RLG00000033875

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000264
Physical Location & Seq
Forward (+)
33614975 .. 33616770
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033875

Sequence Viewer

Length: 441 bp
ATGCAATTTGGTTTCGATCAAGACATTCCATGCATTGTGGCTCGATCCAATCAAAGTTCTGATATAGCCTGGAATCATTACATCAAGGAAATTCAGAATGCAAGGTTGTATGTTCCATCCACGCTTTCAAAGGCAGATATTAGCACAAGATACTTGAAGTGGTGGAAGGAATCAGTGTCGGGTCTCAAAAAGTCCATCATGTCAAAATTAGAAAATTCAAAATGCATGGGAGGATCCCTACCTAGGGCTAAACCTGCCCCTGTAGATCCTGGTTCTGCCCCAGAGAAAGCTGTAGAGGGTTCTAAGAAACGGAAGAAGAATAATGATTTCACTCTTCCTTCTGTTTCTGTTCCTAAGTACTCAGATGAAGCAAACGAAACAAAGCATCCTCTAATTTGGGAAATGGAAGGGAGAGTCAAACTCTGTCAAATCAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

147

Amino Acids

16.48

Weight (kDa)

9.47

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 1 - 56 5.6e-10 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 262
AclWI GGATC 4 cut(s) 39, 228, 241, 260
AcsI RAATTY 2 cut(s) 90, 214
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 2 cut(s) 243, 244
AgsI TTSAA 3 cut(s) 129, 157, 219
AjnI CCWGG 2 cut(s) 68, 268
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 4 cut(s) 39, 228, 241, 260
ApoI RAATTY 2 cut(s) 90, 214
AspA2I CCTAGG 1 cut(s) 242
AvrII CCTAGG 1 cut(s) 242
BamHI GGATCC 1 cut(s) 233
BccI CCATC 2 cut(s) 124, 203
BciT130I CCWGG 2 cut(s) 70, 270
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 2 cut(s) 243, 439
BfmI CTRYAG 2 cut(s) 261, 291
BfuAI ACCTGC 1 cut(s) 262
BlnI CCTAGG 1 cut(s) 242
BmcAI AGTACT 1 cut(s) 359
Bme1390I CCNGG 2 cut(s) 70, 270
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 2 cut(s) 70, 270
BmsI GCATC 1 cut(s) 394
BplI GAGNNNNNCTC 2 cut(s) 405, 437
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 242
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 244
BseBI CCWGG 2 cut(s) 70, 270
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 2 cut(s) 116, 385
BseLI CCNNNNNNNGG 2 cut(s) 243, 244
BseMII CTCAG 1 cut(s) 375
BslI CCNNNNNNNGG 2 cut(s) 243, 244
BsmAI GTCTC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 103
Bso31I GGTCTC 1 cut(s) 188
Bsp143I GATC 4 cut(s) 16, 44, 233, 265
BspCNI CTCAG 1 cut(s) 374
BspLI GGNNCC 1 cut(s) 235
BspMI ACCTGC 1 cut(s) 262
BspPI GGATC 4 cut(s) 39, 228, 241, 260
BspTNI GGTCTC 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 4 cut(s) 16, 44, 233, 265
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 70, 270
Bst6I CTCTTC 1 cut(s) 339
BstDEI CTNAG 3 cut(s) 303, 354, 361
BstF5I GGATG 2 cut(s) 116, 385
BstKTI GATC 4 cut(s) 19, 47, 236, 268
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 4 cut(s) 16, 44, 233, 265
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 2 cut(s) 70, 270
BstSCI CCNGG 2 cut(s) 68, 268
BstSFI CTRYAG 2 cut(s) 261, 291
BstX2I RGATCY 2 cut(s) 233, 265
BstYI RGATCY 2 cut(s) 233, 265
BtsCI GGATG 2 cut(s) 116, 385
BtsIMutI CAGTG 1 cut(s) 180
BveI ACCTGC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 358
CviAII CATG 3 cut(s) 30, 199, 226
CviJI RGCY 4 cut(s) 41, 68, 248, 290
CviKI_1 RGCY 4 cut(s) 41, 68, 248, 290
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 3 cut(s) 303, 354, 361
DpnI GATC 4 cut(s) 18, 46, 235, 267
DpnII GATC 4 cut(s) 16, 44, 233, 265
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 242
Eco31I GGTCTC 1 cut(s) 188
EcoRII CCWGG 2 cut(s) 68, 268
EcoT14I CCWWGG 1 cut(s) 242
EcoT22I ATGCAT 2 cut(s) 35, 227
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 3 cut(s) 33, 202, 229
FaiI YATR 5 cut(s) 31, 65, 111, 200, 227
FatI CATG 3 cut(s) 29, 198, 225
FokI GGATG 2 cut(s) 103, 372
FspBI CTAG 2 cut(s) 243, 439
Hin1II CATG 3 cut(s) 33, 202, 229
HinfI GANTC 3 cut(s) 73, 170, 414
Hpy188I TCNGA 3 cut(s) 61, 96, 364
Hpy188III TCNNGA 2 cut(s) 20, 433
HpyAV CCTTC 3 cut(s) 160, 348, 401
HpyCH4V TGCA 4 cut(s) 4, 33, 101, 225
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 3 cut(s) 303, 354, 361
Hsp92II CATG 3 cut(s) 33, 202, 229
Kzo9I GATC 4 cut(s) 16, 44, 233, 265
LpnPI CCDG 8 cut(s) 55, 82, 255, 267, 273, 282, 294, 418
LweI GCATC 1 cut(s) 394
MaeI CTAG 2 cut(s) 243, 439
MalI GATC 4 cut(s) 18, 46, 235, 267
MboI GATC 4 cut(s) 16, 44, 233, 265
MboII GAAGA 3 cut(s) 325, 326, 328
MflI RGATCY 2 cut(s) 233, 265
MluCI AATT 5 cut(s) 5, 90, 206, 214, 393
MlyI GAGTC 1 cut(s) 423
MnlI CCTC 3 cut(s) 224, 289, 399
Mph1103I ATGCAT 2 cut(s) 35, 227
MspR9I CCNGG 2 cut(s) 70, 270
Mva1269I GAATGC 1 cut(s) 103
MvaI CCWGG 2 cut(s) 70, 270
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 4 cut(s) 16, 44, 233, 265
NlaIII CATG 3 cut(s) 33, 202, 229
NlaIV GGNNCC 1 cut(s) 235
NsiI ATGCAT 2 cut(s) 35, 227
PctI GAATGC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 73, 170
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
Psp6I CCWGG 2 cut(s) 68, 268
PspGI CCWGG 2 cut(s) 68, 268
PspN4I GGNNCC 1 cut(s) 235
PsuI RGATCY 2 cut(s) 233, 265
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
Sau3AI GATC 4 cut(s) 16, 44, 233, 265
ScaI AGTACT 1 cut(s) 359
SchI GAGTC 1 cut(s) 423
ScrFI CCNGG 2 cut(s) 70, 270
SetI ASST 4 cut(s) 107, 244, 256, 292
SfaNI GCATC 1 cut(s) 394
SfcI CTRYAG 2 cut(s) 261, 291
Sse9I AATT 5 cut(s) 5, 90, 206, 214, 393
SspMI CTAG 2 cut(s) 243, 439
StyD4I CCNGG 2 cut(s) 68, 268
StyI CCWWGG 1 cut(s) 242
TaqI TCGA 2 cut(s) 15, 43
TasI AATT 5 cut(s) 5, 90, 206, 214, 393
TatI WGTACW 1 cut(s) 357
TfiI GAWTC 2 cut(s) 73, 170
TscAI CASTG 1 cut(s) 180
TspDTI ATGAA 1 cut(s) 381
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 1 cut(s) 180
XapI RAATTY 2 cut(s) 90, 214
XmaJI CCTAGG 1 cut(s) 242
XspI CTAG 2 cut(s) 243, 439
ZrmI AGTACT 1 cut(s) 359
Zsp2I ATGCAT 2 cut(s) 35, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.