Rmu_sc0005836.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005836.1
OG0000264
Physical Location & Seq
Reverse (-)
2 .. 986
985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005836.1_g000001.1.cds

Sequence Viewer

Length: 985 bp
atggaccgtccaccggacaccatgattgaagagaaagaagagctcatggtttcaccaactggtggagacccatttcacaaaatagcccattttctgaaaccgatagtgccttcctccgtttttaagttccctaatgaatctttctcctccctcccttcacattttgggccaagagaatgccctttagaggtagaattccctgggtggagaattcagcttcaagaagattggacttcttgggttgaccgattggcttcacttcaccaatccacatggaagaaagctggtatatatgaagcaatcttcaactcgacgtaccaaattagaagaaacaccgagttgatatatgggttggcagagaaatggtgttctgaaactaatagtttcatttttgcatggggtgaagcaacaatcacattagaggatttgatggtgatgggaggctattccgttcttggagagtggattttcaaccctcttgaaaacagagagctcaaggaaatagaagagaaacttaatgaagtgagaacagaaataaacaggggtgcgtcgcgcagaccttccgctagcttatggttgaagaagttcaaaaacaatggcagtgaattggagcatgaagcatttcttgtgatgtggttgtgcaggtatgtttttccggaatcttataatacaatacaaaagggtgtcttttccattgcaattcatttagctaggggcacccgagttgcacttgcacccgctattcttgctagcatttataaagatttgagtttattgaattcagcaattgtggattcaagcaagttagagacaggttgtgatggtgctatgaaagtcagcatcaagtcaccatttcaatttattcagctttgggtgtgggaaagatttgtagagctaagtcctatccccggagtgatcaatcttgggcagccaagattggctcgatgggacaaagtaaatggtgtggaagttgaaaacttgagga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

328

Amino Acids

37.57

Weight (kDa)

5.68

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 666, 759
Acc36I ACCTGC 1 cut(s) 633
AccB1I GGYRCC 1 cut(s) 716
AccB7I CCANNNNNTGG 1 cut(s) 62
AccII CGCG 1 cut(s) 553
AccIII TCCGGA 1 cut(s) 655
AciI CCGC 2 cut(s) 564, 738
AcsI RAATTY 3 cut(s) 194, 210, 778
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 4 cut(s) 13, 62, 187, 908
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 8 cut(s) 43, 217, 284, 493, 570, 710, 868, 895
AluI AGCT 8 cut(s) 43, 217, 284, 493, 570, 710, 868, 895
Alw21I GWGCWC 2 cut(s) 45, 495
Alw26I GTCTC 2 cut(s) 60, 803
Ama87I CYCGRG 1 cut(s) 720
Aor13HI TCCGGA 1 cut(s) 655
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 928
ApoI RAATTY 3 cut(s) 194, 210, 778
Asp700I GAANNNNTTC 2 cut(s) 584, 621
AspLEI GCGC 1 cut(s) 555
AspS9I GGNCC 2 cut(s) 4, 167
AsuC2I CCSGG 1 cut(s) 909
AsuHPI GGTGA 5 cut(s) 45, 254, 413, 445, 840
AsuNHI GCTAGC 2 cut(s) 566, 749
AvaI CYCGRG 1 cut(s) 720
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 719
BanI GGYRCC 1 cut(s) 716
BanII GRGCYC 2 cut(s) 45, 495
Bbv12I GWGCWC 2 cut(s) 45, 495
BbvI GCAGC 1 cut(s) 940
BccI CCATC 4 cut(s) 424, 430, 815, 939
BciT130I CCWGG 1 cut(s) 201
BclI TGATCA 1 cut(s) 915
BcnI CCSGG 1 cut(s) 909
BcoDI GTCTC 2 cut(s) 60, 803
BfaI CTAG 3 cut(s) 567, 711, 750
BfuAI ACCTGC 1 cut(s) 633
BisI GCNGC 1 cut(s) 929
BlsI GCNGC 1 cut(s) 930
Bme1390I CCNGG 2 cut(s) 201, 909
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 720
BmgT120I GGNCC 2 cut(s) 4, 167
BmiI GGNNCC 1 cut(s) 718
BmrFI CCNGG 2 cut(s) 201, 909
BmsI GCATC 1 cut(s) 849
BmtI GCTAGC 2 cut(s) 570, 753
BpuEI CTTGAG 1 cut(s) 479
BpuMI CCSGG 1 cut(s) 909
BsaI GGTCTC 1 cut(s) 60
BsaJI CCNNGG 3 cut(s) 199, 200, 907
BsaWI WCCGGW 2 cut(s) 13, 655
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 62, 187, 908
Bse1I ACTGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 693
BseAI TCCGGA 1 cut(s) 655
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 3 cut(s) 199, 200, 907
BseLI CCNNNNNNNGG 4 cut(s) 13, 62, 187, 908
BseMI GCAATG 1 cut(s) 693
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 1 cut(s) 136
BseSI GKGCMC 1 cut(s) 719
BseXI GCAGC 1 cut(s) 940
BsgI GTGCAG 1 cut(s) 661
Bsh1236I CGCG 1 cut(s) 553
BshFI GGCC 1 cut(s) 169
BshNI GGYRCC 1 cut(s) 716
BsiHKAI GWGCWC 2 cut(s) 45, 495
BsiHKCI CYCGRG 1 cut(s) 720
BsiSI CCGG 3 cut(s) 14, 656, 909
BslFI GGGAC 1 cut(s) 962
BslI CCNNNNNNNGG 4 cut(s) 13, 62, 187, 908
BsmAI GTCTC 2 cut(s) 60, 803
BsmFI GGGAC 1 cut(s) 962
BsmI GAATGC 1 cut(s) 182
BsnI GGCC 1 cut(s) 169
Bso31I GGTCTC 1 cut(s) 60
BsoBI CYCGRG 1 cut(s) 720
Bsp1286I GDGCHC 3 cut(s) 45, 495, 719
Bsp13I TCCGGA 1 cut(s) 655
Bsp143I GATC 1 cut(s) 915
BspACI CCGC 2 cut(s) 564, 738
BspANI GGCC 1 cut(s) 169
BspEI TCCGGA 1 cut(s) 655
BspFNI CGCG 1 cut(s) 553
BspLI GGNNCC 1 cut(s) 718
BspMI ACCTGC 1 cut(s) 633
BspOI GCTAGC 2 cut(s) 570, 753
BspQI GCTCTTC 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 716
BspTNI GGTCTC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 693
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 3 cut(s) 199, 200, 907
BssMI GATC 1 cut(s) 915
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 3 cut(s) 24, 33, 501
BstC8I GCNNGC 2 cut(s) 568, 751
BstDEI CTNAG 1 cut(s) 896
BstFNI CGCG 1 cut(s) 553
BstHHI GCGC 1 cut(s) 555
BstKTI GATC 1 cut(s) 918
BstMAI GTCTC 2 cut(s) 60, 803
BstMBI GATC 1 cut(s) 915
BstMWI GCNNNNNNNGC 1 cut(s) 746
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 2 cut(s) 199, 907
BstSLI GKGCMC 1 cut(s) 719
BstUI CGCG 1 cut(s) 553
BstV1I GCAGC 1 cut(s) 940
BsuRI GGCC 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 607
BtsIMutI CAGTG 1 cut(s) 607
BveI ACCTGC 1 cut(s) 633
Cac8I GCNNGC 2 cut(s) 568, 751
CfoI GCGC 1 cut(s) 555
Cfr13I GGNCC 2 cut(s) 4, 167
CseI GACGC 1 cut(s) 537
Csp6I GTAC 1 cut(s) 316
CviAII CATG 5 cut(s) 22, 46, 273, 396, 614
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 1 cut(s) 896
DpnI GATC 1 cut(s) 917
DpnII GATC 1 cut(s) 915
Eam1104I CTCTTC 3 cut(s) 24, 33, 501
EarI CTCTTC 3 cut(s) 24, 33, 501
Ecl136II GAGCTC 2 cut(s) 43, 493
Eco24I GRGCYC 2 cut(s) 45, 495
Eco31I GGTCTC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 2 cut(s) 43, 493
Eco88I CYCGRG 1 cut(s) 720
EcoICRI GAGCTC 2 cut(s) 43, 493
EcoRI GAATTC 3 cut(s) 194, 210, 778
EcoRII CCWGG 1 cut(s) 199
EcoT38I GRGCYC 2 cut(s) 45, 495
FaeI CATG 5 cut(s) 25, 49, 276, 399, 617
FalI AAGNNNNNCTT 6 cut(s) 498, 530, 609, 641, 671, 703
FaqI GGGAC 1 cut(s) 962
FatI CATG 5 cut(s) 21, 45, 272, 395, 613
FauI CCCGC 1 cut(s) 745
FbaI TGATCA 1 cut(s) 915
Fnu4HI GCNGC 1 cut(s) 929
FriOI GRGCYC 2 cut(s) 45, 495
Fsp4HI GCNGC 1 cut(s) 929
FspBI CTAG 3 cut(s) 567, 711, 750
GlaI GCGC 1 cut(s) 554
GluI GCNGC 1 cut(s) 929
HaeIII GGCC 1 cut(s) 169
HapII CCGG 3 cut(s) 14, 656, 909
HgaI GACGC 1 cut(s) 537
HhaI GCGC 1 cut(s) 555
Hin1II CATG 5 cut(s) 25, 49, 276, 399, 617
Hin6I GCGC 1 cut(s) 553
HinP1I GCGC 1 cut(s) 553
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 3 cut(s) 137, 659, 794
HpaII CCGG 3 cut(s) 14, 656, 909
HphI GGTGA 5 cut(s) 45, 254, 413, 445, 840
Hpy166II GTNNAC 2 cut(s) 11, 244
Hpy188I TCNGA 2 cut(s) 96, 373
Hpy188III TCNNGA 3 cut(s) 221, 479, 656
Hpy8I GTNNAC 2 cut(s) 11, 244
Hpy99I CGWCG 2 cut(s) 316, 553
HpyAV CCTTC 3 cut(s) 120, 165, 570
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 5 cut(s) 395, 642, 698, 728, 734
HpyF10VI GCNNNNNNNGC 1 cut(s) 746
HpyF3I CTNAG 1 cut(s) 896
HpySE526I ACGT 1 cut(s) 314
Hsp92II CATG 5 cut(s) 25, 49, 276, 399, 617
HspAI GCGC 1 cut(s) 553
Kpn2I TCCGGA 1 cut(s) 655
Ksp22I TGATCA 1 cut(s) 915
Kzo9I GATC 1 cut(s) 915
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 610
Lsp1109I GCAGC 1 cut(s) 940
LweI GCATC 1 cut(s) 849
MaeI CTAG 3 cut(s) 567, 711, 750
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 1 cut(s) 846
MalI GATC 1 cut(s) 917
MboI GATC 1 cut(s) 915
MboII GAAGA 8 cut(s) 41, 50, 236, 289, 295, 339, 518, 592
MfeI CAATTG 1 cut(s) 786
MhlI GDGCHC 3 cut(s) 45, 495, 719
MluCI AATT 8 cut(s) 194, 210, 321, 605, 699, 778, 786, 857
MnlI CCTC 8 cut(s) 124, 157, 161, 181, 415, 434, 486, 975
MroI TCCGGA 1 cut(s) 655
MroXI GAANNNNTTC 2 cut(s) 584, 621
MseI TTAA 2 cut(s) 123, 516
MspI CCGG 3 cut(s) 14, 656, 909
MspR9I CCNGG 2 cut(s) 201, 909
MunI CAATTG 1 cut(s) 786
Mva1269I GAATGC 1 cut(s) 182
MvaI CCWGG 1 cut(s) 201
MvnI CGCG 1 cut(s) 553
MwoI GCNNNNNNNGC 1 cut(s) 746
NciI CCSGG 1 cut(s) 909
NdeII GATC 1 cut(s) 915
NheI GCTAGC 2 cut(s) 566, 749
NlaIII CATG 5 cut(s) 25, 49, 276, 399, 617
NlaIV GGNNCC 1 cut(s) 718
NmuCI GTSAC 1 cut(s) 846
PasI CCCWGGG 1 cut(s) 200
PciSI GCTCTTC 1 cut(s) 33
PctI GAATGC 1 cut(s) 182
PdmI GAANNNNTTC 2 cut(s) 584, 621
PfeI GAWTC 3 cut(s) 137, 659, 794
PflMI CCANNNNNTGG 1 cut(s) 62
PkrI GCNGC 1 cut(s) 930
PsiI TTATAA 2 cut(s) 666, 759
Psp124BI GAGCTC 2 cut(s) 45, 495
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 718
PspPI GGNCC 2 cut(s) 4, 167
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SacI GAGCTC 2 cut(s) 45, 495
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 2 cut(s) 123, 516
SatI GCNGC 1 cut(s) 929
Sau3AI GATC 1 cut(s) 915
Sau96I GGNCC 2 cut(s) 4, 167
ScrFI CCNGG 2 cut(s) 201, 909
SduI GDGCHC 3 cut(s) 45, 495, 719
SfaNI GCATC 1 cut(s) 849
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 2 cut(s) 494, 979
SmoI CTYRAG 2 cut(s) 494, 979
Sse9I AATT 8 cut(s) 194, 210, 321, 605, 699, 778, 786, 857
SsiI CCGC 2 cut(s) 564, 738
SspMI CTAG 3 cut(s) 567, 711, 750
SstI GAGCTC 2 cut(s) 45, 495
StyD4I CCNGG 2 cut(s) 199, 907
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 1 cut(s) 317
TaqI TCGA 2 cut(s) 311, 943
TaqII GACCGA 1 cut(s) 261
TasI AATT 8 cut(s) 194, 210, 321, 605, 699, 778, 786, 857
TfiI GAWTC 3 cut(s) 137, 659, 794
Tru1I TTAA 2 cut(s) 123, 516
Tru9I TTAA 2 cut(s) 123, 516
TscAI CASTG 1 cut(s) 607
TseFI GTSAC 1 cut(s) 846
TseI GCWGC 1 cut(s) 928
Tsp45I GTSAC 1 cut(s) 846
TspDTI ATGAA 7 cut(s) 150, 309, 376, 534, 630, 692, 845
TspGWI ACGGA 2 cut(s) 106, 439
TspRI CASTG 1 cut(s) 607
Van91I CCANNNNNTGG 1 cut(s) 62
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 3 cut(s) 194, 210, 778
XmnI GAANNNNTTC 2 cut(s) 584, 621
XspI CTAG 3 cut(s) 567, 711, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.