Rorug05G0172300

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000264
Physical Location & Seq
Forward (+)
16070623 .. 16072523
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0172300.1

Sequence Viewer

Length: 630 bp
ATGGTGGAACTTGAACAAGAATTGGAAGAACTTGAACTGTTGGAGGTTGAAGGAGAAATGGAAGTACTTGAAATGTTGGCTGTTGAAGGTTGTTCTACCACAAATGATTACTTTGATGCCAAGGAACCAAACAAGGGTGTGAACCTTGAGGCATTTGCTTATGATAAGACTGATATCCTTCTCTGGGATGTTACACCTCTCACCCTTGGTATTGAAAATGCAGGTGGTATTATGACTAAATTGATTCCCAGATACACTTTGAGACCAGGTTTTCACCACTTATCAGGATCAGCAGAGATCCTTGGAAAATTTGAACTTACTGGCATTCCCCCAGCCCCAAGGGGTATTCCTCGGATTGAAGTCACGTTTGAAGTGGATACCAATGGTATCCTGAATGTCAAGGCAGAAGACAAGGGCACTGGCAAATCTGAGAAGATCACCATCACCAATGACAAGGGTTGCGCAAGCCAAGAGGAAATTGAGTGCATTGTCAAAGAGGCAGAGGAGTTAGCTGATGAGGACCAGAAGGTGAAGGAGAGGATTGATGCCCATAACAGCCTGAAAAGTTTTATCTACAACATGAAGAACCAGATCAATGAAATGGACAAGGTTGTTGACAAGCGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

209

Amino Acids

23.4

Weight (kDa)

4.52

Isoelectric Point (pI)

27.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 97 - 207 1.7e-32 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48145 AT1G50745
fragaria_vesca FvH4_3g22280 FvH4_3g22281 FvH4_3g22290 FvH4_3g22300 FvH4_3g22321 FvH4_3g22330 FvH4_3g22330 FvH4_3g22331
rosa_chinensis RchiOBHm_Chr5g0038351 RchiOBHm_Chr5g0038361 RchiOBHm_Chr5g0038371 RchiOBHm_Chr5g0038381 RchiOBHm_Chr5g0038421 RchiOBHm_Chr5g0038451 RchiOBHm_Chr5g0038471 RchiOBHm_Chr5g0038491 RchiOBHm_Chr5g0038561 RchiOBHm_Chr5g0038731 RchiOBHm_Chr5g0038741 RchiOBHm_Chr5g0038771 RchiOBHm_Chr5g0038781 RchiOBHm_Chr5g0038791 RchiOBHm_Chr5g0038801 RchiOBHm_Chr5g0038831
rosa_laevigata RLG00000008815 RLG00000020213 RLG00000033850 RLG00000033864 RLG00000033875
rosa_multiflora Rmu_co8006804.1_g000001 Rmu_co8168012.1_g000001 Rmu_co8236409.1_g000001 Rmu_co8247247.1_g000001 Rmu_co8440391.1_g000001 Rmu_sc0000533.1_g000088 Rmu_sc0003198.1_g000005 Rmu_sc0003198.1_g000006 Rmu_sc0003198.1_g000007 Rmu_sc0003198.1_g000008 Rmu_sc0003198.1_g000013 Rmu_sc0005722.1_g000005 Rmu_sc0005722.1_g000007 Rmu_sc0005722.1_g000012 Rmu_sc0005722.1_g000013 Rmu_sc0005836.1_g000001 Rmu_sc0009149.1_g000006 Rmu_sc0009149.1_g000018 Rmu_sc0009149.1_g000020 Rmu_sc0017397.1_g000004 Rmu_sc0025071.1_g000001 Rmu_sc0032545.1_g000001 Rmu_sc0038346.1_g000001
rosa_roxburghii Rroxscaffold_1G00042150 Rroxscaffold_1G00042180 Rroxscaffold_1G00042230 Rroxscaffold_1G00042240 Rroxscaffold_1G00042260 Rroxscaffold_1G00042320 Rroxscaffold_1G00042330 Rroxscaffold_1G00042350 Rroxscaffold_1G00042360 Rroxscaffold_1G00042370 Rroxscaffold_1G00042400 Rroxscaffold_1G00042430 Rroxscaffold_1G00042440 Rroxscaffold_1G00042510 Rroxscaffold_1G00042580 Rroxscaffold_1G00042620
rosa_rugosa Rorug05G0172200 Rorug05G0172300 Rorug05G0172500 Rorug05G0173100 Rorug05G0173200.1 Rorug05G0173600 Rorug05G0173800 Rorug05G0174000 Rorug05G0174100 Rorug05G0174200 Rorug05G0174200 Rorug05G0174400 Rorug05G0174500 Rorug05G0174600 Rorug05G0174700 Rorug05G0174800
rosa_samantha Rh5AG259600 Rh5AG260200 Rh5AG260600 Rh5AG260800 Rh5AG261300 Rh5AG261400 Rh5AG261500 Rh5AG261700 Rh5AG261900 Rh5BG263600 Rh5BG264200 Rh5BG264500 Rh5BG264800 Rh5BG265100 Rh5BG265200 Rh5BG265500 Rh5BG265600 Rh5BG266000 Rh5CG295900 Rh5CG296700 Rh5CG296800 Rh5CG296900 Rh5CG297200 Rh5CG297700 Rh5CG297900 Rh5CG298100 Rh5CG298200 Rh5CG298300 Rh5CG298400 Rh5CG298500 Rh5CG298900 Rh5CG299200 Rh6DG125700
rosa_wichuraiana Rw0G001950 Rw0G001960 Rw0G013290 Rw5G024020 Rw5G024310 Rw5G024340 Rw5G024350 Rw5G024370 Rw5G024380 Rw5G024390 Rw5G024400 Rw5G024420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 212
Acc16I TGCGCA 1 cut(s) 463
Acc36I ACCTGC 1 cut(s) 212
AclWI GGATC 2 cut(s) 292, 295
AcsI RAATTY 1 cut(s) 308
AfaI GTAC 1 cut(s) 66
AfiI CCNNNNNNNGG 2 cut(s) 134, 184
AgsI TTSAA 9 cut(s) 14, 35, 50, 71, 86, 215, 314, 359, 371
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 1 cut(s) 512
AluI AGCT 1 cut(s) 512
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 2 cut(s) 292, 295
ApoI RAATTY 1 cut(s) 308
AspLEI GCGC 1 cut(s) 464
AspS9I GGNCC 1 cut(s) 520
AsuHPI GGTGA 5 cut(s) 193, 266, 430, 436, 541
AvaII GGWCC 1 cut(s) 520
BaeGI GKGCMC 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 414
BccI CCATC 1 cut(s) 449
BciT130I CCWGG 1 cut(s) 267
BciVI GTATCC 2 cut(s) 370, 398
BcoDI GTCTC 1 cut(s) 256
BfuAI ACCTGC 1 cut(s) 212
BfuI GTATCC 2 cut(s) 370, 398
BmcAI AGTACT 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 1 cut(s) 520
BmgT120I GGNCC 1 cut(s) 520
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 106, 535
BpiI GAAGAC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 167
BsaBI GATNNNNATC 1 cut(s) 440
BsaI GGTCTC 1 cut(s) 256
BsaJI CCNNGG 5 cut(s) 120, 205, 301, 338, 350
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 184
Bse1I ACTGG 2 cut(s) 325, 424
Bse8I GATNNNNATC 1 cut(s) 440
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 5 cut(s) 120, 205, 301, 338, 350
BseGI GGATG 1 cut(s) 193
BseJI GATNNNNATC 1 cut(s) 440
BseLI CCNNNNNNNGG 2 cut(s) 134, 184
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 2 cut(s) 325, 424
BseRI GAGGAG 1 cut(s) 518
BseSI GKGCMC 1 cut(s) 419
BseYI CCCAGC 1 cut(s) 331
BslI CCNNNNNNNGG 2 cut(s) 134, 184
BsmAI GTCTC 1 cut(s) 256
BsmI GAATGC 1 cut(s) 324
Bso31I GGTCTC 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 419
Bsp143I GATC 4 cut(s) 287, 297, 435, 591
BspCNI CTCAG 1 cut(s) 421
BspLI GGNNCC 1 cut(s) 126
BspMI ACCTGC 1 cut(s) 212
BspPI GGATC 2 cut(s) 292, 295
BspTNI GGTCTC 1 cut(s) 256
BsrI ACTGG 2 cut(s) 325, 424
BssECI CCNNGG 5 cut(s) 120, 205, 301, 338, 350
BssMI GATC 4 cut(s) 287, 297, 435, 591
BssT1I CCWWGG 4 cut(s) 120, 205, 301, 338
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 1 cut(s) 429
BstF5I GGATG 1 cut(s) 193
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 4 cut(s) 290, 300, 438, 594
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 4 cut(s) 287, 297, 435, 591
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstSLI GKGCMC 1 cut(s) 419
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BsuI GTATCC 2 cut(s) 370, 398
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 417
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 1 cut(s) 466
CfoI GCGC 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 520
CsiI ACCWGGT 1 cut(s) 265
Csp6I GTAC 1 cut(s) 65
CviAII CATG 1 cut(s) 580
CviJI RGCY 5 cut(s) 80, 335, 468, 512, 558
CviKI_1 RGCY 5 cut(s) 80, 335, 468, 512, 558
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 1 cut(s) 429
DpnI GATC 4 cut(s) 289, 299, 437, 593
DpnII GATC 4 cut(s) 287, 297, 435, 591
Eco130I CCWWGG 4 cut(s) 120, 205, 301, 338
Eco31I GGTCTC 1 cut(s) 256
Eco32I GATATC 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 520
EcoRII CCWGG 1 cut(s) 265
EcoRV GATATC 1 cut(s) 175
EcoT14I CCWWGG 4 cut(s) 120, 205, 301, 338
ErhI CCWWGG 4 cut(s) 120, 205, 301, 338
FaeI CATG 1 cut(s) 583
FaiI YATR 4 cut(s) 162, 233, 552, 581
FatI CATG 1 cut(s) 579
FokI GGATG 1 cut(s) 200
FspI TGCGCA 1 cut(s) 463
GlaI GCGC 1 cut(s) 463
GsaI CCCAGC 1 cut(s) 335
HhaI GCGC 1 cut(s) 464
Hin1II CATG 1 cut(s) 583
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HinfI GANTC 1 cut(s) 244
HphI GGTGA 5 cut(s) 193, 266, 430, 436, 541
Hpy166II GTNNAC 2 cut(s) 142, 616
Hpy188I TCNGA 2 cut(s) 354, 430
Hpy188III TCNNGA 2 cut(s) 285, 391
Hpy8I GTNNAC 2 cut(s) 142, 616
HpyAV CCTTC 5 cut(s) 44, 80, 188, 520, 526
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4IV ACGT 1 cut(s) 365
HpyCH4V TGCA 2 cut(s) 221, 486
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 1 cut(s) 365
Hsp92II CATG 1 cut(s) 583
HspAI GCGC 1 cut(s) 462
Kzo9I GATC 4 cut(s) 287, 297, 435, 591
LweI GCATC 2 cut(s) 106, 535
MabI ACCWGGT 1 cut(s) 265
MaeII ACGT 1 cut(s) 365
MaeIII GTNAC 2 cut(s) 190, 361
MalI GATC 4 cut(s) 289, 299, 437, 593
MboI GATC 4 cut(s) 287, 297, 435, 591
MboII GAAGA 4 cut(s) 38, 419, 445, 595
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 419
MluCI AATT 4 cut(s) 20, 239, 308, 477
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 9 cut(s) 37, 142, 207, 360, 466, 490, 496, 511, 531
MspR9I CCNGG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 324
MvaI CCWGG 1 cut(s) 267
NdeII GATC 4 cut(s) 287, 297, 435, 591
NlaIII CATG 1 cut(s) 583
NlaIV GGNNCC 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 361
NsbI TGCGCA 1 cut(s) 463
PaqCI CACCTGC 1 cut(s) 212
PctI GAATGC 1 cut(s) 324
PfeI GAWTC 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 265
PspFI CCCAGC 1 cut(s) 331
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 520
PsuI RGATCY 1 cut(s) 297
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
Sau3AI GATC 4 cut(s) 287, 297, 435, 591
Sau96I GGNCC 1 cut(s) 520
ScaI AGTACT 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 267
SduI GDGCHC 1 cut(s) 419
SexAI ACCWGGT 1 cut(s) 265
SfaNI GCATC 2 cut(s) 106, 535
SinI GGWCC 1 cut(s) 520
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 4 cut(s) 20, 239, 308, 477
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 4 cut(s) 120, 205, 301, 338
TaaI ACNGT 1 cut(s) 39
TaiI ACGT 1 cut(s) 368
TasI AATT 4 cut(s) 20, 239, 308, 477
TatI WGTACW 1 cut(s) 64
TfiI GAWTC 1 cut(s) 244
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 361
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 2 cut(s) 596, 612
TspRI CASTG 1 cut(s) 424
VpaK11BI GGWCC 1 cut(s) 520
XapI RAATTY 1 cut(s) 308
ZrmI AGTACT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.