RLG00000020213

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000264
Physical Location & Seq
Forward (+)
62506218 .. 62506725
508 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020213

Sequence Viewer

Length: 411 bp
ATGAGCAAGACCTGCCCACGTCGTCGGAAGTCCGGTGGTGGACTAGTGGTTGTCGTCGAAACACAGGCAGAAGCACAGCAACTCTCACCGGAAGATTCCGATTTCGAGGTCATGGTGGACGTAGCCGCCGTCGAACATCTGCATTCCGAGCTTGTTATCCAGCAGCAACTTGTAGTCGCTCTCCTTCACCAGATTAAGCCCCTGGATGGCGAGGACAATGTCGCGGTGGTCGTGGTCGACGTAGATGAGGTAGGGTGCCGCGTGGCCGCAGGTCTGCTCATAGGTGACGCGCTTGACGACGCCGTTTGGGTTGAGACGACAATGAAAATGGGTTGTGGCCTGAGTCTAGCATCTTTGCCGGTGAGATTGGTGATTGGGTGCCCAGAGCTTTTCTTTGGGTGCCCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.55

Weight (kDa)

4.53

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 20, 260
AccB1I GGYRCC 3 cut(s) 255, 378, 399
AccI GTMKAC 1 cut(s) 237
AccII CGCG 3 cut(s) 224, 261, 290
AciI CCGC 4 cut(s) 126, 224, 259, 267
AcoI YGGCCR 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 300
AfiI CCNNNNNNNGG 1 cut(s) 206
AhlI ACTAGT 1 cut(s) 43
AjiI CACGTC 1 cut(s) 20
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 2 cut(s) 151, 388
AluI AGCT 2 cut(s) 151, 388
Alw26I GTCTC 1 cut(s) 308
AoxI GGCC 2 cut(s) 264, 337
ApeKI GCWGC 1 cut(s) 163
AspLEI GCGC 1 cut(s) 292
AsuHPI GGTGA 5 cut(s) 78, 179, 296, 373, 382
BaeGI GKGCMC 2 cut(s) 383, 404
BanI GGYRCC 3 cut(s) 255, 378, 399
BbvI GCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 200
BceAI ACGGC 2 cut(s) 113, 287
BciT130I CCWGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 308
BcuI ACTAGT 1 cut(s) 43
BfaI CTAG 2 cut(s) 44, 347
BfuAI ACCTGC 2 cut(s) 20, 260
BisI GCNGC 4 cut(s) 126, 164, 259, 267
BlsI GCNGC 4 cut(s) 127, 165, 260, 268
Bme1390I CCNGG 1 cut(s) 203
BmgBI CACGTC 1 cut(s) 20
BmiI GGNNCC 3 cut(s) 257, 380, 401
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 2 cut(s) 32, 88
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse118I RCCGGY 1 cut(s) 358
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 332
BseSI GKGCMC 2 cut(s) 383, 404
BseXI GCAGC 1 cut(s) 175
Bsh1236I CGCG 3 cut(s) 224, 261, 290
BshFI GGCC 2 cut(s) 266, 339
BshNI GGYRCC 3 cut(s) 255, 378, 399
BsiSI CCGG 3 cut(s) 33, 89, 359
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 308
BsmBI CGTCTC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 142
BsnI GGCC 2 cut(s) 266, 339
Bsp1286I GDGCHC 2 cut(s) 383, 404
BspACI CCGC 4 cut(s) 126, 224, 259, 267
BspANI GGCC 2 cut(s) 266, 339
BspCNI CTCAG 1 cut(s) 333
BspFNI CGCG 3 cut(s) 224, 261, 290
BspLI GGNNCC 3 cut(s) 257, 380, 401
BspMI ACCTGC 2 cut(s) 20, 260
BspT107I GGYRCC 3 cut(s) 255, 378, 399
BsrFI RCCGGY 1 cut(s) 358
BssAI RCCGGY 1 cut(s) 358
BssECI CCNNGG 1 cut(s) 201
BssNI GRCGYC 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 203
BstACI GRCGYC 1 cut(s) 300
BstAPI GCANNNNNTGC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 341
BstF5I GGATG 1 cut(s) 211
BstFNI CGCG 3 cut(s) 224, 261, 290
BstHHI GCGC 1 cut(s) 292
BstMAI GTCTC 1 cut(s) 308
BstMWI GCNNNNNNNGC 2 cut(s) 12, 148
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstSLI GKGCMC 2 cut(s) 383, 404
BstUI CGCG 3 cut(s) 224, 261, 290
BstV1I GCAGC 1 cut(s) 175
BsuRI GGCC 2 cut(s) 266, 339
BtrI CACGTC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 211
BveI ACCTGC 2 cut(s) 20, 260
CfoI GCGC 1 cut(s) 292
Cfr10I RCCGGY 1 cut(s) 358
CseI GACGC 2 cut(s) 296, 308
CviAII CATG 1 cut(s) 112
CviJI RGCY 6 cut(s) 125, 151, 199, 266, 339, 388
CviKI_1 RGCY 6 cut(s) 125, 151, 199, 266, 339, 388
DdeI CTNAG 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 1 cut(s) 115
FaiI YATR 2 cut(s) 113, 281
FatI CATG 1 cut(s) 111
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 4 cut(s) 126, 164, 259, 267
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 4 cut(s) 126, 164, 259, 267
FspBI CTAG 2 cut(s) 44, 347
GlaI GCGC 1 cut(s) 291
GluI GCNGC 4 cut(s) 126, 164, 259, 267
HaeIII GGCC 2 cut(s) 266, 339
HapII CCGG 3 cut(s) 33, 89, 359
HgaI GACGC 2 cut(s) 296, 308
HhaI GCGC 1 cut(s) 292
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 1 cut(s) 115
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 2 cut(s) 95, 343
HpaII CCGG 3 cut(s) 33, 89, 359
HphI GGTGA 5 cut(s) 78, 179, 296, 373, 382
Hpy166II GTNNAC 3 cut(s) 41, 118, 238
Hpy188I TCNGA 3 cut(s) 27, 100, 148
Hpy8I GTNNAC 3 cut(s) 41, 118, 238
Hpy99I CGWCG 6 cut(s) 24, 27, 59, 134, 242, 302
HpyAV CCTTC 1 cut(s) 194
HpyCH4IV ACGT 3 cut(s) 19, 120, 240
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 148
HpyF3I CTNAG 1 cut(s) 341
HpySE526I ACGT 3 cut(s) 19, 120, 240
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 1 cut(s) 115
HspAI GCGC 1 cut(s) 290
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 359
MaeI CTAG 2 cut(s) 44, 347
MaeII ACGT 3 cut(s) 19, 120, 240
MaeIII GTNAC 1 cut(s) 284
MboII GAAGA 1 cut(s) 104
MhlI GDGCHC 2 cut(s) 383, 404
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 1 cut(s) 5
MnlI CCTC 3 cut(s) 100, 205, 241
MseI TTAA 1 cut(s) 195
MspI CCGG 3 cut(s) 33, 89, 359
MspR9I CCNGG 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 142
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 3 cut(s) 224, 261, 290
MwoI GCNNNNNNNGC 2 cut(s) 12, 148
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 3 cut(s) 257, 380, 401
NmuCI GTSAC 1 cut(s) 284
PcsI WCGNNNNNNNCGW 4 cut(s) 126, 228, 237, 294
PctI GAATGC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 95
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 4 cut(s) 127, 165, 260, 268
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 3 cut(s) 257, 380, 401
PsyI GACNNNGTC 1 cut(s) 218
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 4 cut(s) 126, 164, 259, 267
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 2 cut(s) 383, 404
SfaNI GCATC 1 cut(s) 359
SpeI ACTAGT 1 cut(s) 43
SsiI CCGC 4 cut(s) 126, 224, 259, 267
SspMI CTAG 2 cut(s) 44, 347
StyD4I CCNGG 1 cut(s) 201
TaiI ACGT 3 cut(s) 22, 123, 243
TaqI TCGA 4 cut(s) 57, 105, 132, 237
TauI GCSGC 3 cut(s) 128, 261, 269
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 1 cut(s) 338
Tth111I GACNNNGTC 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 2 cut(s) 44, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.