut(s) 473
BstFNI CGCG 3 cut(s) 356, 393, 422
BstHHI GCGC 2 cut(s) 393, 424
BstKTI GATC 1 cut(s) 176
BstMAI GTCTC 3 cut(s) 192, 203, 440
BstMBI GATC 1 cut(s) 173
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstNI CCWGG 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 515
BstUI CGCG 3 cut(s) 356, 393, 422
BstV1I GCAGC 1 cut(s) 307
BstV2I GAAGAC 1 cut(s) 60
BsuRI GGCC 2 cut(s) 398, 471
BtgZI GCGATG 1 cut(s) 17
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
BveI ACCTGC 1 cut(s) 392
CfoI GCGC 2 cut(s) 393, 424
Cfr10I RCCGGY 1 cut(s) 490
Cfr13I GGNCC 1 cut(s) 146
CseI GACGC 2 cut(s) 428, 440
CviAII CATG 1 cut(s) 244
CviJI RGCY 6 cut(s) 115, 257, 283, 331, 398, 471
CviKI_1 RGCY 6 cut(s) 115, 257, 283, 331, 398, 471
DdeI CTNAG 1 cut(s) 473
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
DrdI GACNNNNNNGTC 1 cut(s) 434
DseDI GACNNNNNNGTC 1 cut(s) 434
EaeI YGGCCR 1 cut(s) 396
Eam1104I CTCTTC 4 cut(s) 2, 48, 88, 195
EarI CTCTTC 4 cut(s) 2, 48, 88, 195
EciI GGCGGA 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 333
Esp3I CGTCTC 1 cut(s) 440
FaeI CATG 1 cut(s) 247
FaiI YATR 4 cut(s) 38, 40, 245, 351
FaqI GGGAC 1 cut(s) 159
FatI CATG 1 cut(s) 243
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 4 cut(s) 258, 296, 389, 399
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 4 cut(s) 258, 296, 389, 399
GlaI GCGC 2 cut(s) 392, 423
GluI GCNGC 4 cut(s) 258, 296, 389, 399
HaeIII GGCC 2 cut(s) 398, 471
HapII CCGG 1 cut(s) 491
HgaI GACGC 2 cut(s) 428, 440
HhaI GCGC 2 cut(s) 393, 424
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 1 cut(s) 247
Hin6I GCGC 2 cut(s) 391, 422
HinP1I GCGC 2 cut(s) 391, 422
HinfI GANTC 3 cut(s) 96, 196, 475
HpaII CCGG 1 cut(s) 491
HphI GGTGA 5 cut(s) 311, 428, 466, 505, 514
Hpy166II GTNNAC 2 cut(s) 250, 370
Hpy188I TCNGA 4 cut(s) 92, 126, 195, 280
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 2 cut(s) 250, 370
Hpy99I CGWCG 3 cut(s) 266, 434, 454
HpyAV CCTTC 2 cut(s) 214, 326
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4IV ACGT 3 cut(s) 20, 252, 372
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpyF3I CTNAG 1 cut(s) 473
HpySE526I ACGT 3 cut(s) 20, 252, 372
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 1 cut(s) 247
HspAI GCGC 2 cut(s) 391, 422
KflI GGGWCCC 1 cut(s) 146
Kzo9I GATC 1 cut(s) 173
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 9 cut(s) 130, 305, 335, 348, 387, 425, 452, 485, 504
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 1 cut(s) 491
MaeII ACGT 3 cut(s) 20, 252, 372
MaeIII GTNAC 2 cut(s) 21, 416
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MboII GAAGA 5 cut(s) 19, 60, 65, 105, 182
MhlI GDGCHC 3 cut(s) 124, 333, 515
MluCI AATT 2 cut(s) 86, 127
MlyI GAGTC 3 cut(s) 105, 205, 484
MnlI CCTC 4 cut(s) 160, 218, 232, 373
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 1 cut(s) 213
MspI CCGG 1 cut(s) 491
MspR9I CCNGG 1 cut(s) 440
Mva1269I GAATGC 1 cut(s) 274
MvaI CCWGG 1 cut(s) 440
MvnI CGCG 3 cut(s) 356, 393, 422
MwoI GCNNNNNNNGC 1 cut(s) 280
NdeII GATC 1 cut(s) 173
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 3 cut(s) 147, 148, 512
NmuCI GTSAC 2 cut(s) 21, 416
PcsI WCGNNNNNNNCGW 5 cut(s) 207, 258, 360, 369, 426
PctI GAATGC 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 86
PflFI GACNNNGTC 2 cut(s) 350, 434
PkrI GCNGC 4 cut(s) 259, 297, 390, 400
PleI GAGTC 3 cut(s) 104, 204, 483
PpsI GAGTC 3 cut(s) 104, 204, 483
PpuMI RGGWCCY 1 cut(s) 146
Psp5II RGGWCCY 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 438
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 3 cut(s) 147, 148, 512
PspPI GGNCC 1 cut(s) 146
PspPPI RGGWCCY 1 cut(s) 146
PsyI GACNNNGTC 2 cut(s) 350, 434
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 4 cut(s) 258, 296, 389, 399
Sau3AI GATC 1 cut(s) 173
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 3 cut(s) 105, 205, 484
ScrFI CCNGG 1 cut(s) 440
SduI GDGCHC 3 cut(s) 124, 333, 515
SfaNI GCATC 1 cut(s) 491
SinI GGWCC 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 2 cut(s) 86, 127
SsiI CCGC 5 cut(s) 228, 258, 356, 388, 399
StyD4I CCNGG 1 cut(s) 438
TaaI ACNGT 1 cut(s) 454
TaiI ACGT 3 cut(s) 23, 255, 375
TaqI TCGA 3 cut(s) 131, 264, 478
TasI AATT 2 cut(s) 86, 127
TauI GCSGC 3 cut(s) 260, 391, 401
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 2 cut(s) 21, 416
TseI GCWGC 1 cut(s) 295
Tsp45I GTSAC 2 cut(s) 21, 416
TspRI CASTG 1 cut(s) 147
Tth111I GACNNNGTC 2 cut(s) 350, 434
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.