Rroxscaffold_1G00042580

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000264
Physical Location & Seq
Reverse (-)
60887673 .. 60890377
2705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042580.1

Sequence Viewer

Length: 2220 bp
ATGCCTATTTTCTCAAACCCATTCTCCCTGATTCCTCCAATTATGAACCTCCTTTCAATCTCCCTCACTGTCTTTCCTCTCTTGCACCCCGTTTTGACCCAAAAAAAGCTAGAGCTTCAATTCCTAGGATGGCGTTCCCACAACCAAGATTTGCAGAGTTGGTTTCTCCACCTGGCTTCTAAGCACCAATCTACATGGAAGAAAGCTGGTGTCTTTGAAGCCATCTTCAATTCCACGTACCAAATCAAAAGAAAAAAGGATTTGGTTTGTGGGTTTGCAGAGAAATGGTGTTGTGAGACCAACACCTTCATCTTTCCATGGGGTGAAGCAACTATCACATTGGAGGATGTTATGGTTTTGGGAGGCTTTTCTGTTTTGGGAGACTCCATTTTAAGTCCTATTGAAAGCAGAGAACTGAAAGAAATAGAAGACAAACTTGAGGTAGAGCGACTGGGACTTTACAACAAACAGGCTGGAAGAGTTCCTGTTGCTAACACATACATATGGACGAAGAAGTTCATGAAGAGTGGGAGCGAATTAGAGCACGAAGCATTCCTTGTGTTCTGGCTGTCCAGGTATGTTTTCCATAATTCTCTCAACGCAGTCAATAAGGCTGTTTTCTCCATAGCAATTCGTCTAGCTAGAGGGATTCGAGTTGCGCTTGCACCGGCTATTCTTTCTCACATTTATAGAGATTTGGGTCTACTCAAAAGGACAATTGCATCTTCAGATGAATTAAATGCCAAGAACGCTTTTGTAAAACTCATAATCAAGTCACAGTTTCAATTAGTTCAGATTTGGGCTTGGGAACGATTTCTGGAACTTAGGCCAAAGCCCAAAGTTATATGCTATGGTGAGCCGAGATTGGCTCGATGGGATAAAGTAGACTGTCTGAATGTTGGAGATATGAGGAGGGTTTTAGACACAGCAGGTGAAGGTTTCATGTGGCGCCCTTATGCCATGGCCATTAAGAACTGGAATTTTCCTAAATACTATGTTGAAAAGGAAGAGTGGGTTTTGGTTGGTGCAGGCTTGGATGATGAACTATTGTCATTTGCCATGTGCTTGAGGGTGGCTGAGTTAGTTGGATTTGATACTATACAGCAGTACCTTCCACATAGAGTAGCTCGGCAATTTGGATTTGATCAAGACCTTCCGTGTTCTGTTCCTGAACACAGCCAAAATTATGACAACGCGAAATTGTATATTCCGTCCAGGCTTTCTGAGGCAGATGTTAGCATTAGATACTTAAATTGCTGGAAGGAATCAGTTTCAGGCCTCGAACAGAGACATATGCCATCAAAAAAGAAAGTTAAGAAATCTGTAGACTTGATAAATGATGCCACCATTCCTTGTATTTGTTCTCCAAAGAATTCAGAAGAACTTGTGCAGGTTTCTGCAGGACGGAATGAAGGTGAATATTCTTTTTGTCCTCCAGGATTTTCTCTCAAAAGGAATAGAATGGAAGCTGGAGATCCTATAGACGAAGATGATCTAACTATATCAGAGGCTTTGAAACTTAAGAAGAAGCTTAAAACTGTTGAAACTGGAAAATATACTGACAGTGCGAAGCTGTCAAGTCCCAATCATATCTTTGCATCTTCATCTGCAGATGAAAGTTCTATGAATATTATTAAGTCAAAAATACTGGAAAAAGAAGTTGTGTTGAGTAGTGAAGTGGTGACTTGGGGAAGTAAAGGTCATTGGAAACTGGACAAGGTAGTCATGAGTCAGGAAAGAAGTCTAGGTAATGACATGGTCAGCATCGTTGGCAATAAATGTCCTAGCAGCACCTCTTTATCTGATAAACCGGAATGTGGTAGCAGCATGTCTTTATGTAAGAAACGGGAATGTGCTAGCAGCAGTTCATTATTTGTGAAACAAGAATGTACTAGCAGCGGCTCTTTATTTGTAAAACTGGAATGTGCTAGCATCAGCCCTTCAATTGCAGATGAAGGTACTTTTGTTAATACTAAGACGTCTGAAAGATTGGAGGAAGAGGTTCCATTCATTAAAGCTTTGATCTGGGGAGGTAAGGGTAAGAGGAAAATGAAAAATGTAATGAGAAGTAAGGCAAGAAGCAGCTCCTTATTCAAGAAACGGGAAGATGGCAGCAGCAGCACTTCATTTGAAAAACGAGTTTCAGAGCTTAAAGCTAAGGTTTACAGGCTGGAAAAGGTGGTTCAGGTGTTGAAAGCAAATACTTTTGGGAGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

739

Amino Acids

83.57

Weight (kDa)

9.07

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 70 - 420 2.9e-100 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 920
AasI GACNNNNNNGTC 1 cut(s) 1721
AatII GACGTC 1 cut(s) 1982
Acc36I ACCTGC 2 cut(s) 920, 1381
AccB1I GGYRCC 1 cut(s) 948
AccI GTMKAC 3 cut(s) 703, 885, 1326
AccII CGCG 1 cut(s) 1196
AciI CCGC 1 cut(s) 1899
AclWI GGATC 1 cut(s) 1469
AcoI YGGCCR 1 cut(s) 963
AcsI RAATTY 2 cut(s) 979, 1372
AcuI CTGAAG 1 cut(s) 711
AcyI GRCGYC 2 cut(s) 949, 1979
AfaI GTAC 4 cut(s) 239, 1109, 1891, 1960
AfiI CCNNNNNNNGG 1 cut(s) 1817
AflII CTTAAG 1 cut(s) 1520
AjnI CCWGG 4 cut(s) 171, 572, 1214, 1435
Alw21I GWGCWC 1 cut(s) 546
Alw26I GTCTC 3 cut(s) 290, 375, 1282
AlwI GGATC 1 cut(s) 1469
AoxI GGCC 3 cut(s) 827, 963, 1276
ApeKI GCWGC 8 cut(s) 1788, 1824, 1860, 1896, 2082, 2112, 2115, 2118
ApoI RAATTY 2 cut(s) 979, 1372
Asp700I GAANNNNTTC 3 cut(s) 515, 813, 2001
AspA2I CCTAGG 1 cut(s) 124
AspLEI GCGC 2 cut(s) 661, 951
AsuHPI GGTGA 5 cut(s) 335, 866, 944, 1427, 1693
AsuNHI GCTAGC 2 cut(s) 1856, 1928
AvrII CCTAGG 1 cut(s) 124
BaeI ACNNNNGTAYC 4 cut(s) 1091, 1124, 1950, 1983
BalI TGGCCA 1 cut(s) 965
BanI GGYRCC 1 cut(s) 948
BbsI GAAGAC 1 cut(s) 435
Bbv12I GWGCWC 1 cut(s) 546
BbvI GCAGC 8 cut(s) 1800, 1836, 1872, 1908, 2094, 2124, 2127, 2130
BccI CCATC 5 cut(s) 123, 230, 867, 1306, 2102
BciT130I CCWGG 4 cut(s) 173, 574, 1216, 1437
BclI TGATCA 1 cut(s) 1144
BcoDI GTCTC 3 cut(s) 290, 375, 1282
BfaI CTAG 9 cut(s) 110, 125, 638, 642, 1745, 1785, 1857, 1893, 1929
BfmI CTRYAG 4 cut(s) 1323, 1398, 1479, 1608
BfoI RGCGCY 1 cut(s) 952
BfrI CTTAAG 1 cut(s) 1520
BfuAI ACCTGC 2 cut(s) 920, 1381
BisI GCNGC 9 cut(s) 1789, 1825, 1861, 1897, 1900, 2083, 2113, 2116, 2119
BlnI CCTAGG 1 cut(s) 124
BlsI GCNGC 9 cut(s) 1790, 1826, 1862, 1898, 1901, 2084, 2114, 2117, 2120
Bme1390I CCNGG 4 cut(s) 173, 574, 1216, 1437
BmiI GGNNCC 2 cut(s) 950, 2004
BmrFI CCNGG 4 cut(s) 173, 574, 1216, 1437
BmrI ACTGGG 1 cut(s) 461
BmsI GCATC 5 cut(s) 731, 1330, 1607, 1773, 1941
BmtI GCTAGC 2 cut(s) 1860, 1932
BmuI ACTGGG 1 cut(s) 461
BpiI GAAGAC 1 cut(s) 435
BplI GAGNNNNNCTC 2 cut(s) 853, 885
BpmI CTGGAG 2 cut(s) 1419, 1491
Bpu10I CCTNAGC 1 cut(s) 2157
BpuEI CTTGAG 2 cut(s) 458, 1087
BsaAI YACGTR 1 cut(s) 237
BsaHI GRCGYC 2 cut(s) 949, 1979
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 3 cut(s) 124, 317, 960
BsaWI WCCGGW 1 cut(s) 1810
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 1 cut(s) 1817
Bse118I RCCGGY 1 cut(s) 667
Bse1I ACTGG 6 cut(s) 456, 980, 1552, 1653, 1716, 1923
BseBI CCWGG 4 cut(s) 173, 574, 1216, 1437
BseDI CCNNGG 3 cut(s) 124, 317, 960
BseGI GGATG 3 cut(s) 134, 352, 1042
BseLI CCNNNNNNNGG 1 cut(s) 1817
BseMII CTCAG 2 cut(s) 1068, 1215
BseNI ACTGG 6 cut(s) 456, 980, 1552, 1653, 1716, 1923
BseRI GAGGAG 1 cut(s) 925
BseXI GCAGC 8 cut(s) 1800, 1836, 1872, 1908, 2094, 2124, 2127, 2130
BsgI GTGCAG 2 cut(s) 1047, 1409
Bsh1236I CGCG 1 cut(s) 1196
BshFI GGCC 3 cut(s) 829, 965, 1278
BshNI GGYRCC 1 cut(s) 948
BsiHKAI GWGCWC 1 cut(s) 546
BsiSI CCGG 2 cut(s) 668, 1811
BslFI GGGAC 2 cut(s) 468, 1566
BslI CCNNNNNNNGG 1 cut(s) 1817
BsmAI GTCTC 3 cut(s) 290, 375, 1282
BsmFI GGGAC 2 cut(s) 468, 1566
BsmI GAATGC 1 cut(s) 551
BsnI GGCC 3 cut(s) 829, 965, 1278
Bso31I GGTCTC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 546
Bsp143I GATC 4 cut(s) 1144, 1474, 1492, 2022
Bsp19I CCATGG 2 cut(s) 317, 960
BspACI CCGC 1 cut(s) 1899
BspANI GGCC 3 cut(s) 829, 965, 1278
BspCNI CTCAG 2 cut(s) 1069, 1216
BspFNI CGCG 1 cut(s) 1196
BspHI TCATGA 2 cut(s) 519, 1725
BspLI GGNNCC 2 cut(s) 950, 2004
BspMAI CTGCAG 2 cut(s) 1402, 1612
BspMI ACCTGC 2 cut(s) 920, 1381
BspOI GCTAGC 2 cut(s) 1860, 1932
BspPI GGATC 1 cut(s) 1469
BspT107I GGYRCC 1 cut(s) 948
BspTI CTTAAG 1 cut(s) 1520
BspTNI GGTCTC 1 cut(s) 290
BsrFI RCCGGY 1 cut(s) 667
BsrI ACTGG 6 cut(s) 456, 980, 1552, 1653, 1716, 1923
BssAI RCCGGY 1 cut(s) 667
BssECI CCNNGG 3 cut(s) 124, 317, 960
BssMI GATC 4 cut(s) 1144, 1474, 1492, 2022
BssNI GRCGYC 2 cut(s) 949, 1979
BssT1I CCWWGG 3 cut(s) 124, 317, 960
Bst2UI CCWGG 4 cut(s) 173, 574, 1216, 1437
Bst4CI ACNGT 5 cut(s) 70, 780, 890, 1540, 1565
Bst6I CTCTTC 4 cut(s) 472, 518, 1002, 1992
BstACI GRCGYC 2 cut(s) 949, 1979
BstAFI CTTAAG 1 cut(s) 1520
BstBAI YACGTR 1 cut(s) 237
BstC8I GCNNGC 4 cut(s) 663, 1030, 1858, 1930
BstDEI CTNAG 6 cut(s) 180, 824, 1077, 1224, 1974, 2157
BstDSI CCRYGG 2 cut(s) 317, 960
BstF5I GGATG 3 cut(s) 134, 352, 1042
BstFNI CGCG 1 cut(s) 1196
BstH2I RGCGCY 1 cut(s) 952
BstHHI GCGC 2 cut(s) 661, 951
BstKTI GATC 4 cut(s) 1147, 1477, 1495, 2025
BstMAI GTCTC 3 cut(s) 290, 375, 1282
BstMBI GATC 4 cut(s) 1144, 1474, 1492, 2022
BstMWI GCNNNNNNNGC 3 cut(s) 749, 1770, 2118
BstNI CCWGG 4 cut(s) 173, 574, 1216, 1437
BstNSI RCATGY 1 cut(s) 1831
BstSCI CCNGG 4 cut(s) 171, 572, 1214, 1435
BstSFI CTRYAG 4 cut(s) 1323, 1398, 1479, 1608
BstUI CGCG 1 cut(s) 1196
BstV1I GCAGC 8 cut(s) 1800, 1836, 1872, 1908, 2094, 2124, 2127, 2130
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 1 cut(s) 1474
BstYI RGATCY 1 cut(s) 1474
BsuRI GGCC 3 cut(s) 829, 965, 1278
BtgI CCRYGG 2 cut(s) 317, 960
BtsCI GGATG 3 cut(s) 134, 352, 1042
BtsIMutI CAGTG 2 cut(s) 66, 1570
BveI ACCTGC 2 cut(s) 920, 1381
Cac8I GCNNGC 4 cut(s) 663, 1030, 1858, 1930
CciI TCATGA 2 cut(s) 519, 1725
CfoI GCGC 2 cut(s) 661, 951
Cfr10I RCCGGY 1 cut(s) 667
Csp6I GTAC 4 cut(s) 238, 1108, 1890, 1959
CviAII CATG 9 cut(s) 195, 318, 520, 943, 961, 1060, 1726, 1756, 1828
CviQI GTAC 4 cut(s) 238, 1108, 1890, 1959
DdeI CTNAG 6 cut(s) 180, 824, 1077, 1224, 1974, 2157
DinI GGCGCC 1 cut(s) 950
DpnI GATC 4 cut(s) 1146, 1476, 1494, 2024
DpnII GATC 4 cut(s) 1144, 1474, 1492, 2022
DrdI GACNNNNNNGTC 1 cut(s) 1721
DseDI GACNNNNNNGTC 1 cut(s) 1721
EaeI YGGCCR 1 cut(s) 963
Eam1104I CTCTTC 4 cut(s) 472, 518, 1002, 1992
EarI CTCTTC 4 cut(s) 472, 518, 1002, 1992
Eco130I CCWWGG 3 cut(s) 124, 317, 960
Eco147I AGGCCT 1 cut(s) 1278
Eco31I GGTCTC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 711
EcoRI GAATTC 1 cut(s) 1372
EcoRII CCWGG 4 cut(s) 171, 572, 1214, 1435
EcoT14I CCWWGG 3 cut(s) 124, 317, 960
EgeI GGCGCC 1 cut(s) 950
EheI GGCGCC 1 cut(s) 950
ErhI CCWWGG 3 cut(s) 124, 317, 960
FaeI CATG 9 cut(s) 198, 321, 523, 946, 964, 1063, 1729, 1759, 1831
FalI AAGNNNNNCTT 4 cut(s) 420, 452, 540, 572
FaqI GGGAC 2 cut(s) 468, 1566
FatI CATG 9 cut(s) 194, 317, 519, 942, 960, 1059, 1725, 1755, 1827
FauNDI CATATG 2 cut(s) 503, 1293
FbaI TGATCA 1 cut(s) 1144
FblI GTMKAC 3 cut(s) 703, 885, 1326
Fnu4HI GCNGC 9 cut(s) 1789, 1825, 1861, 1897, 1900, 2083, 2113, 2116, 2119
FokI GGATG 3 cut(s) 141, 359, 1049
Fsp4HI GCNGC 9 cut(s) 1789, 1825, 1861, 1897, 1900, 2083, 2113, 2116, 2119
FspBI CTAG 9 cut(s) 110, 125, 638, 642, 1745, 1785, 1857, 1893, 1929
GlaI GCGC 2 cut(s) 660, 950
GluI GCNGC 9 cut(s) 1789, 1825, 1861, 1897, 1900, 2083, 2113, 2116, 2119
GsuI CTGGAG 2 cut(s) 1419, 1491
HaeII RGCGCY 1 cut(s) 952
HaeIII GGCC 3 cut(s) 829, 965, 1278
HapII CCGG 2 cut(s) 668, 1811
HhaI GCGC 2 cut(s) 661, 951
Hin1I GRCGYC 2 cut(s) 949, 1979
Hin1II CATG 9 cut(s) 198, 321, 523, 946, 964, 1063, 1729, 1759, 1831
Hin6I GCGC 2 cut(s) 659, 949
HinP1I GCGC 2 cut(s) 659, 949
HindIII AAGCTT 2 cut(s) 1529, 2016
HinfI GANTC 5 cut(s) 31, 383, 649, 1265, 1729
HpaII CCGG 2 cut(s) 668, 1811
HphI GGTGA 5 cut(s) 335, 866, 944, 1427, 1693
Hpy166II GTNNAC 4 cut(s) 704, 886, 1327, 2164
Hpy188I TCNGA 9 cut(s) 730, 795, 894, 1225, 1378, 1507, 1804, 1984, 2146
Hpy188III TCNNGA 7 cut(s) 520, 818, 1148, 1169, 1726, 1733, 2095
Hpy8I GTNNAC 4 cut(s) 704, 886, 1327, 2164
HpyAV CCTTC 8 cut(s) 316, 929, 1121, 1163, 1255, 1406, 1949, 1950
HpyCH4III ACNGT 5 cut(s) 70, 780, 890, 1540, 1565
HpyCH4IV ACGT 2 cut(s) 236, 1979
HpyF10VI GCNNNNNNNGC 3 cut(s) 749, 1770, 2118
HpyF3I CTNAG 6 cut(s) 180, 824, 1077, 1224, 1974, 2157
HpySE526I ACGT 2 cut(s) 236, 1979
Hsp92I GRCGYC 2 cut(s) 949, 1979
Hsp92II CATG 9 cut(s) 198, 321, 523, 946, 964, 1063, 1729, 1759, 1831
HspAI GCGC 2 cut(s) 659, 949
KasI GGCGCC 1 cut(s) 948
Ksp22I TGATCA 1 cut(s) 1144
Kzo9I GATC 4 cut(s) 1144, 1474, 1492, 2022
LmnI GCTCC 2 cut(s) 531, 2090
Lsp1109I GCAGC 8 cut(s) 1800, 1836, 1872, 1908, 2094, 2124, 2127, 2130
LweI GCATC 5 cut(s) 731, 1330, 1607, 1773, 1941
MaeI CTAG 9 cut(s) 110, 125, 638, 642, 1745, 1785, 1857, 1893, 1929
MaeII ACGT 2 cut(s) 236, 1979
MaeIII GTNAC 2 cut(s) 774, 1681
MalI GATC 4 cut(s) 1146, 1476, 1494, 2024
MboI GATC 4 cut(s) 1144, 1474, 1492, 2022
MfeI CAATTG 2 cut(s) 717, 1944
MflI RGATCY 1 cut(s) 1474
MhlI GDGCHC 1 cut(s) 546
MlsI TGGCCA 1 cut(s) 965
MluNI TGGCCA 1 cut(s) 965
Mly113I GGCGCC 1 cut(s) 949
MlyI GAGTC 2 cut(s) 377, 1738
MmeI TCCRAC 2 cut(s) 880, 1066
Mox20I TGGCCA 1 cut(s) 965
MroXI GAANNNNTTC 3 cut(s) 515, 813, 2001
MscI TGGCCA 1 cut(s) 965
MslI CAYNNNNRTG 1 cut(s) 502
Msp20I TGGCCA 1 cut(s) 965
MspA1I CMGCKG 1 cut(s) 1899
MspCI CTTAAG 1 cut(s) 1520
MspI CCGG 2 cut(s) 668, 1811
MspR9I CCNGG 4 cut(s) 173, 574, 1216, 1437
MunI CAATTG 2 cut(s) 717, 1944
Mva1269I GAATGC 1 cut(s) 551
MvaI CCWGG 4 cut(s) 173, 574, 1216, 1437
MvnI CGCG 1 cut(s) 1196
MwoI GCNNNNNNNGC 3 cut(s) 749, 1770, 2118
NarI GGCGCC 1 cut(s) 949
NcoI CCATGG 2 cut(s) 317, 960
NdeI CATATG 2 cut(s) 503, 1293
NdeII GATC 4 cut(s) 1144, 1474, 1492, 2022
NheI GCTAGC 2 cut(s) 1856, 1928
NlaIII CATG 9 cut(s) 198, 321, 523, 946, 964, 1063, 1729, 1759, 1831
NlaIV GGNNCC 2 cut(s) 950, 2004
NmeAIII GCCGAG 2 cut(s) 885, 1108
NmuCI GTSAC 2 cut(s) 774, 1681
NspI RCATGY 1 cut(s) 1831
PagI TCATGA 2 cut(s) 519, 1725
PaqCI CACCTGC 1 cut(s) 920
PceI AGGCCT 1 cut(s) 1278
PctI GAATGC 1 cut(s) 551
PdmI GAANNNNTTC 3 cut(s) 515, 813, 2001
PfeI GAWTC 3 cut(s) 31, 649, 1265
PflFI GACNNNGTC 1 cut(s) 1757
PfoI TCCNGGA 1 cut(s) 1435
PkrI GCNGC 9 cut(s) 1790, 1826, 1862, 1898, 1901, 2084, 2114, 2117, 2120
PleI GAGTC 2 cut(s) 377, 1737
PluTI GGCGCC 1 cut(s) 952
PpsI GAGTC 2 cut(s) 377, 1737
Ppu21I YACGTR 1 cut(s) 237
Psp6I CCWGG 4 cut(s) 171, 572, 1214, 1435
PspGI CCWGG 4 cut(s) 171, 572, 1214, 1435
PspN4I GGNNCC 2 cut(s) 950, 2004
PstI CTGCAG 2 cut(s) 1402, 1612
PsuI RGATCY 1 cut(s) 1474
PsyI GACNNNGTC 1 cut(s) 1757
RsaI GTAC 4 cut(s) 239, 1109, 1891, 1960
RsaNI GTAC 4 cut(s) 238, 1108, 1890, 1959
RseI CAYNNNNRTG 1 cut(s) 502
SatI GCNGC 9 cut(s) 1789, 1825, 1861, 1897, 1900, 2083, 2113, 2116, 2119
Sau3AI GATC 4 cut(s) 1144, 1474, 1492, 2022
SchI GAGTC 2 cut(s) 377, 1738
ScrFI CCNGG 4 cut(s) 173, 574, 1216, 1437
SduI GDGCHC 1 cut(s) 546
SfaNI GCATC 5 cut(s) 731, 1330, 1607, 1773, 1941
SfcI CTRYAG 4 cut(s) 1323, 1398, 1479, 1608
SfoI GGCGCC 1 cut(s) 950
SmiMI CAYNNNNRTG 1 cut(s) 502
SmlI CTYRAG 3 cut(s) 437, 1066, 1520
SmoI CTYRAG 3 cut(s) 437, 1066, 1520
SseBI AGGCCT 1 cut(s) 1278
SsiI CCGC 1 cut(s) 1899
SspDI GGCGCC 1 cut(s) 948
SspI AATATT 2 cut(s) 1421, 1630
SspMI CTAG 9 cut(s) 110, 125, 638, 642, 1745, 1785, 1857, 1893, 1929
StuI AGGCCT 1 cut(s) 1278
StyD4I CCNGG 4 cut(s) 171, 572, 1214, 1435
StyI CCWWGG 3 cut(s) 124, 317, 960
TaaI ACNGT 5 cut(s) 70, 780, 890, 1540, 1565
TaiI ACGT 2 cut(s) 239, 1982
TaqI TCGA 3 cut(s) 652, 871, 1281
TatI WGTACW 1 cut(s) 1889
TauI GCSGC 1 cut(s) 1902
TfiI GAWTC 3 cut(s) 31, 649, 1265
TscAI CASTG 2 cut(s) 73, 1570
TseFI GTSAC 2 cut(s) 774, 1681
TseI GCWGC 8 cut(s) 1788, 1824, 1860, 1896, 2082, 2112, 2115, 2118
Tsp45I GTSAC 2 cut(s) 774, 1681
TspGWI ACGGA 3 cut(s) 1146, 1200, 1420
TspRI CASTG 2 cut(s) 73, 1570
Tth111I GACNNNGTC 1 cut(s) 1757
Vha464I CTTAAG 1 cut(s) 1520
XapI RAATTY 2 cut(s) 979, 1372
XceI RCATGY 1 cut(s) 1831
XmaJI CCTAGG 1 cut(s) 124
XmiI GTMKAC 3 cut(s) 703, 885, 1326
XmnI GAANNNNTTC 3 cut(s) 515, 813, 2001
XspI CTAG 9 cut(s) 110, 125, 638, 642, 1745, 1785, 1857, 1893, 1929
ZraI GACGTC 1 cut(s) 1980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.